Wall clock time and date at job start Mon Mar 30 2020 06:37:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53002 * 109.47148 * 2 1
4 4 H 1.09007 * 109.46680 * 61.20749 * 3 2 1
5 5 N 1.46904 * 109.47310 * 301.21388 * 3 2 1
6 6 C 1.52998 * 109.47374 * 181.20694 * 3 2 1
7 7 H 1.08995 * 109.46656 * 57.21845 * 6 3 2
8 8 C 1.50700 * 109.47162 * 177.21741 * 6 3 2
9 9 C 1.33388 * 125.20082 * 254.39457 * 8 6 3
10 10 C 1.38422 * 114.91928 * 180.29466 * 9 8 6
11 11 C 1.33389 * 114.92238 * 359.48426 * 10 9 8
12 12 S 1.75880 * 125.20271 * 74.41958 * 8 6 3
13 13 N 1.46898 * 109.47338 * 297.21798 * 6 3 2
14 14 C 1.46901 * 110.99899 * 88.96095 * 13 6 3
15 15 C 1.46900 * 111.00028 * 325.01404 * 13 6 3
16 16 C 1.50695 * 109.47250 * 196.28141 * 15 13 6
17 17 H 1.07998 * 120.00014 * 359.97438 * 16 15 13
18 18 C 1.37875 * 120.00100 * 179.97438 * 16 15 13
19 19 N 1.31512 * 120.00453 * 0.02562 * 18 16 15
20 20 Si 1.86807 * 120.00077 * 179.97438 * 18 16 15
21 21 H 1.48504 * 109.47008 * 0.02562 * 20 18 16
22 22 H 1.48501 * 109.46879 * 119.99858 * 20 18 16
23 23 H 1.48498 * 109.47454 * 240.00239 * 20 18 16
24 24 H 1.08998 * 109.46747 * 179.97438 * 1 2 3
25 25 H 1.08992 * 109.47104 * 299.99959 * 1 2 3
26 26 H 1.09007 * 109.46871 * 59.99869 * 1 2 3
27 27 H 1.09004 * 109.47087 * 240.00456 * 2 1 3
28 28 H 1.08997 * 109.47267 * 120.00476 * 2 1 3
29 29 H 1.00895 * 110.99454 * 299.99145 * 5 3 2
30 30 H 1.00901 * 110.99956 * 63.94773 * 5 3 2
31 31 H 1.08003 * 122.54242 * 0.02562 * 9 8 6
32 32 H 1.08000 * 122.54085 * 179.72805 * 10 9 8
33 33 H 1.07996 * 125.20950 * 180.20547 * 11 10 9
34 34 H 1.09003 * 109.46739 * 69.15334 * 14 13 6
35 35 H 1.09005 * 109.47174 * 189.15043 * 14 13 6
36 36 H 1.08996 * 109.47319 * 309.15374 * 14 13 6
37 37 H 1.09001 * 109.46819 * 316.27922 * 15 13 6
38 38 H 1.09000 * 109.47419 * 76.27494 * 15 13 6
39 39 H 0.96997 * 120.00409 * 179.97438 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6944 1.9500 0.9007
5 7 1.5266 2.1435 -1.1845
6 6 3.5697 1.4427 -0.0304
7 1 3.9157 0.8924 -0.9053
8 6 4.0706 2.8623 -0.0994
9 6 4.5819 3.4454 -1.1846
10 6 4.9825 4.7585 -1.0073
11 6 4.7868 5.2451 0.2192
12 16 4.0711 4.0035 1.2390
13 7 4.0838 0.8007 1.1868
14 6 4.2322 -0.6482 0.9952
15 6 3.2227 1.0935 2.3403
16 6 3.9632 0.7753 3.6136
17 1 4.9724 0.3933 3.5703
18 6 3.3523 0.9719 4.8339
19 7 2.1231 1.4366 4.8868
20 14 4.2700 0.5768 6.4123
21 1 5.6268 0.0712 6.0827
22 1 4.3872 1.8058 7.2376
23 1 3.5258 -0.4601 7.1714
24 1 -0.3633 -1.0277 -0.0005
25 1 -0.3633 0.5138 0.8899
26 1 -0.3633 0.5139 -0.8900
27 1 1.8934 -0.5138 -0.8901
28 1 1.8934 -0.5139 0.8899
29 1 1.8334 1.6920 -2.0330
30 1 0.5204 2.2134 -1.1555
31 1 4.6800 2.9307 -2.1290
32 1 5.4170 5.3458 -1.8027
33 1 5.0343 6.2466 0.5385
34 1 5.0454 -0.8407 0.2952
35 1 4.4568 -1.1201 1.9518
36 1 3.3047 -1.0589 0.5963
37 1 2.9510 2.1491 2.3321
38 1 2.3198 0.4856 2.2834
39 1 1.6932 1.5746 5.7453
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000043102969.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:37:14
Heat of formation + Delta-G solvation = 45.748216 kcal
Electronic energy + Delta-G solvation = -19398.651389 eV
Core-core repulsion = 16661.258461 eV
Total energy + Delta-G solvation = -2737.392928 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 268.130 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-39.04951 -36.74246 -34.66451 -32.51065 -31.07813 -29.49744 -27.46531 -26.70828
-24.70987 -23.72676 -22.34368 -20.78805 -19.45730 -18.61193 -16.70307 -16.42428
-15.69019 -15.01480 -14.82345 -14.36002 -14.08712 -13.84991 -13.67534 -13.27811
-12.69059 -12.25359 -12.17075 -12.07693 -12.04937 -11.53610 -11.30197 -11.24391
-11.00144 -10.93346 -10.79121 -10.57709 -10.55415 -10.30733 -9.76429 -9.71756
-9.19119 -8.42524 -8.36884 -7.95501 -7.68050 -7.22319 -6.03180 -4.03611
1.74927 2.43621 2.85529 3.30698 3.38586 3.39295 3.43851 4.42350
4.76337 4.90301 5.13584 5.27681 5.32023 5.34797 5.58078 5.60807
5.69413 5.80239 5.91348 6.02433 6.06773 6.10216 6.16602 6.22433
6.31573 6.40907 6.52469 6.68680 6.72815 6.93960 7.08606 7.22354
7.27802 7.42278 7.70707 7.80172 8.05266 8.13772 8.50766 9.03618
9.60232 11.06944
Molecular weight = 268.13amu
Principal moments of inertia in cm(-1)
A = 0.015402 B = 0.008240 C = 0.006305
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1817.552174 B = 3397.056798 C = 4439.980010
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.170 4.170
3 C 0.065 3.935
4 H 0.097 0.903
5 N -0.833 5.833
6 C 0.156 3.844
7 H 0.076 0.924
8 C -0.113 4.113
9 C -0.157 4.157
10 C -0.135 4.135
11 C -0.262 4.262
12 S 0.167 5.833
13 N -0.530 5.530
14 C 0.019 3.981
15 C 0.186 3.814
16 C -0.504 4.504
17 H 0.063 0.937
18 C 0.057 3.943
19 N -0.896 5.896
20 Si 0.893 3.107
21 H -0.272 1.272
22 H -0.284 1.284
23 H -0.286 1.286
24 H 0.051 0.949
25 H 0.060 0.940
26 H 0.046 0.954
27 H 0.053 0.947
28 H 0.090 0.910
29 H 0.330 0.670
30 H 0.336 0.664
31 H 0.124 0.876
32 H 0.122 0.878
33 H 0.149 0.851
34 H 0.046 0.954
35 H 0.077 0.923
36 H 0.029 0.971
37 H 0.036 0.964
38 H 0.004 0.996
39 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.342 0.863 -11.783 11.819
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.209 4.209
3 C -0.048 4.048
4 H 0.115 0.885
5 N -0.362 5.362
6 C 0.044 3.956
7 H 0.094 0.906
8 C -0.232 4.232
9 C -0.188 4.188
10 C -0.167 4.167
11 C -0.398 4.398
12 S 0.432 5.568
13 N -0.254 5.254
14 C -0.130 4.130
15 C 0.061 3.939
16 C -0.543 4.543
17 H 0.082 0.918
18 C -0.144 4.144
19 N -0.536 5.536
20 Si 0.721 3.279
21 H -0.197 1.197
22 H -0.210 1.210
23 H -0.212 1.212
24 H 0.071 0.929
25 H 0.079 0.921
26 H 0.065 0.935
27 H 0.072 0.928
28 H 0.109 0.891
29 H 0.142 0.858
30 H 0.149 0.851
31 H 0.141 0.859
32 H 0.140 0.860
33 H 0.167 0.833
34 H 0.065 0.935
35 H 0.095 0.905
36 H 0.048 0.952
37 H 0.053 0.947
38 H 0.021 0.979
39 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -0.030 1.697 -9.755 9.902
hybrid contribution -0.414 -1.284 -0.950 1.650
sum -0.444 0.414 -10.705 10.722
Atomic orbital electron populations
1.21759 0.96031 1.01431 1.01571 1.22734 0.96247 0.98952 1.02926
1.22318 0.95386 0.92137 0.94987 0.88482 1.58906 1.15627 1.57711
1.03951 1.20124 0.90955 0.89652 0.94875 0.90582 1.24236 1.03789
0.98956 0.96239 1.19727 1.05092 0.95241 0.98712 1.19886 1.04145
0.95752 0.96920 1.25837 1.10782 1.04130 0.99038 1.85137 1.58881
1.00876 1.11900 1.62386 1.50895 1.09532 1.02598 1.22595 0.99054
0.89155 1.02164 1.19985 0.90911 0.96326 0.86702 1.21180 1.00546
1.42744 0.89822 0.91849 1.24941 0.94926 0.95436 0.99085 1.69949
1.12479 1.45834 1.25321 0.86511 0.80009 0.77956 0.83392 1.19666
1.21005 1.21217 0.92947 0.92108 0.93465 0.92790 0.89143 0.85776
0.85065 0.85854 0.85968 0.83315 0.93529 0.90457 0.95247 0.94664
0.97859 0.93018
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.04 9.55 37.16 0.35 -1.69 16
2 C -0.17 -2.58 3.90 -26.73 -0.10 -2.69 16
3 C 0.07 1.08 1.91 -67.71 -0.13 0.95 16
4 H 0.10 1.98 6.09 -51.93 -0.32 1.66 16
5 N -0.83 -11.53 8.59 -4.66 -0.04 -11.57 16
6 C 0.16 2.76 2.09 -68.87 -0.14 2.62 16
7 H 0.08 1.24 7.76 -51.93 -0.40 0.84 16
8 C -0.11 -2.07 4.92 -36.00 -0.18 -2.25 16
9 C -0.16 -2.58 10.03 -41.21 -0.41 -2.99 16
10 C -0.14 -2.12 10.18 -41.21 -0.42 -2.54 16
11 C -0.26 -4.32 11.23 29.04 0.33 -3.99 16
12 S 0.17 3.27 20.73 -107.50 -2.23 1.04 16
13 N -0.53 -10.95 4.47 -237.73 -1.06 -12.01 16
14 C 0.02 0.34 8.99 60.07 0.54 0.88 16
15 C 0.19 4.50 2.92 -4.98 -0.01 4.49 16
16 C -0.50 -13.68 8.42 -34.44 -0.29 -13.97 16
17 H 0.06 1.74 7.63 -52.49 -0.40 1.34 16
18 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16
19 N -0.90 -25.71 13.29 55.43 0.74 -24.97 16
20 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16
21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16
22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16
23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16
24 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16
25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16
26 H 0.05 0.54 6.75 -51.92 -0.35 0.19 16
27 H 0.05 0.74 8.03 -51.93 -0.42 0.32 16
28 H 0.09 1.62 3.94 -51.93 -0.20 1.42 16
29 H 0.33 3.98 9.00 -39.29 -0.35 3.63 16
30 H 0.34 4.23 7.36 -39.29 -0.29 3.94 16
31 H 0.12 1.77 8.06 -52.48 -0.42 1.34 16
32 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16
33 H 0.15 2.08 8.06 -52.49 -0.42 1.66 16
34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16
35 H 0.08 1.54 7.11 -51.93 -0.37 1.17 16
36 H 0.03 0.49 4.43 -51.93 -0.23 0.26 16
37 H 0.04 0.92 4.77 -51.93 -0.25 0.67 16
38 H 0.00 0.10 5.51 -51.93 -0.29 -0.19 16
39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16
LS Contribution 312.83 15.07 4.71 4.71
Total: -1.00 -28.66 312.83 -9.01 -37.67
By element:
Atomic # 1 Polarization: 13.98 SS G_CDS: -5.54 Total: 8.44 kcal
Atomic # 6 Polarization: -19.12 SS G_CDS: -0.57 Total: -19.69 kcal
Atomic # 7 Polarization: -48.19 SS G_CDS: -0.37 Total: -48.55 kcal
Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal
Atomic # 16 Polarization: 3.27 SS G_CDS: -2.23 Total: 1.04 kcal
Total LS contribution 4.71 Total: 4.71 kcal
Total: -28.66 -9.01 -37.67 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000043102969.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.420 kcal
(2) G-P(sol) polarization free energy of solvation -28.661 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.759 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.672 kcal
(6) G-S(sol) free energy of system = (1) + (5) 45.748 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds