Wall clock time and date at job start Mon Mar 30 2020 06:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47148 * 2 1 4 4 H 1.09007 * 109.46680 * 61.20749 * 3 2 1 5 5 N 1.46904 * 109.47310 * 301.21388 * 3 2 1 6 6 C 1.52998 * 109.47374 * 181.20694 * 3 2 1 7 7 H 1.08995 * 109.46656 * 57.21845 * 6 3 2 8 8 C 1.50700 * 109.47162 * 177.21741 * 6 3 2 9 9 C 1.33388 * 125.20082 * 254.39457 * 8 6 3 10 10 C 1.38422 * 114.91928 * 180.29466 * 9 8 6 11 11 C 1.33389 * 114.92238 * 359.48426 * 10 9 8 12 12 S 1.75880 * 125.20271 * 74.41958 * 8 6 3 13 13 N 1.46898 * 109.47338 * 297.21798 * 6 3 2 14 14 C 1.46901 * 110.99899 * 88.96095 * 13 6 3 15 15 C 1.46900 * 111.00028 * 325.01404 * 13 6 3 16 16 C 1.50695 * 109.47250 * 196.28141 * 15 13 6 17 17 H 1.07998 * 120.00014 * 359.97438 * 16 15 13 18 18 C 1.37875 * 120.00100 * 179.97438 * 16 15 13 19 19 N 1.31512 * 120.00453 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00077 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47008 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46879 * 119.99858 * 20 18 16 23 23 H 1.48498 * 109.47454 * 240.00239 * 20 18 16 24 24 H 1.08998 * 109.46747 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47104 * 299.99959 * 1 2 3 26 26 H 1.09007 * 109.46871 * 59.99869 * 1 2 3 27 27 H 1.09004 * 109.47087 * 240.00456 * 2 1 3 28 28 H 1.08997 * 109.47267 * 120.00476 * 2 1 3 29 29 H 1.00895 * 110.99454 * 299.99145 * 5 3 2 30 30 H 1.00901 * 110.99956 * 63.94773 * 5 3 2 31 31 H 1.08003 * 122.54242 * 0.02562 * 9 8 6 32 32 H 1.08000 * 122.54085 * 179.72805 * 10 9 8 33 33 H 1.07996 * 125.20950 * 180.20547 * 11 10 9 34 34 H 1.09003 * 109.46739 * 69.15334 * 14 13 6 35 35 H 1.09005 * 109.47174 * 189.15043 * 14 13 6 36 36 H 1.08996 * 109.47319 * 309.15374 * 14 13 6 37 37 H 1.09001 * 109.46819 * 316.27922 * 15 13 6 38 38 H 1.09000 * 109.47419 * 76.27494 * 15 13 6 39 39 H 0.96997 * 120.00409 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6944 1.9500 0.9007 5 7 1.5266 2.1435 -1.1845 6 6 3.5697 1.4427 -0.0304 7 1 3.9157 0.8924 -0.9053 8 6 4.0706 2.8623 -0.0994 9 6 4.5819 3.4454 -1.1846 10 6 4.9825 4.7585 -1.0073 11 6 4.7868 5.2451 0.2192 12 16 4.0711 4.0035 1.2390 13 7 4.0838 0.8007 1.1868 14 6 4.2322 -0.6482 0.9952 15 6 3.2227 1.0935 2.3403 16 6 3.9632 0.7753 3.6136 17 1 4.9724 0.3933 3.5703 18 6 3.3523 0.9719 4.8339 19 7 2.1231 1.4366 4.8868 20 14 4.2700 0.5768 6.4123 21 1 5.6268 0.0712 6.0827 22 1 4.3872 1.8058 7.2376 23 1 3.5258 -0.4601 7.1714 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.8334 1.6920 -2.0330 30 1 0.5204 2.2134 -1.1555 31 1 4.6800 2.9307 -2.1290 32 1 5.4170 5.3458 -1.8027 33 1 5.0343 6.2466 0.5385 34 1 5.0454 -0.8407 0.2952 35 1 4.4568 -1.1201 1.9518 36 1 3.3047 -1.0589 0.5963 37 1 2.9510 2.1491 2.3321 38 1 2.3198 0.4856 2.2834 39 1 1.6932 1.5746 5.7453 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043102969.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:14 Heat of formation + Delta-G solvation = 26.106768 kcal Electronic energy + Delta-G solvation = -19399.503106 eV Core-core repulsion = 16661.258461 eV Total energy + Delta-G solvation = -2738.244645 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.47407 -38.05184 -36.13345 -34.50999 -32.35173 -30.79927 -29.35639 -28.04947 -26.15896 -25.34239 -23.84872 -22.17010 -20.93787 -19.90739 -18.60557 -17.79843 -17.16013 -16.73423 -16.26058 -15.96466 -15.38829 -15.27551 -15.00108 -14.71053 -14.13373 -13.98800 -13.62072 -13.45978 -13.35272 -12.93746 -12.87768 -12.73416 -12.60072 -12.51551 -12.32953 -12.23028 -12.04847 -11.74661 -11.45591 -11.28139 -11.05187 -10.50771 -9.52353 -9.29997 -9.14122 -8.83205 -8.14306 -6.21740 0.42711 1.05926 1.38413 1.40766 1.52282 1.52747 2.12680 2.42275 3.17958 3.36563 3.65498 3.77758 4.05784 4.10825 4.29613 4.34232 4.42384 4.53107 4.64973 4.72800 4.81046 4.82159 4.90867 4.92974 5.01542 5.15713 5.20651 5.26032 5.35971 5.40004 5.46853 5.63591 5.70678 5.88962 6.14995 6.25431 6.42321 6.67765 6.72734 6.93426 7.46050 8.94897 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.015402 B = 0.008240 C = 0.006305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.552174 B = 3397.056798 C = 4439.980010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.164 4.164 3 C 0.080 3.920 4 H 0.050 0.950 5 N -0.829 5.829 6 C 0.156 3.844 7 H 0.100 0.900 8 C -0.124 4.124 9 C -0.147 4.147 10 C -0.131 4.131 11 C -0.251 4.251 12 S 0.064 5.936 13 N -0.543 5.543 14 C 0.019 3.981 15 C 0.208 3.792 16 C -0.517 4.517 17 H 0.054 0.946 18 C 0.008 3.992 19 N -0.928 5.928 20 Si 0.954 3.046 21 H -0.267 1.267 22 H -0.282 1.282 23 H -0.279 1.279 24 H 0.064 0.936 25 H 0.034 0.966 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.346 0.654 30 H 0.344 0.656 31 H 0.153 0.847 32 H 0.160 0.840 33 H 0.171 0.829 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.045 0.955 37 H 0.019 0.981 38 H -0.018 1.018 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.548 0.758 -14.330 14.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.203 4.203 3 C -0.034 4.034 4 H 0.068 0.932 5 N -0.361 5.361 6 C 0.045 3.955 7 H 0.118 0.882 8 C -0.242 4.242 9 C -0.177 4.177 10 C -0.162 4.162 11 C -0.386 4.386 12 S 0.328 5.672 13 N -0.267 5.267 14 C -0.128 4.128 15 C 0.082 3.918 16 C -0.555 4.555 17 H 0.072 0.928 18 C -0.190 4.190 19 N -0.569 5.569 20 Si 0.780 3.220 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.205 1.205 24 H 0.083 0.917 25 H 0.053 0.947 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.077 0.923 29 H 0.160 0.840 30 H 0.159 0.841 31 H 0.171 0.829 32 H 0.177 0.823 33 H 0.189 0.811 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.036 0.964 38 H 0.000 1.000 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.866 1.580 -12.330 12.461 hybrid contribution -0.661 -1.198 -0.292 1.398 sum 0.206 0.383 -12.622 12.630 Atomic orbital electron populations 1.21720 0.94857 1.02239 1.01517 1.22643 0.97324 0.97894 1.02453 1.21924 0.94713 0.92528 0.94256 0.93166 1.58779 1.16323 1.57424 1.03539 1.20205 0.91628 0.89591 0.94045 0.88188 1.24285 1.05445 0.98811 0.95703 1.20130 1.03023 0.95572 0.99002 1.20313 1.02900 0.95684 0.97282 1.26004 1.10157 1.04016 0.98462 1.85509 1.61536 1.04550 1.15584 1.62262 1.50376 1.11028 1.02986 1.22609 1.00806 0.87799 1.01611 1.19549 0.90136 0.94815 0.87349 1.21498 1.00256 1.42245 0.91521 0.92819 1.25707 0.95690 0.95431 1.02198 1.70065 1.13834 1.46979 1.25989 0.85556 0.78983 0.77800 0.79639 1.19152 1.20785 1.20456 0.91720 0.94724 0.90912 0.90213 0.92296 0.84004 0.84138 0.82911 0.82283 0.81108 0.90913 0.92906 0.93645 0.96371 1.00004 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 9.55 71.98 0.69 -3.15 16 2 C -0.16 -4.86 3.90 30.60 0.12 -4.75 16 3 C 0.08 2.62 1.91 44.91 0.09 2.70 16 4 H 0.05 2.16 6.09 -2.38 -0.01 2.14 16 5 N -0.83 -21.39 8.59 -168.66 -1.45 -22.84 16 6 C 0.16 5.40 2.09 44.17 0.09 5.49 16 7 H 0.10 2.95 7.76 -2.39 -0.02 2.93 16 8 C -0.12 -4.41 4.92 24.59 0.12 -4.28 16 9 C -0.15 -4.35 10.03 21.22 0.21 -4.13 16 10 C -0.13 -3.64 10.18 21.22 0.22 -3.43 16 11 C -0.25 -7.87 11.23 66.72 0.75 -7.12 16 12 S 0.06 2.59 20.73 -56.49 -1.17 1.42 16 13 N -0.54 -22.66 4.47 -906.06 -4.05 -26.71 16 14 C 0.02 0.71 8.99 127.69 1.15 1.85 16 15 C 0.21 10.53 2.92 85.56 0.25 10.78 16 16 C -0.52 -29.12 8.42 25.60 0.22 -28.91 16 17 H 0.05 3.05 7.63 -2.91 -0.02 3.03 16 18 C 0.01 0.45 5.46 84.65 0.46 0.91 16 19 N -0.93 -55.33 13.29 21.45 0.28 -55.05 16 20 Si 0.95 44.96 29.54 68.60 2.03 46.99 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 24 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.07 1.52 6.75 -2.38 -0.02 1.50 16 27 H 0.08 1.95 8.03 -2.38 -0.02 1.93 16 28 H 0.06 2.15 3.94 -2.39 -0.01 2.14 16 29 H 0.35 7.14 9.00 -89.70 -0.81 6.33 16 30 H 0.34 8.07 7.36 -89.69 -0.66 7.41 16 31 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 32 H 0.16 3.30 8.06 -2.91 -0.02 3.27 16 33 H 0.17 4.45 8.06 -2.91 -0.02 4.43 16 34 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.05 2.14 7.11 -2.38 -0.02 2.13 16 36 H 0.05 1.49 4.43 -2.39 -0.01 1.48 16 37 H 0.02 1.01 4.77 -2.39 -0.01 1.00 16 38 H -0.02 -0.95 5.51 -2.39 -0.01 -0.96 16 39 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -64.66 312.83 -0.40 -65.07 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: -0.40 Total: 25.17 kcal Atomic # 6 Polarization: -38.39 SS G_CDS: 4.36 Total: -34.04 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -5.22 Total: -104.60 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -1.17 Total: 1.42 kcal Total: -64.66 -0.40 -65.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043102969.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.172 kcal (2) G-P(sol) polarization free energy of solvation -64.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds