Wall clock time and date at job start Mon Mar 30 2020 06:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47416 * 2 1 4 4 H 1.09003 * 109.47141 * 305.00271 * 3 2 1 5 5 N 1.46896 * 109.47013 * 64.99932 * 3 2 1 6 6 C 1.52996 * 109.47017 * 185.00231 * 3 2 1 7 7 H 1.09000 * 109.47607 * 303.53696 * 6 3 2 8 8 C 1.50694 * 109.47478 * 63.54118 * 6 3 2 9 9 C 1.33384 * 125.20459 * 253.42196 * 8 6 3 10 10 C 1.38424 * 114.92730 * 180.02562 * 9 8 6 11 11 C 1.33393 * 114.91651 * 359.97438 * 10 9 8 12 12 S 1.75882 * 109.59512 * 0.02562 * 11 10 9 13 13 N 1.46907 * 109.47140 * 183.53857 * 6 3 2 14 14 C 1.46906 * 110.99949 * 315.72141 * 13 6 3 15 15 C 1.46905 * 110.99983 * 79.66976 * 13 6 3 16 16 C 1.50697 * 109.47107 * 169.99999 * 15 13 6 17 17 H 1.07998 * 120.00158 * 0.02562 * 16 15 13 18 18 C 1.37881 * 119.99751 * 180.02562 * 16 15 13 19 19 N 1.31514 * 119.99627 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00210 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47173 * 89.99801 * 20 18 16 22 22 H 1.48500 * 109.47324 * 210.00163 * 20 18 16 23 23 H 1.48501 * 109.47308 * 330.00315 * 20 18 16 24 24 H 1.08997 * 109.47198 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46788 * 300.00306 * 1 2 3 26 26 H 1.08998 * 109.46863 * 59.99594 * 1 2 3 27 27 H 1.09009 * 109.46686 * 239.99996 * 2 1 3 28 28 H 1.08998 * 109.46863 * 120.00406 * 2 1 3 29 29 H 1.00902 * 111.00380 * 296.04353 * 5 3 2 30 30 H 1.00899 * 111.00115 * 60.00516 * 5 3 2 31 31 H 1.08006 * 122.54086 * 359.97438 * 9 8 6 32 32 H 1.07995 * 122.54407 * 179.97438 * 10 9 8 33 33 H 1.08004 * 125.20223 * 180.02562 * 11 10 9 34 34 H 1.08993 * 109.47182 * 55.21353 * 14 13 6 35 35 H 1.09001 * 109.47180 * 175.21530 * 14 13 6 36 36 H 1.09002 * 109.46603 * 295.21673 * 14 13 6 37 37 H 1.08997 * 109.47281 * 290.00707 * 15 13 6 38 38 H 1.09003 * 109.46600 * 49.99830 * 15 13 6 39 39 H 0.97001 * 119.99508 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 7 1.6515 2.0992 1.2552 6 6 3.5649 1.4442 -0.1258 7 1 3.9968 0.8522 0.6811 8 6 3.9602 0.8490 -1.4525 9 6 4.4989 -0.3593 -1.6234 10 6 4.7804 -0.6920 -2.9372 11 6 4.4697 0.2459 -3.8334 12 16 3.7823 1.6413 -3.0128 13 7 4.0617 2.8240 -0.0407 14 6 3.2407 3.7303 -0.8548 15 6 4.1198 3.2775 1.3554 16 6 4.8564 4.5902 1.4269 17 1 5.2425 5.0427 0.5254 18 6 5.0376 5.2137 2.6433 19 7 5.6800 6.3595 2.7056 20 14 4.3705 4.4309 4.2026 21 1 5.4017 3.5367 4.7879 22 1 4.0236 5.4932 5.1806 23 1 3.1558 3.6402 3.8791 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 0.6477 2.1684 1.3315 30 1 2.0424 1.6179 2.0512 31 1 4.7010 -1.0271 -0.7990 32 1 5.2183 -1.6392 -3.2156 33 1 4.6177 0.1613 -4.8999 34 1 2.1967 3.6436 -0.5541 35 1 3.5772 4.7565 -0.7074 36 1 3.3391 3.4631 -1.9070 37 1 3.1073 3.4077 1.7376 38 1 4.6425 2.5342 1.9573 39 1 5.8077 6.7979 3.5615 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043102973.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:17 Heat of formation + Delta-G solvation = 26.805136 kcal Electronic energy + Delta-G solvation = -19244.558323 eV Core-core repulsion = 16506.343962 eV Total energy + Delta-G solvation = -2738.214362 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.36932 -38.12907 -36.24684 -34.48144 -31.97484 -31.50394 -29.57566 -28.01339 -26.53666 -24.88791 -23.47577 -22.04362 -21.09123 -20.04201 -18.97484 -17.93395 -16.94845 -16.59182 -16.25322 -16.03864 -15.91560 -15.27975 -15.07106 -14.49281 -14.29010 -14.09653 -13.59687 -13.52208 -13.37881 -13.21140 -12.93360 -12.80905 -12.62316 -12.37950 -12.18146 -12.03567 -11.83174 -11.78282 -11.67771 -11.34184 -11.17182 -10.68308 -9.74044 -9.46756 -9.26489 -8.53370 -8.17973 -6.17754 0.21851 0.85335 1.27588 1.40846 1.43654 1.56309 1.95687 2.44508 3.17163 3.40933 3.49641 3.78851 4.09362 4.16376 4.23959 4.32539 4.44044 4.56521 4.60206 4.72194 4.76080 4.80011 4.88151 4.92822 5.07813 5.10652 5.20969 5.30826 5.33246 5.34466 5.50154 5.61305 5.69381 5.70665 6.09011 6.25509 6.46550 6.61455 6.79830 6.89015 7.43923 8.99331 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.020042 B = 0.006702 C = 0.005643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.738515 B = 4176.727996 C = 4960.665575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.148 4.148 3 C 0.076 3.924 4 H 0.076 0.924 5 N -0.844 5.844 6 C 0.153 3.847 7 H 0.083 0.917 8 C -0.156 4.156 9 C -0.147 4.147 10 C -0.137 4.137 11 C -0.236 4.236 12 S 0.091 5.909 13 N -0.533 5.533 14 C 0.040 3.960 15 C 0.164 3.836 16 C -0.509 4.509 17 H 0.025 0.975 18 C -0.001 4.001 19 N -0.959 5.959 20 Si 0.952 3.048 21 H -0.275 1.275 22 H -0.292 1.292 23 H -0.230 1.230 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.348 0.652 30 H 0.343 0.657 31 H 0.147 0.853 32 H 0.159 0.841 33 H 0.180 0.820 34 H 0.046 0.954 35 H 0.042 0.958 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.008 0.992 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.593 -17.884 -8.547 22.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.188 4.188 3 C -0.038 4.038 4 H 0.094 0.906 5 N -0.376 5.376 6 C 0.041 3.959 7 H 0.101 0.899 8 C -0.274 4.274 9 C -0.178 4.178 10 C -0.167 4.167 11 C -0.371 4.371 12 S 0.354 5.646 13 N -0.255 5.255 14 C -0.109 4.109 15 C 0.037 3.963 16 C -0.548 4.548 17 H 0.043 0.957 18 C -0.196 4.196 19 N -0.601 5.601 20 Si 0.775 3.225 21 H -0.200 1.200 22 H -0.218 1.218 23 H -0.153 1.153 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.163 0.837 30 H 0.156 0.844 31 H 0.165 0.835 32 H 0.177 0.823 33 H 0.198 0.802 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.026 0.974 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.222 -15.709 -9.401 20.968 hybrid contribution -0.257 -1.772 1.619 2.414 sum -10.480 -17.481 -7.782 21.817 Atomic orbital electron populations 1.21740 0.94672 1.02293 1.01817 1.22240 0.97043 0.96844 1.02700 1.22031 0.94646 0.93728 0.93374 0.90563 1.59019 1.16663 1.58052 1.03876 1.20225 0.93007 0.90583 0.92057 0.89884 1.24389 1.07434 0.98220 0.97370 1.20289 1.02363 0.96518 0.98625 1.20325 1.03236 1.01513 0.91669 1.26167 1.08664 0.97736 1.04525 1.84488 1.62486 1.19322 0.98297 1.62085 1.50555 1.00514 1.12367 1.22303 0.96138 0.96707 0.95744 1.20255 0.97683 0.92704 0.85625 1.21451 1.34293 1.05584 0.93432 0.95654 1.25887 0.95528 0.95274 1.02934 1.70095 1.44788 1.18832 1.26427 0.85641 0.80470 0.78323 0.78023 1.20041 1.21815 1.15305 0.91688 0.92452 0.92882 0.91405 0.91694 0.83671 0.84350 0.83539 0.82343 0.80249 0.93572 0.93954 0.92271 0.92480 0.97357 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.68 71.98 0.70 -1.80 16 2 C -0.15 -3.02 5.46 30.59 0.17 -2.85 16 3 C 0.08 1.98 1.57 44.91 0.07 2.05 16 4 H 0.08 2.15 6.49 -2.39 -0.02 2.13 16 5 N -0.84 -22.83 5.59 -168.69 -0.94 -23.77 16 6 C 0.15 4.89 2.08 44.16 0.09 4.98 16 7 H 0.08 2.69 7.70 -2.39 -0.02 2.67 16 8 C -0.16 -4.54 4.40 24.59 0.11 -4.43 16 9 C -0.15 -3.68 9.56 21.22 0.20 -3.48 16 10 C -0.14 -2.99 10.18 21.22 0.22 -2.78 16 11 C -0.24 -5.30 11.23 66.72 0.75 -4.55 16 12 S 0.09 2.51 19.92 -56.49 -1.13 1.39 16 13 N -0.53 -22.20 4.62 -906.03 -4.18 -26.38 16 14 C 0.04 1.60 8.43 127.69 1.08 2.67 16 15 C 0.16 7.78 3.14 85.56 0.27 8.04 16 16 C -0.51 -30.22 8.94 25.60 0.23 -30.00 16 17 H 0.03 1.70 7.41 -2.91 -0.02 1.68 16 18 C 0.00 -0.05 5.47 84.66 0.46 0.41 16 19 N -0.96 -62.05 13.96 21.45 0.30 -61.75 16 20 Si 0.95 44.56 27.47 68.60 1.88 46.44 16 21 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 23 H -0.23 -9.55 6.54 99.48 0.65 -8.90 16 24 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.06 0.90 6.87 -2.39 -0.02 0.89 16 26 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.07 1.44 6.81 -2.38 -0.02 1.42 16 28 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.35 7.75 7.55 -89.69 -0.68 7.08 16 30 H 0.34 8.98 8.75 -89.69 -0.78 8.20 16 31 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 32 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 33 H 0.18 3.03 8.06 -2.91 -0.02 3.01 16 34 H 0.05 1.71 5.53 -2.39 -0.01 1.70 16 35 H 0.04 1.99 6.67 -2.39 -0.02 1.98 16 36 H 0.06 2.12 4.61 -13.38 -0.06 2.06 16 37 H 0.06 2.59 4.57 -2.39 -0.01 2.58 16 38 H 0.01 0.40 7.25 -2.39 -0.02 0.38 16 39 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -69.60 309.57 -0.23 -69.83 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: -0.50 Total: 25.97 kcal Atomic # 6 Polarization: -36.06 SS G_CDS: 4.34 Total: -31.72 kcal Atomic # 7 Polarization: -107.08 SS G_CDS: -4.83 Total: -111.91 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.44 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -1.13 Total: 1.39 kcal Total: -69.60 -0.23 -69.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043102973.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.635 kcal (2) G-P(sol) polarization free energy of solvation -69.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds