Wall clock time and date at job start Mon Mar 30 2020 06:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46999 * 2 1 4 4 H 1.08995 * 109.46873 * 179.47262 * 3 2 1 5 5 C 1.50701 * 109.47038 * 59.47017 * 3 2 1 6 6 H 1.07994 * 120.00182 * 240.27363 * 5 3 2 7 7 C 1.37879 * 119.99625 * 60.00404 * 5 3 2 8 8 N 1.31511 * 120.00385 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99850 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46816 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.46825 * 119.99832 * 9 7 5 12 12 H 1.48496 * 109.47205 * 239.99762 * 9 7 5 13 13 N 1.46901 * 109.47005 * 299.47144 * 3 2 1 14 14 C 1.46896 * 111.00379 * 273.27279 * 13 3 2 15 15 H 1.09007 * 109.46798 * 33.55980 * 14 13 3 16 16 C 1.52994 * 109.46942 * 273.56143 * 14 13 3 17 17 C 1.50698 * 109.47446 * 153.55737 * 14 13 3 18 18 S 1.76197 * 126.03412 * 45.02702 * 17 14 13 19 19 C 1.70979 * 90.28441 * 180.02562 * 18 17 14 20 20 C 1.50695 * 124.91852 * 179.97438 * 19 18 17 21 21 N 1.29036 * 110.16300 * 359.97438 * 19 18 17 22 22 C 1.31780 * 117.12420 * 359.72213 * 21 19 18 23 23 C 1.50698 * 122.75017 * 180.33097 * 22 21 19 24 24 H 1.08998 * 109.47512 * 303.11553 * 1 2 3 25 25 H 1.09007 * 109.47025 * 63.11612 * 1 2 3 26 26 H 1.09002 * 109.46994 * 183.11099 * 1 2 3 27 27 H 1.08999 * 109.47358 * 240.00066 * 2 1 3 28 28 H 1.09000 * 109.47049 * 119.99672 * 2 1 3 29 29 H 0.96994 * 120.00216 * 180.02562 * 8 7 5 30 30 H 1.00906 * 110.99862 * 149.31736 * 13 3 2 31 31 H 1.09005 * 109.47097 * 179.97438 * 16 14 13 32 32 H 1.08998 * 109.47353 * 299.99326 * 16 14 13 33 33 H 1.09000 * 109.47545 * 59.99825 * 16 14 13 34 34 H 1.09003 * 109.47289 * 89.99954 * 20 19 18 35 35 H 1.09005 * 109.46952 * 210.00032 * 20 19 18 36 36 H 1.08998 * 109.47207 * 329.99873 * 20 19 18 37 37 H 1.09005 * 109.47440 * 270.19880 * 23 22 21 38 38 H 1.08996 * 109.47112 * 30.19768 * 23 22 21 39 39 H 1.08998 * 109.47343 * 150.19905 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1299 1.4426 0.0095 5 6 1.5269 2.1567 1.2239 6 1 0.9033 3.0319 1.1167 7 6 1.8492 1.6895 2.4804 8 7 2.6038 0.6204 2.6109 9 14 1.2138 2.5752 3.9975 10 1 0.3932 3.7412 3.5826 11 1 0.3817 1.6446 4.8016 12 1 2.3620 3.0440 4.8142 13 7 1.5607 2.1313 -1.2058 14 6 2.4760 1.9156 -2.3343 15 1 2.9140 0.9200 -2.2616 16 6 3.5879 2.9659 -2.2970 17 6 1.7144 2.0360 -3.6290 18 16 0.5455 3.2916 -4.0311 19 6 0.2959 2.5798 -5.5655 20 6 -0.6493 3.1035 -6.6159 21 7 1.0340 1.5292 -5.6938 22 6 1.8107 1.2128 -4.6773 23 6 2.7285 0.0176 -4.6938 24 1 -0.3634 0.5614 0.8607 25 1 -0.3633 0.4647 -0.9167 26 1 -0.3633 -1.0262 0.0558 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.8302 0.2916 3.4949 30 1 1.4280 3.1162 -1.0310 31 1 4.2674 2.8055 -3.1341 32 1 3.1500 3.9614 -2.3697 33 1 4.1388 2.8788 -1.3605 34 1 -0.1227 3.8077 -7.2600 35 1 -1.0233 2.2730 -7.2147 36 1 -1.4857 3.6086 -6.1327 37 1 2.1980 -0.8532 -4.3086 38 1 3.0529 -0.1773 -5.7159 39 1 3.5984 0.2189 -4.0686 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040518605.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:56 Heat of formation + Delta-G solvation = 24.806262 kcal Electronic energy + Delta-G solvation = -18803.113151 eV Core-core repulsion = 16064.812111 eV Total energy + Delta-G solvation = -2738.301039 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.69227 -36.99083 -34.06020 -32.33407 -31.09972 -29.22137 -28.62441 -26.79498 -25.80181 -23.26179 -22.67169 -21.70235 -19.07444 -18.62778 -17.33532 -16.44634 -15.13854 -15.00912 -14.67893 -14.06641 -13.89311 -13.47918 -13.21344 -13.08493 -12.86055 -12.71211 -12.33974 -12.15369 -12.05346 -11.87754 -11.78071 -11.53827 -11.12670 -10.97093 -10.70292 -10.64656 -10.33550 -10.12093 -9.83461 -9.44326 -9.30677 -8.89277 -8.79832 -8.51993 -8.23954 -7.33580 -6.05678 -4.11059 1.03112 1.66164 2.12169 3.03888 3.26026 3.34793 3.38160 4.27756 4.37312 5.01331 5.13794 5.25345 5.34861 5.37560 5.40842 5.44786 5.62477 5.67343 5.78159 5.82557 5.96801 6.06851 6.22047 6.28501 6.44705 6.52259 6.57146 6.67016 6.84728 7.22553 7.26649 7.45819 7.70925 7.75444 7.80131 8.02538 8.20010 8.31855 8.58628 8.97247 9.53908 11.00220 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.027620 B = 0.005168 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.516838 B = 5416.215424 C = 5664.047121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.218 3.782 4 H 0.005 0.995 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.677 5.677 14 C 0.154 3.846 15 H 0.093 0.907 16 C -0.174 4.174 17 C -0.171 4.171 18 S 0.135 5.865 19 C 0.015 3.985 20 C -0.071 4.071 21 N -0.470 5.470 22 C 0.042 3.958 23 C -0.074 4.074 24 H 0.056 0.944 25 H 0.041 0.959 26 H 0.012 0.988 27 H 0.009 0.991 28 H 0.087 0.913 29 H 0.260 0.740 30 H 0.332 0.668 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.662 3.812 -13.774 14.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.141 4.141 3 C 0.110 3.890 4 H 0.022 0.978 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.137 4.137 8 N -0.526 5.526 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.212 1.212 13 N -0.307 5.307 14 C 0.040 3.960 15 H 0.111 0.889 16 C -0.233 4.233 17 C -0.293 4.293 18 S 0.390 5.610 19 C -0.262 4.262 20 C -0.131 4.131 21 N -0.186 5.186 22 C -0.089 4.089 23 C -0.133 4.133 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.032 0.968 27 H 0.028 0.972 28 H 0.105 0.895 29 H 0.070 0.930 30 H 0.150 0.850 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.477 3.779 -13.793 14.514 hybrid contribution 0.914 0.195 1.150 1.481 sum -1.563 3.973 -12.643 13.344 Atomic orbital electron populations 1.21437 0.97535 0.97345 1.01312 1.21443 0.95077 0.98187 0.99362 1.19159 0.93264 0.91448 0.85091 0.97778 1.21192 1.31533 1.12116 0.90252 0.92276 1.24866 0.95024 0.94956 0.98873 1.69884 1.36898 1.22756 1.23085 0.86533 0.78633 0.79748 0.83065 1.19777 1.21007 1.21156 1.60823 1.46790 1.16539 1.06590 1.19937 0.89778 0.99631 0.86629 0.88880 1.22505 0.99338 0.99143 1.02319 1.25964 1.03327 0.98802 1.01223 1.83868 1.37936 1.28759 1.10399 1.26778 1.02812 0.96952 0.99696 1.20324 0.96041 1.01449 0.95279 1.66060 1.07282 1.15235 1.30009 1.20019 1.00085 0.99707 0.89116 1.20291 0.96857 0.93535 1.02623 0.92542 0.94035 0.96845 0.97234 0.89489 0.92985 0.85005 0.92890 0.92758 0.91256 0.90245 0.89839 0.90453 0.90883 0.91244 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 9.52 37.16 0.35 -2.33 16 2 C -0.10 -2.43 5.58 -26.73 -0.15 -2.58 16 3 C 0.22 5.16 2.10 -68.86 -0.14 5.02 16 4 H 0.00 0.12 7.22 -51.93 -0.38 -0.26 16 5 C -0.51 -13.27 7.25 -34.44 -0.25 -13.52 16 6 H 0.06 1.53 7.59 -52.49 -0.40 1.14 16 7 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -24.45 11.32 55.43 0.63 -23.82 16 9 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 10 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.68 -13.63 5.27 -102.17 -0.54 -14.17 16 14 C 0.15 2.68 2.55 -68.87 -0.18 2.50 16 15 H 0.09 1.70 5.89 -51.93 -0.31 1.39 16 16 C -0.17 -2.72 9.13 37.15 0.34 -2.38 16 17 C -0.17 -2.82 5.47 -35.92 -0.20 -3.02 16 18 S 0.13 1.97 23.07 -107.50 -2.48 -0.51 16 19 C 0.02 0.22 7.39 -13.46 -0.10 0.12 16 20 C -0.07 -0.69 10.46 36.00 0.38 -0.32 16 21 N -0.47 -7.61 10.53 -8.06 -0.08 -7.70 16 22 C 0.04 0.68 6.74 -84.23 -0.57 0.12 16 23 C -0.07 -1.01 9.80 36.00 0.35 -0.66 16 24 H 0.06 1.36 7.09 -51.93 -0.37 0.99 16 25 H 0.04 0.91 7.72 -51.93 -0.40 0.51 16 26 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 28 H 0.09 2.30 6.08 -51.93 -0.32 1.98 16 29 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.33 6.65 7.90 -39.29 -0.31 6.34 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.81 8.13 -51.93 -0.42 0.39 16 33 H 0.07 1.17 7.56 -51.93 -0.39 0.78 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.93 7.04 -51.93 -0.37 0.57 16 LS Contribution 327.44 15.07 4.93 4.93 Total: -1.00 -28.22 327.44 -8.96 -37.18 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -6.14 Total: 3.79 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -0.25 Total: -15.42 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 0.00 Total: -45.69 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.48 Total: -0.51 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.22 -8.96 -37.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040518605.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.982 kcal (2) G-P(sol) polarization free energy of solvation -28.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds