Wall clock time and date at job start Mon Mar 30 2020 06:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47032 * 2 1 4 4 H 1.09006 * 109.47070 * 55.02585 * 3 2 1 5 5 C 1.50702 * 109.47052 * 175.02249 * 3 2 1 6 6 H 1.08002 * 119.99620 * 120.00035 * 5 3 2 7 7 C 1.37875 * 120.00027 * 299.99975 * 5 3 2 8 8 N 1.31516 * 120.00122 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99862 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46902 * 90.00676 * 9 7 5 11 11 H 1.48504 * 109.46902 * 210.00289 * 9 7 5 12 12 H 1.48494 * 109.47266 * 330.00353 * 9 7 5 13 13 N 1.46899 * 109.47528 * 295.02601 * 3 2 1 14 14 C 1.46895 * 111.00309 * 156.12217 * 13 3 2 15 15 H 1.08993 * 109.47134 * 34.82955 * 14 13 3 16 16 C 1.53004 * 109.47001 * 274.83362 * 14 13 3 17 17 C 1.50701 * 109.47473 * 154.83749 * 14 13 3 18 18 S 1.76204 * 126.03735 * 45.01948 * 17 14 13 19 19 C 1.70980 * 90.28023 * 180.02562 * 18 17 14 20 20 C 1.50696 * 124.91194 * 179.97438 * 19 18 17 21 21 N 1.29025 * 110.16677 * 0.02562 * 19 18 17 22 22 C 1.31782 * 117.12656 * 359.71671 * 21 19 18 23 23 C 1.50701 * 122.74832 * 180.33442 * 22 21 19 24 24 H 1.09000 * 109.47286 * 295.42614 * 1 2 3 25 25 H 1.08999 * 109.47025 * 55.42559 * 1 2 3 26 26 H 1.09000 * 109.47162 * 175.42582 * 1 2 3 27 27 H 1.08989 * 109.47098 * 120.00341 * 2 1 3 28 28 H 1.09000 * 109.47060 * 240.00324 * 2 1 3 29 29 H 0.96994 * 120.00070 * 180.02562 * 8 7 5 30 30 H 1.00902 * 110.99812 * 280.07952 * 13 3 2 31 31 H 1.09001 * 109.46892 * 65.03410 * 16 14 13 32 32 H 1.08994 * 109.47311 * 185.03361 * 16 14 13 33 33 H 1.08998 * 109.47090 * 305.03877 * 16 14 13 34 34 H 1.08999 * 109.47118 * 89.99752 * 20 19 18 35 35 H 1.09001 * 109.46765 * 209.99512 * 20 19 18 36 36 H 1.08996 * 109.47339 * 329.99725 * 20 19 18 37 37 H 1.08998 * 109.46856 * 270.19565 * 23 22 21 38 38 H 1.08998 * 109.47609 * 30.20667 * 23 22 21 39 39 H 1.09005 * 109.46896 * 150.19997 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9815 0.8421 5 6 3.5420 1.4443 0.1233 6 1 4.1469 1.8890 -0.6531 7 6 4.1437 0.8783 1.2271 8 7 3.4070 0.3363 2.1722 9 14 6.0055 0.8799 1.3795 10 1 6.4435 2.1127 2.0822 11 1 6.4398 -0.3113 2.1526 12 1 6.6131 0.8396 0.0252 13 7 1.6509 2.0996 -1.2549 14 6 1.5980 3.5584 -1.0910 15 1 2.3773 3.8746 -0.3978 16 6 0.2293 3.9601 -0.5375 17 6 1.8141 4.2222 -2.4266 18 16 1.0588 3.7577 -3.9493 19 6 1.8922 5.0142 -4.7556 20 6 1.7803 5.3175 -6.2275 21 7 2.6314 5.6644 -3.9216 22 6 2.6091 5.2697 -2.6645 23 6 3.4166 5.9422 -1.5844 24 1 -0.3634 0.4412 0.9281 25 1 -0.3633 0.5832 -0.8462 26 1 -0.3633 -1.0244 -0.0820 27 1 1.8933 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.8304 -0.0615 2.9489 30 1 2.2737 1.8424 -2.0060 31 1 0.1099 3.5531 0.4666 32 1 0.1574 5.0470 -0.4999 33 1 -0.5542 3.5662 -1.1847 34 1 0.9727 6.0311 -6.3911 35 1 2.7187 5.7431 -6.5830 36 1 1.5686 4.3979 -6.7729 37 1 4.3950 5.4672 -1.5133 38 1 3.5416 6.9973 -1.8278 39 1 2.8970 5.8485 -0.6307 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040518604.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:52 Heat of formation + Delta-G solvation = 5.653386 kcal Electronic energy + Delta-G solvation = -18806.195798 eV Core-core repulsion = 16067.064228 eV Total energy + Delta-G solvation = -2739.131570 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.93894 -38.47340 -35.59284 -33.80526 -32.93463 -30.65293 -30.05543 -28.12490 -27.77375 -24.78102 -23.70148 -22.59679 -21.35519 -19.71809 -18.69360 -18.60384 -16.81209 -16.43847 -16.09664 -16.00634 -15.27619 -14.76983 -14.58656 -14.23578 -14.18544 -13.80703 -13.72810 -13.41078 -13.24125 -13.12629 -13.11263 -12.94383 -12.80218 -12.58607 -12.53590 -12.25918 -12.08977 -11.93696 -11.49149 -11.43603 -11.01139 -10.52539 -10.44539 -10.11396 -9.45610 -9.13894 -8.06614 -6.27486 -0.20380 0.46522 0.89778 1.35510 1.38473 1.46477 1.80077 2.38830 3.13860 3.20397 3.57203 3.86082 4.10921 4.31575 4.47286 4.54868 4.59733 4.64275 4.67507 4.71929 4.76503 4.80395 4.86187 4.96076 5.01450 5.07629 5.10740 5.20239 5.30115 5.39387 5.44994 5.53286 5.64141 5.78751 6.10826 6.18117 6.35540 6.73599 6.82517 6.97288 7.43607 8.90187 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.019458 B = 0.006185 C = 0.005323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.625655 B = 4526.224811 C = 5258.857776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.102 4.102 3 C 0.225 3.775 4 H 0.009 0.991 5 C -0.557 4.557 6 H 0.043 0.957 7 C 0.026 3.974 8 N -0.907 5.907 9 Si 0.943 3.057 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.275 1.275 13 N -0.668 5.668 14 C 0.165 3.835 15 H 0.045 0.955 16 C -0.123 4.123 17 C -0.230 4.230 18 S 0.166 5.834 19 C 0.027 3.973 20 C -0.074 4.074 21 N -0.499 5.499 22 C 0.046 3.954 23 C -0.075 4.075 24 H 0.031 0.969 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.061 0.939 28 H 0.026 0.974 29 H 0.262 0.738 30 H 0.325 0.675 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.523 8.300 -12.283 15.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.141 4.141 3 C 0.116 3.884 4 H 0.027 0.973 5 C -0.596 4.596 6 H 0.062 0.938 7 C -0.174 4.174 8 N -0.546 5.546 9 Si 0.769 3.231 10 H -0.203 1.203 11 H -0.207 1.207 12 H -0.200 1.200 13 N -0.298 5.298 14 C 0.053 3.947 15 H 0.063 0.937 16 C -0.182 4.182 17 C -0.351 4.351 18 S 0.422 5.578 19 C -0.251 4.251 20 C -0.134 4.134 21 N -0.215 5.215 22 C -0.086 4.086 23 C -0.135 4.135 24 H 0.050 0.950 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.044 0.956 29 H 0.071 0.929 30 H 0.142 0.858 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.120 0.880 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.608 7.779 -12.539 16.168 hybrid contribution 2.724 0.401 1.318 3.053 sum -3.884 8.181 -11.221 14.419 Atomic orbital electron populations 1.21571 0.96292 0.99918 1.00517 1.21350 0.94496 0.98252 0.99981 1.18941 0.91373 0.91566 0.86492 0.97308 1.22101 0.94099 1.38037 1.05367 0.93841 1.25551 1.01544 0.94790 0.95552 1.69983 1.36191 1.38686 1.09732 0.85796 0.81712 0.77638 0.77908 1.20307 1.20737 1.20027 1.61098 1.55517 1.04880 1.08275 1.19742 0.97881 0.88245 0.88840 0.93678 1.21719 0.95393 1.00431 1.00615 1.25907 1.05488 1.03147 1.00604 1.83797 1.43662 1.31657 0.98636 1.27714 0.97893 0.96715 1.02751 1.20589 1.05009 1.04335 0.83428 1.66185 1.22532 1.30883 1.01904 1.20380 0.99646 0.96183 0.92357 1.20347 0.98305 1.00499 0.94325 0.94971 0.92190 0.93728 0.92009 0.95557 0.92859 0.85827 0.93259 0.91755 0.91825 0.87989 0.89190 0.88203 0.91456 0.89765 0.90570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.94 9.85 71.98 0.71 -4.23 16 2 C -0.10 -4.81 5.45 30.60 0.17 -4.65 16 3 C 0.22 10.90 1.79 44.17 0.08 10.98 16 4 H 0.01 0.48 7.17 -2.38 -0.02 0.47 16 5 C -0.56 -29.79 8.21 25.60 0.21 -29.58 16 6 H 0.04 2.35 7.76 -2.91 -0.02 2.33 16 7 C 0.03 1.41 5.29 84.65 0.45 1.86 16 8 N -0.91 -50.99 11.29 21.45 0.24 -50.75 16 9 Si 0.94 43.32 29.54 68.60 2.03 45.35 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 13 N -0.67 -27.22 5.32 -477.16 -2.54 -29.76 16 14 C 0.17 6.10 2.58 44.17 0.11 6.21 16 15 H 0.05 1.90 6.23 -2.39 -0.01 1.89 16 16 C -0.12 -4.04 9.36 71.98 0.67 -3.37 16 17 C -0.23 -7.65 5.12 24.64 0.13 -7.52 16 18 S 0.17 4.53 23.05 -56.49 -1.30 3.23 16 19 C 0.03 0.70 7.39 88.52 0.65 1.35 16 20 C -0.07 -1.18 10.46 71.23 0.75 -0.43 16 21 N -0.50 -15.66 10.53 -179.41 -1.89 -17.55 16 22 C 0.05 1.53 6.74 41.52 0.28 1.81 16 23 C -0.08 -2.24 9.81 71.24 0.70 -1.54 16 24 H 0.03 1.26 8.14 -2.39 -0.02 1.25 16 25 H 0.06 2.23 7.63 -2.39 -0.02 2.21 16 26 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 3.30 5.95 -2.39 -0.01 3.28 16 28 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 30 H 0.33 13.66 8.05 -89.69 -0.72 12.94 16 31 H 0.05 1.73 7.50 -2.39 -0.02 1.71 16 32 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.08 2.22 7.04 -2.38 -0.02 2.20 16 Total: -1.00 -59.85 330.18 1.75 -58.10 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.31 Total: 20.49 kcal Atomic # 6 Polarization: -34.01 SS G_CDS: 4.91 Total: -29.11 kcal Atomic # 7 Polarization: -93.87 SS G_CDS: -4.19 Total: -98.06 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 4.53 SS G_CDS: -1.30 Total: 3.23 kcal Total: -59.85 1.75 -58.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040518604.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.753 kcal (2) G-P(sol) polarization free energy of solvation -59.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds