Wall clock time and date at job start Mon Mar 30 2020 06:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47207 * 2 1 4 4 H 1.09000 * 109.46860 * 54.02573 * 3 2 1 5 5 N 1.46898 * 109.47329 * 294.02690 * 3 2 1 6 6 C 1.52996 * 109.47267 * 174.02563 * 3 2 1 7 7 H 1.09005 * 109.47469 * 182.39443 * 6 3 2 8 8 C 1.50705 * 109.47230 * 62.39295 * 6 3 2 9 9 C 1.33382 * 125.20266 * 97.46504 * 8 6 3 10 10 C 1.38423 * 114.92063 * 179.97438 * 9 8 6 11 11 C 1.33381 * 114.92128 * 359.97438 * 10 9 8 12 12 S 1.75887 * 109.59574 * 359.75704 * 11 10 9 13 13 N 1.46903 * 109.47328 * 302.39343 * 6 3 2 14 14 C 1.46901 * 110.99781 * 305.79795 * 13 6 3 15 15 C 1.46900 * 111.00191 * 181.84086 * 13 6 3 16 16 C 1.50703 * 109.47258 * 189.99762 * 15 13 6 17 17 H 1.07997 * 119.99581 * 0.02562 * 16 15 13 18 18 C 1.37869 * 120.00116 * 179.97438 * 16 15 13 19 19 N 1.31518 * 119.99967 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00127 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47181 * 90.00181 * 20 18 16 22 22 H 1.48501 * 109.47299 * 210.00331 * 20 18 16 23 23 H 1.48497 * 109.46853 * 330.00048 * 20 18 16 24 24 H 1.09000 * 109.47513 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47551 * 300.00284 * 1 2 3 26 26 H 1.08997 * 109.47185 * 59.99971 * 1 2 3 27 27 H 1.09005 * 109.47100 * 119.99755 * 2 1 3 28 28 H 1.08998 * 109.47658 * 240.00199 * 2 1 3 29 29 H 1.00900 * 111.00346 * 176.04241 * 5 3 2 30 30 H 1.00904 * 110.99593 * 300.00086 * 5 3 2 31 31 H 1.08005 * 122.53978 * 0.02562 * 9 8 6 32 32 H 1.08004 * 122.53832 * 180.02562 * 10 9 8 33 33 H 1.08003 * 125.20626 * 179.97438 * 11 10 9 34 34 H 1.08999 * 109.47583 * 66.37262 * 14 13 6 35 35 H 1.09003 * 109.46654 * 186.37209 * 14 13 6 36 36 H 1.09002 * 109.47037 * 306.36632 * 14 13 6 37 37 H 1.08999 * 109.47376 * 309.99881 * 15 13 6 38 38 H 1.08999 * 109.46821 * 70.00266 * 15 13 6 39 39 H 0.97000 * 119.99727 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5919 1.9862 0.8317 5 7 1.6715 2.0922 -1.2650 6 6 3.5625 1.4451 0.1501 7 1 3.9217 2.4734 0.1929 8 6 4.1849 0.7443 -1.0300 9 6 4.6820 1.3499 -2.1094 10 6 5.2043 0.4982 -3.0675 11 6 5.1318 -0.7990 -2.7658 12 16 4.3748 -0.9969 -1.1905 13 7 3.9339 0.7450 1.3871 14 6 3.2350 1.3169 2.5457 15 6 5.3890 0.7656 1.5871 16 6 5.7537 -0.1605 2.7187 17 1 4.9817 -0.7097 3.2371 18 6 7.0729 -0.3074 3.0915 19 7 8.0130 0.3611 2.4599 20 14 7.5250 -1.4559 4.4937 21 1 7.7843 -2.8156 3.9559 22 1 8.7452 -0.9512 5.1731 23 1 6.4048 -1.5137 5.4668 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.9404 3.0647 -1.2638 30 1 2.0751 1.6063 -2.0519 31 1 4.6781 2.4236 -2.2267 32 1 5.6384 0.8569 -3.9891 33 1 5.4870 -1.6046 -3.3913 34 1 2.1657 1.1251 2.4562 35 1 3.6112 0.8576 3.4599 36 1 3.4096 2.3922 2.5810 37 1 5.8860 0.4371 0.6743 38 1 5.7080 1.7791 1.8300 39 1 8.9411 0.2580 2.7224 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043102977.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:20 Heat of formation + Delta-G solvation = 15.136527 kcal Electronic energy + Delta-G solvation = -19313.637910 eV Core-core repulsion = 16574.917559 eV Total energy + Delta-G solvation = -2738.720351 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.29779 -37.94903 -36.42861 -34.46504 -32.24731 -31.00863 -29.54373 -27.73444 -26.48604 -24.64983 -23.88592 -22.54341 -20.91783 -19.90687 -18.60596 -17.89328 -16.96693 -16.76254 -16.50514 -16.03767 -15.87395 -15.12679 -14.88765 -14.39726 -14.09236 -13.83677 -13.78890 -13.53959 -13.39256 -13.14367 -12.83765 -12.77781 -12.66594 -12.52374 -12.36576 -12.11509 -11.87594 -11.61192 -11.42320 -11.39553 -11.31971 -10.60807 -9.73024 -9.39014 -9.11047 -9.06663 -8.19021 -6.27829 0.20188 0.89466 1.35106 1.39828 1.40971 1.51475 1.91536 2.39722 3.13706 3.24977 3.69285 3.78937 4.05458 4.17924 4.28780 4.40339 4.47849 4.59230 4.68539 4.71423 4.74646 4.81065 4.93624 5.08693 5.14681 5.18904 5.25264 5.31380 5.36114 5.44001 5.47797 5.62201 5.65169 5.68980 6.05496 6.22291 6.29680 6.59532 6.61923 6.88063 7.41061 8.91964 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.018131 B = 0.007283 C = 0.006071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.934045 B = 3843.881838 C = 4610.934549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 C 0.113 3.887 4 H 0.086 0.914 5 N -0.827 5.827 6 C 0.116 3.884 7 H 0.032 0.968 8 C -0.163 4.163 9 C -0.159 4.159 10 C -0.139 4.139 11 C -0.242 4.242 12 S 0.126 5.874 13 N -0.528 5.528 14 C 0.035 3.965 15 C 0.212 3.788 16 C -0.515 4.515 17 H 0.063 0.937 18 C 0.003 3.997 19 N -0.935 5.935 20 Si 0.963 3.037 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.263 1.263 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.343 0.657 30 H 0.341 0.659 31 H 0.143 0.857 32 H 0.159 0.841 33 H 0.180 0.820 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.012 0.988 37 H 0.014 0.986 38 H -0.052 1.052 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.304 0.838 -9.207 14.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.151 4.151 3 C 0.000 4.000 4 H 0.104 0.896 5 N -0.356 5.356 6 C 0.003 3.997 7 H 0.049 0.951 8 C -0.282 4.282 9 C -0.191 4.191 10 C -0.169 4.169 11 C -0.378 4.378 12 S 0.391 5.609 13 N -0.252 5.252 14 C -0.113 4.113 15 C 0.085 3.915 16 C -0.553 4.553 17 H 0.082 0.918 18 C -0.195 4.195 19 N -0.575 5.575 20 Si 0.788 3.212 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.187 1.187 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.156 0.844 30 H 0.155 0.845 31 H 0.161 0.839 32 H 0.177 0.823 33 H 0.197 0.803 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.030 0.970 37 H 0.032 0.968 38 H -0.034 1.034 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.404 -1.064 -8.157 14.883 hybrid contribution 2.742 1.878 -0.118 3.326 sum -9.661 0.814 -8.275 12.747 Atomic orbital electron populations 1.21602 0.94388 1.01087 1.02020 1.21532 0.96644 0.94713 1.02191 1.21423 0.88437 0.96784 0.93344 0.89603 1.59095 1.66027 1.06916 1.03585 1.21149 0.97813 0.93232 0.87498 0.95070 1.24431 1.07033 0.96943 0.99753 1.20269 1.02779 1.01500 0.94531 1.20269 1.02929 0.92136 1.01601 1.26092 1.09228 1.01571 1.00874 1.84685 1.56909 1.05189 1.14093 1.62149 1.08557 1.52945 1.01550 1.22304 0.98999 0.96060 0.93935 1.19375 0.83240 0.92750 0.96088 1.21421 0.92475 1.25065 1.16361 0.91839 1.25841 0.96436 0.97673 0.99520 1.70100 1.00813 1.43576 1.43048 0.85480 0.77764 0.78835 0.79153 1.20022 1.21025 1.18721 0.92950 0.93051 0.91973 0.91927 0.92455 0.84447 0.84517 0.83913 0.82346 0.80258 0.89842 0.92159 0.96953 0.96805 1.03389 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 9.81 71.98 0.71 -2.41 16 2 C -0.11 -3.15 4.62 30.59 0.14 -3.01 16 3 C 0.11 3.12 2.10 44.91 0.09 3.21 16 4 H 0.09 2.33 6.62 -2.39 -0.02 2.32 16 5 N -0.83 -19.19 8.67 -168.68 -1.46 -20.65 16 6 C 0.12 3.99 1.91 44.17 0.08 4.08 16 7 H 0.03 1.15 8.13 -2.38 -0.02 1.13 16 8 C -0.16 -5.56 2.61 24.59 0.06 -5.49 16 9 C -0.16 -4.81 9.31 21.21 0.20 -4.61 16 10 C -0.14 -3.82 10.18 21.21 0.22 -3.60 16 11 C -0.24 -6.97 11.23 66.72 0.75 -6.22 16 12 S 0.13 4.37 20.42 -56.49 -1.15 3.22 16 13 N -0.53 -21.84 3.42 -906.01 -3.10 -24.94 16 14 C 0.04 1.30 8.55 127.69 1.09 2.39 16 15 C 0.21 11.17 4.50 85.56 0.38 11.56 16 16 C -0.51 -28.91 8.36 25.60 0.21 -28.70 16 17 H 0.06 3.49 7.18 -2.91 -0.02 3.47 16 18 C 0.00 0.18 5.46 84.65 0.46 0.64 16 19 N -0.93 -56.75 13.29 21.44 0.28 -56.46 16 20 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 21 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 23 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 24 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.06 1.42 7.78 -2.39 -0.02 1.40 16 27 H 0.06 2.02 6.89 -2.38 -0.02 2.00 16 28 H 0.06 1.68 6.11 -2.39 -0.01 1.66 16 29 H 0.34 7.05 9.07 -89.69 -0.81 6.24 16 30 H 0.34 8.11 7.32 -89.69 -0.66 7.45 16 31 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 32 H 0.16 3.38 8.06 -2.91 -0.02 3.35 16 33 H 0.18 4.13 8.06 -2.91 -0.02 4.11 16 34 H 0.08 2.56 6.21 -2.39 -0.01 2.54 16 35 H 0.06 2.47 6.64 -2.39 -0.02 2.45 16 36 H 0.01 0.44 8.12 -2.39 -0.02 0.42 16 37 H 0.01 0.79 6.37 -2.39 -0.02 0.78 16 38 H -0.05 -3.04 8.12 -2.39 -0.02 -3.06 16 39 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -63.34 318.62 0.58 -62.75 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: -0.42 Total: 21.68 kcal Atomic # 6 Polarization: -36.57 SS G_CDS: 4.41 Total: -32.16 kcal Atomic # 7 Polarization: -97.77 SS G_CDS: -4.28 Total: -102.05 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: 4.37 SS G_CDS: -1.15 Total: 3.22 kcal Total: -63.34 0.58 -62.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043102977.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.888 kcal (2) G-P(sol) polarization free energy of solvation -63.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds