Wall clock time and date at job start Mon Mar 30 2020 06:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47148 * 2 1 4 4 H 1.09007 * 109.46680 * 61.20749 * 3 2 1 5 5 N 1.46904 * 109.47310 * 301.21388 * 3 2 1 6 6 C 1.52998 * 109.47374 * 181.20694 * 3 2 1 7 7 H 1.08995 * 109.46656 * 57.21845 * 6 3 2 8 8 C 1.50700 * 109.47162 * 177.21741 * 6 3 2 9 9 C 1.33388 * 125.20082 * 254.39457 * 8 6 3 10 10 C 1.38422 * 114.91928 * 180.29466 * 9 8 6 11 11 C 1.33389 * 114.92238 * 359.48426 * 10 9 8 12 12 S 1.75880 * 125.20271 * 74.41958 * 8 6 3 13 13 N 1.46898 * 109.47338 * 297.21798 * 6 3 2 14 14 C 1.46901 * 110.99899 * 88.96095 * 13 6 3 15 15 C 1.46900 * 111.00028 * 325.01404 * 13 6 3 16 16 C 1.50695 * 109.47250 * 196.28141 * 15 13 6 17 17 H 1.07998 * 120.00014 * 359.97438 * 16 15 13 18 18 C 1.37875 * 120.00100 * 179.97438 * 16 15 13 19 19 N 1.31512 * 120.00453 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00077 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47008 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46879 * 119.99858 * 20 18 16 23 23 H 1.48498 * 109.47454 * 240.00239 * 20 18 16 24 24 H 1.08998 * 109.46747 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47104 * 299.99959 * 1 2 3 26 26 H 1.09007 * 109.46871 * 59.99869 * 1 2 3 27 27 H 1.09004 * 109.47087 * 240.00456 * 2 1 3 28 28 H 1.08997 * 109.47267 * 120.00476 * 2 1 3 29 29 H 1.00895 * 110.99454 * 299.99145 * 5 3 2 30 30 H 1.00901 * 110.99956 * 63.94773 * 5 3 2 31 31 H 1.08003 * 122.54242 * 0.02562 * 9 8 6 32 32 H 1.08000 * 122.54085 * 179.72805 * 10 9 8 33 33 H 1.07996 * 125.20950 * 180.20547 * 11 10 9 34 34 H 1.09003 * 109.46739 * 69.15334 * 14 13 6 35 35 H 1.09005 * 109.47174 * 189.15043 * 14 13 6 36 36 H 1.08996 * 109.47319 * 309.15374 * 14 13 6 37 37 H 1.09001 * 109.46819 * 316.27922 * 15 13 6 38 38 H 1.09000 * 109.47419 * 76.27494 * 15 13 6 39 39 H 0.96997 * 120.00409 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6944 1.9500 0.9007 5 7 1.5266 2.1435 -1.1845 6 6 3.5697 1.4427 -0.0304 7 1 3.9157 0.8924 -0.9053 8 6 4.0706 2.8623 -0.0994 9 6 4.5819 3.4454 -1.1846 10 6 4.9825 4.7585 -1.0073 11 6 4.7868 5.2451 0.2192 12 16 4.0711 4.0035 1.2390 13 7 4.0838 0.8007 1.1868 14 6 4.2322 -0.6482 0.9952 15 6 3.2227 1.0935 2.3403 16 6 3.9632 0.7753 3.6136 17 1 4.9724 0.3933 3.5703 18 6 3.3523 0.9719 4.8339 19 7 2.1231 1.4366 4.8868 20 14 4.2700 0.5768 6.4123 21 1 5.6268 0.0712 6.0827 22 1 4.3872 1.8058 7.2376 23 1 3.5258 -0.4601 7.1714 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.8334 1.6920 -2.0330 30 1 0.5204 2.2134 -1.1555 31 1 4.6800 2.9307 -2.1290 32 1 5.4170 5.3458 -1.8027 33 1 5.0343 6.2466 0.5385 34 1 5.0454 -0.8407 0.2952 35 1 4.4568 -1.1201 1.9518 36 1 3.3047 -1.0589 0.5963 37 1 2.9510 2.1491 2.3321 38 1 2.3198 0.4856 2.2834 39 1 1.6932 1.5746 5.7453 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043102969.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:14 Heat of formation + Delta-G solvation = 45.748216 kcal Electronic energy + Delta-G solvation = -19398.651389 eV Core-core repulsion = 16661.258461 eV Total energy + Delta-G solvation = -2737.392928 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.04951 -36.74246 -34.66451 -32.51065 -31.07813 -29.49744 -27.46531 -26.70828 -24.70987 -23.72676 -22.34368 -20.78805 -19.45730 -18.61193 -16.70307 -16.42428 -15.69019 -15.01480 -14.82345 -14.36002 -14.08712 -13.84991 -13.67534 -13.27811 -12.69059 -12.25359 -12.17075 -12.07693 -12.04937 -11.53610 -11.30197 -11.24391 -11.00144 -10.93346 -10.79121 -10.57709 -10.55415 -10.30733 -9.76429 -9.71756 -9.19119 -8.42524 -8.36884 -7.95501 -7.68050 -7.22319 -6.03180 -4.03611 1.74927 2.43621 2.85529 3.30698 3.38586 3.39295 3.43851 4.42350 4.76337 4.90301 5.13584 5.27681 5.32023 5.34797 5.58078 5.60807 5.69413 5.80239 5.91348 6.02433 6.06773 6.10216 6.16602 6.22433 6.31573 6.40907 6.52469 6.68680 6.72815 6.93960 7.08606 7.22354 7.27802 7.42278 7.70707 7.80172 8.05266 8.13772 8.50766 9.03618 9.60232 11.06944 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.015402 B = 0.008240 C = 0.006305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.552174 B = 3397.056798 C = 4439.980010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.170 4.170 3 C 0.065 3.935 4 H 0.097 0.903 5 N -0.833 5.833 6 C 0.156 3.844 7 H 0.076 0.924 8 C -0.113 4.113 9 C -0.157 4.157 10 C -0.135 4.135 11 C -0.262 4.262 12 S 0.167 5.833 13 N -0.530 5.530 14 C 0.019 3.981 15 C 0.186 3.814 16 C -0.504 4.504 17 H 0.063 0.937 18 C 0.057 3.943 19 N -0.896 5.896 20 Si 0.893 3.107 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.286 1.286 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.090 0.910 29 H 0.330 0.670 30 H 0.336 0.664 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.149 0.851 34 H 0.046 0.954 35 H 0.077 0.923 36 H 0.029 0.971 37 H 0.036 0.964 38 H 0.004 0.996 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.342 0.863 -11.783 11.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.209 4.209 3 C -0.048 4.048 4 H 0.115 0.885 5 N -0.362 5.362 6 C 0.044 3.956 7 H 0.094 0.906 8 C -0.232 4.232 9 C -0.188 4.188 10 C -0.167 4.167 11 C -0.398 4.398 12 S 0.432 5.568 13 N -0.254 5.254 14 C -0.130 4.130 15 C 0.061 3.939 16 C -0.543 4.543 17 H 0.082 0.918 18 C -0.144 4.144 19 N -0.536 5.536 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.212 1.212 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.109 0.891 29 H 0.142 0.858 30 H 0.149 0.851 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.167 0.833 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.048 0.952 37 H 0.053 0.947 38 H 0.021 0.979 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.030 1.697 -9.755 9.902 hybrid contribution -0.414 -1.284 -0.950 1.650 sum -0.444 0.414 -10.705 10.722 Atomic orbital electron populations 1.21759 0.96031 1.01431 1.01571 1.22734 0.96247 0.98952 1.02926 1.22318 0.95386 0.92137 0.94987 0.88482 1.58906 1.15627 1.57711 1.03951 1.20124 0.90955 0.89652 0.94875 0.90582 1.24236 1.03789 0.98956 0.96239 1.19727 1.05092 0.95241 0.98712 1.19886 1.04145 0.95752 0.96920 1.25837 1.10782 1.04130 0.99038 1.85137 1.58881 1.00876 1.11900 1.62386 1.50895 1.09532 1.02598 1.22595 0.99054 0.89155 1.02164 1.19985 0.90911 0.96326 0.86702 1.21180 1.00546 1.42744 0.89822 0.91849 1.24941 0.94926 0.95436 0.99085 1.69949 1.12479 1.45834 1.25321 0.86511 0.80009 0.77956 0.83392 1.19666 1.21005 1.21217 0.92947 0.92108 0.93465 0.92790 0.89143 0.85776 0.85065 0.85854 0.85968 0.83315 0.93529 0.90457 0.95247 0.94664 0.97859 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.55 37.16 0.35 -1.69 16 2 C -0.17 -2.58 3.90 -26.73 -0.10 -2.69 16 3 C 0.07 1.08 1.91 -67.71 -0.13 0.95 16 4 H 0.10 1.98 6.09 -51.93 -0.32 1.66 16 5 N -0.83 -11.53 8.59 -4.66 -0.04 -11.57 16 6 C 0.16 2.76 2.09 -68.87 -0.14 2.62 16 7 H 0.08 1.24 7.76 -51.93 -0.40 0.84 16 8 C -0.11 -2.07 4.92 -36.00 -0.18 -2.25 16 9 C -0.16 -2.58 10.03 -41.21 -0.41 -2.99 16 10 C -0.14 -2.12 10.18 -41.21 -0.42 -2.54 16 11 C -0.26 -4.32 11.23 29.04 0.33 -3.99 16 12 S 0.17 3.27 20.73 -107.50 -2.23 1.04 16 13 N -0.53 -10.95 4.47 -237.73 -1.06 -12.01 16 14 C 0.02 0.34 8.99 60.07 0.54 0.88 16 15 C 0.19 4.50 2.92 -4.98 -0.01 4.49 16 16 C -0.50 -13.68 8.42 -34.44 -0.29 -13.97 16 17 H 0.06 1.74 7.63 -52.49 -0.40 1.34 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -25.71 13.29 55.43 0.74 -24.97 16 20 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.05 0.54 6.75 -51.92 -0.35 0.19 16 27 H 0.05 0.74 8.03 -51.93 -0.42 0.32 16 28 H 0.09 1.62 3.94 -51.93 -0.20 1.42 16 29 H 0.33 3.98 9.00 -39.29 -0.35 3.63 16 30 H 0.34 4.23 7.36 -39.29 -0.29 3.94 16 31 H 0.12 1.77 8.06 -52.48 -0.42 1.34 16 32 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 33 H 0.15 2.08 8.06 -52.49 -0.42 1.66 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.08 1.54 7.11 -51.93 -0.37 1.17 16 36 H 0.03 0.49 4.43 -51.93 -0.23 0.26 16 37 H 0.04 0.92 4.77 -51.93 -0.25 0.67 16 38 H 0.00 0.10 5.51 -51.93 -0.29 -0.19 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 312.83 15.07 4.71 4.71 Total: -1.00 -28.66 312.83 -9.01 -37.67 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -5.54 Total: 8.44 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: -0.57 Total: -19.69 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: -0.37 Total: -48.55 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -2.23 Total: 1.04 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.66 -9.01 -37.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043102969.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.420 kcal (2) G-P(sol) polarization free energy of solvation -28.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds