Wall clock time and date at job start Mon Mar 30 2020 06:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47416 * 2 1 4 4 H 1.09003 * 109.47141 * 305.00271 * 3 2 1 5 5 N 1.46896 * 109.47013 * 64.99932 * 3 2 1 6 6 C 1.52996 * 109.47017 * 185.00231 * 3 2 1 7 7 H 1.09000 * 109.47607 * 303.53696 * 6 3 2 8 8 C 1.50694 * 109.47478 * 63.54118 * 6 3 2 9 9 C 1.33384 * 125.20459 * 253.42196 * 8 6 3 10 10 C 1.38424 * 114.92730 * 180.02562 * 9 8 6 11 11 C 1.33393 * 114.91651 * 359.97438 * 10 9 8 12 12 S 1.75882 * 109.59512 * 0.02562 * 11 10 9 13 13 N 1.46907 * 109.47140 * 183.53857 * 6 3 2 14 14 C 1.46906 * 110.99949 * 315.72141 * 13 6 3 15 15 C 1.46905 * 110.99983 * 79.66976 * 13 6 3 16 16 C 1.50697 * 109.47107 * 169.99999 * 15 13 6 17 17 H 1.07998 * 120.00158 * 0.02562 * 16 15 13 18 18 C 1.37881 * 119.99751 * 180.02562 * 16 15 13 19 19 N 1.31514 * 119.99627 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00210 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47173 * 89.99801 * 20 18 16 22 22 H 1.48500 * 109.47324 * 210.00163 * 20 18 16 23 23 H 1.48501 * 109.47308 * 330.00315 * 20 18 16 24 24 H 1.08997 * 109.47198 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46788 * 300.00306 * 1 2 3 26 26 H 1.08998 * 109.46863 * 59.99594 * 1 2 3 27 27 H 1.09009 * 109.46686 * 239.99996 * 2 1 3 28 28 H 1.08998 * 109.46863 * 120.00406 * 2 1 3 29 29 H 1.00902 * 111.00380 * 296.04353 * 5 3 2 30 30 H 1.00899 * 111.00115 * 60.00516 * 5 3 2 31 31 H 1.08006 * 122.54086 * 359.97438 * 9 8 6 32 32 H 1.07995 * 122.54407 * 179.97438 * 10 9 8 33 33 H 1.08004 * 125.20223 * 180.02562 * 11 10 9 34 34 H 1.08993 * 109.47182 * 55.21353 * 14 13 6 35 35 H 1.09001 * 109.47180 * 175.21530 * 14 13 6 36 36 H 1.09002 * 109.46603 * 295.21673 * 14 13 6 37 37 H 1.08997 * 109.47281 * 290.00707 * 15 13 6 38 38 H 1.09003 * 109.46600 * 49.99830 * 15 13 6 39 39 H 0.97001 * 119.99508 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 7 1.6515 2.0992 1.2552 6 6 3.5649 1.4442 -0.1258 7 1 3.9968 0.8522 0.6811 8 6 3.9602 0.8490 -1.4525 9 6 4.4989 -0.3593 -1.6234 10 6 4.7804 -0.6920 -2.9372 11 6 4.4697 0.2459 -3.8334 12 16 3.7823 1.6413 -3.0128 13 7 4.0617 2.8240 -0.0407 14 6 3.2407 3.7303 -0.8548 15 6 4.1198 3.2775 1.3554 16 6 4.8564 4.5902 1.4269 17 1 5.2425 5.0427 0.5254 18 6 5.0376 5.2137 2.6433 19 7 5.6800 6.3595 2.7056 20 14 4.3705 4.4309 4.2026 21 1 5.4017 3.5367 4.7879 22 1 4.0236 5.4932 5.1806 23 1 3.1558 3.6402 3.8791 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 0.6477 2.1684 1.3315 30 1 2.0424 1.6179 2.0512 31 1 4.7010 -1.0271 -0.7990 32 1 5.2183 -1.6392 -3.2156 33 1 4.6177 0.1613 -4.8999 34 1 2.1967 3.6436 -0.5541 35 1 3.5772 4.7565 -0.7074 36 1 3.3391 3.4631 -1.9070 37 1 3.1073 3.4077 1.7376 38 1 4.6425 2.5342 1.9573 39 1 5.8077 6.7979 3.5615 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043102973.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:18 Heat of formation + Delta-G solvation = 48.944514 kcal Electronic energy + Delta-G solvation = -19243.598288 eV Core-core repulsion = 16506.343962 eV Total energy + Delta-G solvation = -2737.254326 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.09854 -37.02841 -34.88353 -32.39866 -30.77542 -30.34944 -27.77005 -26.77207 -25.02992 -23.72402 -22.16006 -20.62481 -19.72221 -18.97116 -17.15213 -16.49544 -15.68947 -15.30315 -14.96165 -14.68457 -14.32206 -14.09727 -13.77059 -13.00289 -12.91698 -12.57551 -12.50653 -12.29891 -12.17263 -11.87736 -11.65549 -11.31874 -11.23395 -11.10869 -10.84775 -10.69349 -10.45299 -10.28493 -9.91582 -9.76955 -9.16319 -8.60145 -8.41643 -8.35778 -8.16567 -7.00058 -5.92453 -3.86564 1.28445 1.94129 2.34138 2.98354 3.36422 3.43446 3.46666 4.52952 4.59449 4.70885 4.97504 5.02007 5.11616 5.23919 5.36692 5.42688 5.51792 5.60725 5.70975 5.73249 5.77778 5.89065 5.91490 6.12241 6.15550 6.22154 6.35441 6.47540 6.55647 6.73192 6.81962 7.08443 7.30830 7.45383 7.64507 7.75611 8.02847 8.18534 8.80641 9.16977 9.70411 11.21273 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.020042 B = 0.006702 C = 0.005643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.738515 B = 4176.727996 C = 4960.665575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.159 4.159 3 C 0.065 3.935 4 H 0.085 0.915 5 N -0.827 5.827 6 C 0.150 3.850 7 H 0.087 0.913 8 C -0.131 4.131 9 C -0.154 4.154 10 C -0.132 4.132 11 C -0.249 4.249 12 S 0.127 5.873 13 N -0.512 5.512 14 C 0.030 3.970 15 C 0.149 3.851 16 C -0.502 4.502 17 H 0.076 0.924 18 C 0.065 3.935 19 N -0.907 5.907 20 Si 0.876 3.124 21 H -0.282 1.282 22 H -0.291 1.291 23 H -0.261 1.261 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.334 0.666 30 H 0.341 0.659 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.154 0.846 34 H 0.035 0.965 35 H 0.082 0.918 36 H 0.040 0.960 37 H 0.046 0.954 38 H 0.009 0.991 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.201 -14.747 -8.670 19.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.200 4.200 3 C -0.048 4.048 4 H 0.103 0.897 5 N -0.357 5.357 6 C 0.038 3.962 7 H 0.105 0.895 8 C -0.249 4.249 9 C -0.185 4.185 10 C -0.163 4.163 11 C -0.384 4.384 12 S 0.391 5.609 13 N -0.234 5.234 14 C -0.119 4.119 15 C 0.023 3.977 16 C -0.541 4.541 17 H 0.094 0.906 18 C -0.136 4.136 19 N -0.547 5.547 20 Si 0.703 3.297 21 H -0.208 1.208 22 H -0.217 1.217 23 H -0.185 1.185 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.148 0.852 30 H 0.154 0.846 31 H 0.150 0.850 32 H 0.147 0.853 33 H 0.172 0.828 34 H 0.054 0.946 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.027 0.973 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.806 -12.546 -9.497 18.031 hybrid contribution -0.774 -2.727 1.826 3.371 sum -9.580 -15.272 -7.671 19.592 Atomic orbital electron populations 1.21766 0.96074 1.01401 1.01613 1.22384 0.95953 0.99014 1.02608 1.22242 0.96625 0.92057 0.93924 0.89692 1.59120 1.15427 1.57498 1.03620 1.20245 0.91253 0.93541 0.91177 0.89498 1.24510 1.05235 0.97324 0.97880 1.19987 1.04046 0.97035 0.97408 1.20012 1.03538 1.00375 0.92406 1.25893 1.09932 0.99301 1.03245 1.84470 1.61416 1.17363 0.97661 1.62267 1.48774 0.98215 1.14137 1.22452 0.95985 0.99000 0.94457 1.20523 0.98189 0.95502 0.83476 1.21131 1.34325 1.03522 0.95077 0.90638 1.24871 0.95193 0.94813 0.98687 1.69911 1.42744 1.16761 1.25332 0.86846 0.80042 0.79176 0.83598 1.20769 1.21744 1.18550 0.92925 0.93012 0.92695 0.91126 0.92240 0.85170 0.84589 0.84975 0.85266 0.82842 0.94629 0.89944 0.94208 0.93609 0.97322 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.68 37.16 0.36 -1.13 16 2 C -0.16 -1.83 5.46 -26.73 -0.15 -1.97 16 3 C 0.07 0.91 1.57 -67.72 -0.11 0.80 16 4 H 0.09 1.25 6.49 -51.93 -0.34 0.91 16 5 N -0.83 -12.01 5.59 -4.67 -0.03 -12.04 16 6 C 0.15 2.48 2.08 -68.87 -0.14 2.34 16 7 H 0.09 1.47 7.70 -51.93 -0.40 1.07 16 8 C -0.13 -2.00 4.40 -36.01 -0.16 -2.15 16 9 C -0.15 -2.13 9.56 -41.21 -0.39 -2.52 16 10 C -0.13 -1.66 10.18 -41.21 -0.42 -2.08 16 11 C -0.25 -3.14 11.23 29.04 0.33 -2.81 16 12 S 0.13 1.83 19.92 -107.50 -2.14 -0.32 16 13 N -0.51 -10.57 4.62 -237.72 -1.10 -11.67 16 14 C 0.03 0.58 8.43 60.07 0.51 1.09 16 15 C 0.15 3.53 3.14 -4.97 -0.02 3.51 16 16 C -0.50 -14.37 8.94 -34.44 -0.31 -14.68 16 17 H 0.08 2.38 7.41 -52.49 -0.39 1.99 16 18 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 19 N -0.91 -28.30 13.96 55.43 0.77 -27.53 16 20 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.48 6.87 -51.93 -0.36 0.13 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.84 6.81 -51.92 -0.35 0.49 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.33 4.13 7.55 -39.29 -0.30 3.83 16 30 H 0.34 4.90 8.75 -39.29 -0.34 4.56 16 31 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 32 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.15 1.57 8.06 -52.48 -0.42 1.14 16 34 H 0.04 0.65 5.53 -51.93 -0.29 0.37 16 35 H 0.08 1.83 6.67 -51.93 -0.35 1.49 16 36 H 0.04 0.70 4.61 -34.64 -0.16 0.54 16 37 H 0.05 1.07 4.57 -51.93 -0.24 0.83 16 38 H 0.01 0.21 7.25 -51.93 -0.38 -0.17 16 39 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 309.57 15.07 4.67 4.67 Total: -1.00 -31.06 309.57 -8.68 -39.74 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -5.59 Total: 8.06 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -0.60 Total: -17.81 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.35 Total: -51.23 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.14 Total: -0.32 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.06 -8.68 -39.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043102973.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.680 kcal (2) G-P(sol) polarization free energy of solvation -31.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds