Wall clock time and date at job start Mon Mar 30 2020 06:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46999 * 2 1 4 4 H 1.08995 * 109.46873 * 179.47262 * 3 2 1 5 5 C 1.50701 * 109.47038 * 59.47017 * 3 2 1 6 6 H 1.07994 * 120.00182 * 240.27363 * 5 3 2 7 7 C 1.37879 * 119.99625 * 60.00404 * 5 3 2 8 8 N 1.31511 * 120.00385 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99850 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46816 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.46825 * 119.99832 * 9 7 5 12 12 H 1.48496 * 109.47205 * 239.99762 * 9 7 5 13 13 N 1.46901 * 109.47005 * 299.47144 * 3 2 1 14 14 C 1.46896 * 111.00379 * 273.27279 * 13 3 2 15 15 H 1.09007 * 109.46798 * 33.55980 * 14 13 3 16 16 C 1.52994 * 109.46942 * 273.56143 * 14 13 3 17 17 C 1.50698 * 109.47446 * 153.55737 * 14 13 3 18 18 S 1.76197 * 126.03412 * 45.02702 * 17 14 13 19 19 C 1.70979 * 90.28441 * 180.02562 * 18 17 14 20 20 C 1.50695 * 124.91852 * 179.97438 * 19 18 17 21 21 N 1.29036 * 110.16300 * 359.97438 * 19 18 17 22 22 C 1.31780 * 117.12420 * 359.72213 * 21 19 18 23 23 C 1.50698 * 122.75017 * 180.33097 * 22 21 19 24 24 H 1.08998 * 109.47512 * 303.11553 * 1 2 3 25 25 H 1.09007 * 109.47025 * 63.11612 * 1 2 3 26 26 H 1.09002 * 109.46994 * 183.11099 * 1 2 3 27 27 H 1.08999 * 109.47358 * 240.00066 * 2 1 3 28 28 H 1.09000 * 109.47049 * 119.99672 * 2 1 3 29 29 H 0.96994 * 120.00216 * 180.02562 * 8 7 5 30 30 H 1.00906 * 110.99862 * 149.31736 * 13 3 2 31 31 H 1.09005 * 109.47097 * 179.97438 * 16 14 13 32 32 H 1.08998 * 109.47353 * 299.99326 * 16 14 13 33 33 H 1.09000 * 109.47545 * 59.99825 * 16 14 13 34 34 H 1.09003 * 109.47289 * 89.99954 * 20 19 18 35 35 H 1.09005 * 109.46952 * 210.00032 * 20 19 18 36 36 H 1.08998 * 109.47207 * 329.99873 * 20 19 18 37 37 H 1.09005 * 109.47440 * 270.19880 * 23 22 21 38 38 H 1.08996 * 109.47112 * 30.19768 * 23 22 21 39 39 H 1.08998 * 109.47343 * 150.19905 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1299 1.4426 0.0095 5 6 1.5269 2.1567 1.2239 6 1 0.9033 3.0319 1.1167 7 6 1.8492 1.6895 2.4804 8 7 2.6038 0.6204 2.6109 9 14 1.2138 2.5752 3.9975 10 1 0.3932 3.7412 3.5826 11 1 0.3817 1.6446 4.8016 12 1 2.3620 3.0440 4.8142 13 7 1.5607 2.1313 -1.2058 14 6 2.4760 1.9156 -2.3343 15 1 2.9140 0.9200 -2.2616 16 6 3.5879 2.9659 -2.2970 17 6 1.7144 2.0360 -3.6290 18 16 0.5455 3.2916 -4.0311 19 6 0.2959 2.5798 -5.5655 20 6 -0.6493 3.1035 -6.6159 21 7 1.0340 1.5292 -5.6938 22 6 1.8107 1.2128 -4.6773 23 6 2.7285 0.0176 -4.6938 24 1 -0.3634 0.5614 0.8607 25 1 -0.3633 0.4647 -0.9167 26 1 -0.3633 -1.0262 0.0558 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.8302 0.2916 3.4949 30 1 1.4280 3.1162 -1.0310 31 1 4.2674 2.8055 -3.1341 32 1 3.1500 3.9614 -2.3697 33 1 4.1388 2.8788 -1.3605 34 1 -0.1227 3.8077 -7.2600 35 1 -1.0233 2.2730 -7.2147 36 1 -1.4857 3.6086 -6.1327 37 1 2.1980 -0.8532 -4.3086 38 1 3.0529 -0.1773 -5.7159 39 1 3.5984 0.2189 -4.0686 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040518605.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:56 Heat of formation + Delta-G solvation = 8.410669 kcal Electronic energy + Delta-G solvation = -18803.824117 eV Core-core repulsion = 16064.812111 eV Total energy + Delta-G solvation = -2739.012006 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.87534 -38.61414 -35.69720 -33.72696 -32.84029 -30.47650 -29.95477 -28.01636 -27.67580 -25.15610 -23.78157 -23.07457 -20.88741 -19.91116 -18.55504 -18.25843 -16.90229 -16.30571 -16.01854 -15.72800 -15.39853 -14.92467 -14.49125 -14.19139 -14.12427 -14.05563 -13.86473 -13.61702 -13.40929 -13.22300 -12.98809 -12.84367 -12.74156 -12.57799 -12.40365 -12.26767 -11.94098 -11.82649 -11.65782 -11.34368 -10.78709 -10.54796 -10.50049 -10.05934 -9.42557 -9.00137 -8.08335 -6.19475 -0.13336 0.52220 0.95095 1.41185 1.44891 1.54431 1.85733 2.43704 3.21089 3.24867 3.58363 3.95324 4.14144 4.14679 4.33458 4.43956 4.61282 4.64134 4.69952 4.73825 4.77500 4.79729 4.81974 4.91224 4.97134 5.03203 5.13293 5.17708 5.31851 5.39871 5.45802 5.56387 5.73097 5.81215 5.89045 6.28466 6.47418 6.77653 6.86826 7.02650 7.49015 8.96840 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.027620 B = 0.005168 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.516838 B = 5416.215424 C = 5664.047121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.098 4.098 3 C 0.227 3.773 4 H -0.024 1.024 5 C -0.520 4.520 6 H 0.056 0.944 7 C 0.020 3.980 8 N -0.915 5.915 9 Si 0.950 3.050 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.674 5.674 14 C 0.159 3.841 15 H 0.081 0.919 16 C -0.165 4.165 17 C -0.201 4.201 18 S 0.145 5.855 19 C 0.026 3.974 20 C -0.073 4.073 21 N -0.496 5.496 22 C 0.038 3.962 23 C -0.074 4.074 24 H 0.037 0.963 25 H 0.045 0.955 26 H 0.029 0.971 27 H 0.018 0.982 28 H 0.059 0.941 29 H 0.260 0.740 30 H 0.332 0.668 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.672 4.745 -15.045 16.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.137 4.137 3 C 0.119 3.881 4 H -0.007 1.007 5 C -0.558 4.558 6 H 0.074 0.926 7 C -0.179 4.179 8 N -0.554 5.554 9 Si 0.777 3.223 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.304 5.304 14 C 0.046 3.954 15 H 0.099 0.901 16 C -0.224 4.224 17 C -0.322 4.322 18 S 0.401 5.599 19 C -0.252 4.252 20 C -0.133 4.133 21 N -0.212 5.212 22 C -0.093 4.093 23 C -0.133 4.133 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.048 0.952 27 H 0.036 0.964 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.150 0.850 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.488 4.724 -15.075 16.179 hybrid contribution 1.201 -0.081 1.430 1.869 sum -2.287 4.643 -13.646 14.594 Atomic orbital electron populations 1.21286 0.96379 0.98085 1.00560 1.21324 0.95961 0.97994 0.98378 1.18890 0.91416 0.91728 0.86089 1.00652 1.21439 1.31141 1.12020 0.91241 0.92571 1.25550 0.95301 0.95600 1.01452 1.70008 1.37948 1.23936 1.23522 0.85619 0.78038 0.78768 0.79875 1.19166 1.21039 1.20964 1.60713 1.47608 1.16220 1.05853 1.19819 0.89914 0.99499 0.86153 0.90148 1.22391 0.98959 0.98959 1.02105 1.25769 1.05051 1.00508 1.00907 1.83772 1.37278 1.28068 1.10798 1.27588 1.01876 0.95786 0.99960 1.20561 0.95934 1.02181 0.94613 1.66163 1.08405 1.16439 1.30230 1.20366 0.99983 0.99915 0.89046 1.20346 0.96696 0.92747 1.03546 0.94412 0.93563 0.95232 0.96360 0.92240 0.93079 0.85002 0.91032 0.92028 0.93027 0.88137 0.89155 0.88497 0.91042 0.89983 0.90399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.72 9.52 71.98 0.69 -4.03 16 2 C -0.10 -4.70 5.58 30.60 0.17 -4.53 16 3 C 0.23 10.93 2.10 44.17 0.09 11.03 16 4 H -0.02 -1.28 7.22 -2.39 -0.02 -1.30 16 5 C -0.52 -27.12 7.25 25.60 0.19 -26.93 16 6 H 0.06 2.91 7.59 -2.91 -0.02 2.89 16 7 C 0.02 1.08 5.30 84.66 0.45 1.53 16 8 N -0.91 -51.19 11.32 21.45 0.24 -50.94 16 9 Si 0.95 42.62 29.54 68.60 2.03 44.65 16 10 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 13 N -0.67 -27.13 5.27 -477.16 -2.51 -29.64 16 14 C 0.16 5.51 2.55 44.17 0.11 5.62 16 15 H 0.08 2.97 5.89 -2.38 -0.01 2.95 16 16 C -0.16 -5.10 9.13 71.98 0.66 -4.45 16 17 C -0.20 -6.42 5.47 24.64 0.13 -6.29 16 18 S 0.14 3.98 23.07 -56.49 -1.30 2.68 16 19 C 0.03 0.66 7.39 88.52 0.65 1.32 16 20 C -0.07 -1.19 10.46 71.23 0.75 -0.45 16 21 N -0.50 -15.19 10.53 -179.41 -1.89 -17.08 16 22 C 0.04 1.20 6.74 41.52 0.28 1.48 16 23 C -0.07 -1.97 9.80 71.24 0.70 -1.27 16 24 H 0.04 1.80 7.09 -2.39 -0.02 1.78 16 25 H 0.05 1.99 7.72 -2.38 -0.02 1.97 16 26 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.02 0.81 7.57 -2.39 -0.02 0.79 16 28 H 0.06 3.20 6.08 -2.39 -0.01 3.19 16 29 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 30 H 0.33 13.25 7.90 -89.69 -0.71 12.55 16 31 H 0.07 1.92 8.14 -2.38 -0.02 1.91 16 32 H 0.06 1.79 8.13 -2.39 -0.02 1.77 16 33 H 0.05 1.76 7.56 -2.39 -0.02 1.74 16 34 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 38 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.08 1.95 7.04 -2.39 -0.02 1.93 16 Total: -1.00 -59.68 327.44 1.76 -57.92 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.33 Total: 19.37 kcal Atomic # 6 Polarization: -31.82 SS G_CDS: 4.87 Total: -26.96 kcal Atomic # 7 Polarization: -93.50 SS G_CDS: -4.16 Total: -97.66 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: 3.98 SS G_CDS: -1.30 Total: 2.68 kcal Total: -59.68 1.76 -57.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040518605.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.327 kcal (2) G-P(sol) polarization free energy of solvation -59.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds