Wall clock time and date at job start Mon Mar 30 2020 06:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47032 * 2 1 4 4 H 1.09006 * 109.47070 * 55.02585 * 3 2 1 5 5 C 1.50702 * 109.47052 * 175.02249 * 3 2 1 6 6 H 1.08002 * 119.99620 * 120.00035 * 5 3 2 7 7 C 1.37875 * 120.00027 * 299.99975 * 5 3 2 8 8 N 1.31516 * 120.00122 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99862 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46902 * 90.00676 * 9 7 5 11 11 H 1.48504 * 109.46902 * 210.00289 * 9 7 5 12 12 H 1.48494 * 109.47266 * 330.00353 * 9 7 5 13 13 N 1.46899 * 109.47528 * 295.02601 * 3 2 1 14 14 C 1.46895 * 111.00309 * 156.12217 * 13 3 2 15 15 H 1.08993 * 109.47134 * 34.82955 * 14 13 3 16 16 C 1.53004 * 109.47001 * 274.83362 * 14 13 3 17 17 C 1.50701 * 109.47473 * 154.83749 * 14 13 3 18 18 S 1.76204 * 126.03735 * 45.01948 * 17 14 13 19 19 C 1.70980 * 90.28023 * 180.02562 * 18 17 14 20 20 C 1.50696 * 124.91194 * 179.97438 * 19 18 17 21 21 N 1.29025 * 110.16677 * 0.02562 * 19 18 17 22 22 C 1.31782 * 117.12656 * 359.71671 * 21 19 18 23 23 C 1.50701 * 122.74832 * 180.33442 * 22 21 19 24 24 H 1.09000 * 109.47286 * 295.42614 * 1 2 3 25 25 H 1.08999 * 109.47025 * 55.42559 * 1 2 3 26 26 H 1.09000 * 109.47162 * 175.42582 * 1 2 3 27 27 H 1.08989 * 109.47098 * 120.00341 * 2 1 3 28 28 H 1.09000 * 109.47060 * 240.00324 * 2 1 3 29 29 H 0.96994 * 120.00070 * 180.02562 * 8 7 5 30 30 H 1.00902 * 110.99812 * 280.07952 * 13 3 2 31 31 H 1.09001 * 109.46892 * 65.03410 * 16 14 13 32 32 H 1.08994 * 109.47311 * 185.03361 * 16 14 13 33 33 H 1.08998 * 109.47090 * 305.03877 * 16 14 13 34 34 H 1.08999 * 109.47118 * 89.99752 * 20 19 18 35 35 H 1.09001 * 109.46765 * 209.99512 * 20 19 18 36 36 H 1.08996 * 109.47339 * 329.99725 * 20 19 18 37 37 H 1.08998 * 109.46856 * 270.19565 * 23 22 21 38 38 H 1.08998 * 109.47609 * 30.20667 * 23 22 21 39 39 H 1.09005 * 109.46896 * 150.19997 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9815 0.8421 5 6 3.5420 1.4443 0.1233 6 1 4.1469 1.8890 -0.6531 7 6 4.1437 0.8783 1.2271 8 7 3.4070 0.3363 2.1722 9 14 6.0055 0.8799 1.3795 10 1 6.4435 2.1127 2.0822 11 1 6.4398 -0.3113 2.1526 12 1 6.6131 0.8396 0.0252 13 7 1.6509 2.0996 -1.2549 14 6 1.5980 3.5584 -1.0910 15 1 2.3773 3.8746 -0.3978 16 6 0.2293 3.9601 -0.5375 17 6 1.8141 4.2222 -2.4266 18 16 1.0588 3.7577 -3.9493 19 6 1.8922 5.0142 -4.7556 20 6 1.7803 5.3175 -6.2275 21 7 2.6314 5.6644 -3.9216 22 6 2.6091 5.2697 -2.6645 23 6 3.4166 5.9422 -1.5844 24 1 -0.3634 0.4412 0.9281 25 1 -0.3633 0.5832 -0.8462 26 1 -0.3633 -1.0244 -0.0820 27 1 1.8933 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.8304 -0.0615 2.9489 30 1 2.2737 1.8424 -2.0060 31 1 0.1099 3.5531 0.4666 32 1 0.1574 5.0470 -0.4999 33 1 -0.5542 3.5662 -1.1847 34 1 0.9727 6.0311 -6.3911 35 1 2.7187 5.7431 -6.5830 36 1 1.5686 4.3979 -6.7729 37 1 4.3950 5.4672 -1.5133 38 1 3.5416 6.9973 -1.8278 39 1 2.8970 5.8485 -0.6307 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040518604.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:53 Heat of formation + Delta-G solvation = 21.904622 kcal Electronic energy + Delta-G solvation = -18805.491092 eV Core-core repulsion = 16067.064228 eV Total energy + Delta-G solvation = -2738.426864 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.72039 -36.81600 -33.97358 -32.23806 -31.32784 -29.24329 -28.84099 -26.81422 -25.92616 -22.99694 -22.56645 -21.14979 -19.54849 -18.39921 -17.43962 -16.64255 -15.13507 -15.04937 -14.71290 -14.45729 -13.58215 -13.47824 -13.20348 -13.07317 -12.79783 -12.57279 -12.24088 -12.14025 -11.99598 -11.74129 -11.51850 -11.34815 -11.13331 -11.05680 -10.85892 -10.69510 -10.59879 -10.15094 -9.63652 -9.61176 -9.32152 -9.11767 -8.88181 -8.40344 -8.25554 -7.37815 -6.03371 -4.16280 0.98508 1.62976 2.09555 3.02065 3.24383 3.32168 3.35425 4.26118 4.36838 5.04750 5.13412 5.23443 5.26853 5.36552 5.39814 5.57546 5.77556 5.84016 5.91941 5.98797 6.04286 6.14206 6.31073 6.37974 6.49888 6.51176 6.54923 6.69312 6.73271 7.08221 7.15788 7.39622 7.55136 7.74390 7.99061 8.03742 8.09543 8.26603 8.57362 8.95189 9.51751 10.96829 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.019458 B = 0.006185 C = 0.005323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.625655 B = 4526.224811 C = 5258.857776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.036 0.964 5 C -0.546 4.546 6 H 0.052 0.948 7 C 0.070 3.930 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.681 5.681 14 C 0.160 3.840 15 H 0.072 0.928 16 C -0.132 4.132 17 C -0.199 4.199 18 S 0.143 5.857 19 C 0.016 3.984 20 C -0.071 4.071 21 N -0.472 5.472 22 C 0.052 3.948 23 C -0.076 4.076 24 H 0.035 0.965 25 H 0.050 0.950 26 H 0.024 0.976 27 H 0.091 0.909 28 H 0.030 0.970 29 H 0.261 0.739 30 H 0.329 0.671 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.110 7.735 -10.464 13.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.054 0.946 5 C -0.585 4.585 6 H 0.071 0.929 7 C -0.133 4.133 8 N -0.522 5.522 9 Si 0.714 3.286 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.311 5.311 14 C 0.048 3.952 15 H 0.090 0.910 16 C -0.190 4.190 17 C -0.320 4.320 18 S 0.398 5.602 19 C -0.262 4.262 20 C -0.132 4.132 21 N -0.188 5.188 22 C -0.080 4.080 23 C -0.135 4.135 24 H 0.055 0.945 25 H 0.069 0.931 26 H 0.043 0.957 27 H 0.109 0.891 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.146 0.854 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.185 7.211 -10.715 14.320 hybrid contribution 2.612 0.532 0.849 2.798 sum -3.573 7.743 -9.866 13.041 Atomic orbital electron populations 1.21718 0.98968 0.98511 1.00378 1.21485 0.92132 0.99083 1.01711 1.19195 0.92825 0.91290 0.85929 0.94618 1.21846 0.92685 1.38401 1.05599 0.92948 1.24902 0.97834 0.94893 0.95677 1.69869 1.34822 1.38100 1.09388 0.86686 0.86158 0.77596 0.78116 1.20693 1.21129 1.20046 1.61155 1.56358 1.03503 1.10084 1.19878 0.97725 0.89640 0.87990 0.91041 1.21803 0.96319 0.99329 1.01547 1.26111 1.03533 1.02173 1.00206 1.83963 1.44174 1.31768 1.00275 1.26874 0.99930 0.98176 1.01201 1.20335 1.03832 1.02566 0.86422 1.66093 1.21033 1.29743 1.01889 1.20121 0.99954 0.96249 0.91680 1.20334 0.98898 0.99765 0.94536 0.94536 0.93123 0.95667 0.89087 0.95157 0.92848 0.85400 0.91830 0.93514 0.92512 0.90146 0.89819 0.90411 0.90750 0.91229 0.90534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.85 37.16 0.37 -2.41 16 2 C -0.11 -2.47 5.45 -26.73 -0.15 -2.61 16 3 C 0.22 5.11 1.79 -68.86 -0.12 4.99 16 4 H 0.04 0.93 7.17 -51.93 -0.37 0.56 16 5 C -0.55 -14.32 8.21 -34.44 -0.28 -14.61 16 6 H 0.05 1.39 7.76 -52.49 -0.41 0.99 16 7 C 0.07 1.87 5.29 -17.82 -0.09 1.77 16 8 N -0.88 -24.40 11.29 55.43 0.63 -23.77 16 9 Si 0.89 20.92 29.54 -169.99 -5.02 15.89 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.68 -13.79 5.32 -102.17 -0.54 -14.33 16 14 C 0.16 2.94 2.58 -68.86 -0.18 2.76 16 15 H 0.07 1.45 6.23 -51.93 -0.32 1.13 16 16 C -0.13 -2.18 9.36 37.16 0.35 -1.83 16 17 C -0.20 -3.36 5.12 -35.92 -0.18 -3.55 16 18 S 0.14 2.08 23.05 -107.50 -2.48 -0.40 16 19 C 0.02 0.22 7.39 -13.46 -0.10 0.12 16 20 C -0.07 -0.70 10.46 36.00 0.38 -0.32 16 21 N -0.47 -7.77 10.53 -8.06 -0.08 -7.85 16 22 C 0.05 0.87 6.74 -84.23 -0.57 0.30 16 23 C -0.08 -1.13 9.81 36.01 0.35 -0.78 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.98 7.63 -51.93 -0.40 0.58 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.09 2.38 5.95 -51.94 -0.31 2.07 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.33 6.89 8.05 -39.29 -0.32 6.57 16 31 H 0.06 1.11 7.50 -51.93 -0.39 0.72 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.08 1.09 7.04 -51.93 -0.37 0.73 16 LS Contribution 330.18 15.07 4.98 4.98 Total: -1.00 -27.96 330.18 -9.00 -36.96 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -6.24 Total: 4.69 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: -0.23 Total: -16.16 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.00 Total: -45.96 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -2.48 Total: -0.40 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.96 -9.00 -36.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040518604.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.864 kcal (2) G-P(sol) polarization free energy of solvation -27.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds