Wall clock time and date at job start Mon Mar 30 2020 06:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53011 * 109.46989 * 2 1 4 4 H 1.09005 * 109.46484 * 299.71565 * 3 2 1 5 5 N 1.46893 * 109.47034 * 59.71325 * 3 2 1 6 6 C 1.52993 * 109.46946 * 179.71742 * 3 2 1 7 7 H 1.08992 * 109.47154 * 304.49936 * 6 3 2 8 8 C 1.50709 * 109.46652 * 184.50555 * 6 3 2 9 9 C 1.33383 * 125.20259 * 99.99888 * 8 6 3 10 10 C 1.38421 * 114.92100 * 179.97438 * 9 8 6 11 11 C 1.33385 * 114.92393 * 0.02562 * 10 9 8 12 12 S 1.75884 * 109.59079 * 359.75471 * 11 10 9 13 13 N 1.46902 * 109.47264 * 64.51108 * 6 3 2 14 14 C 1.46907 * 110.99505 * 270.32848 * 13 6 3 15 15 C 1.46897 * 111.00316 * 34.28562 * 13 6 3 16 16 C 1.50700 * 109.47026 * 163.90117 * 15 13 6 17 17 H 1.07997 * 120.00345 * 359.97438 * 16 15 13 18 18 C 1.37875 * 119.99675 * 180.02562 * 16 15 13 19 19 N 1.31513 * 120.00268 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99784 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47200 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46983 * 119.99795 * 20 18 16 23 23 H 1.48498 * 109.46606 * 239.99756 * 20 18 16 24 24 H 1.09005 * 109.47350 * 299.99492 * 1 2 3 25 25 H 1.09001 * 109.47557 * 60.00237 * 1 2 3 26 26 H 1.09006 * 109.46576 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47350 * 240.00508 * 2 1 3 28 28 H 1.09001 * 109.47557 * 119.99763 * 2 1 3 29 29 H 1.00902 * 111.00419 * 180.02562 * 5 3 2 30 30 H 1.00907 * 111.00279 * 303.95680 * 5 3 2 31 31 H 1.08002 * 122.54169 * 0.02562 * 9 8 6 32 32 H 1.08007 * 122.54385 * 179.97438 * 10 9 8 33 33 H 1.08002 * 125.20907 * 179.97438 * 11 10 9 34 34 H 1.09004 * 109.46674 * 51.06889 * 14 13 6 35 35 H 1.09000 * 109.46816 * 171.07241 * 14 13 6 36 36 H 1.08993 * 109.47086 * 291.07039 * 14 13 6 37 37 H 1.08997 * 109.46568 * 283.89849 * 15 13 6 38 38 H 1.08998 * 109.47255 * 43.89760 * 15 13 6 39 39 H 0.96998 * 120.00212 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6807 1.9549 -0.8926 5 7 1.5446 2.1370 1.1959 6 6 3.5699 1.4426 0.0071 7 1 3.9292 0.8620 0.8566 8 6 4.0716 2.8593 0.1187 9 6 4.5011 3.4367 1.2418 10 6 4.9157 4.7498 1.1009 11 6 4.8225 5.2390 -0.1365 12 16 4.1867 4.0021 -1.2133 13 7 4.0654 0.8445 -1.2398 14 6 4.2328 -0.6079 -1.0967 15 6 3.1779 1.1639 -2.3659 16 6 3.8938 0.8894 -3.6633 17 1 4.9070 0.5155 -3.6524 18 6 3.2558 1.1165 -4.8642 19 7 2.0222 1.5722 -4.8776 20 14 4.1435 0.7770 -6.4724 21 1 5.5112 0.2743 -6.1862 22 1 3.3923 -0.2437 -7.2464 23 1 4.2327 2.0310 -7.2627 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8900 29 1 1.8676 3.0927 1.2190 30 1 0.5378 2.0947 1.2477 31 1 4.5243 2.9187 2.1892 32 1 5.2859 5.3344 1.9302 33 1 5.0987 6.2402 -0.4327 34 1 3.3165 -1.0415 -0.6959 35 1 4.4464 -1.0467 -2.0714 36 1 5.0595 -0.8131 -0.4168 37 1 2.2813 0.5467 -2.3081 38 1 2.8980 2.2164 -2.3209 39 1 1.5734 1.7324 -5.7224 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043102980.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:24 Heat of formation + Delta-G solvation = 44.637378 kcal Electronic energy + Delta-G solvation = -19410.629340 eV Core-core repulsion = 16673.188242 eV Total energy + Delta-G solvation = -2737.441098 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.03574 -36.85021 -34.52538 -32.51309 -31.22882 -29.50390 -27.46994 -26.78277 -24.69255 -23.78031 -22.39440 -20.63412 -19.28745 -18.70730 -16.79912 -16.33025 -15.85310 -15.23359 -14.96256 -14.59421 -13.92110 -13.74870 -13.29291 -13.07193 -12.72467 -12.35059 -12.28081 -12.14727 -12.07545 -11.69003 -11.35580 -11.23686 -10.98930 -10.87499 -10.75252 -10.53888 -10.43692 -10.27238 -9.84064 -9.79316 -9.23763 -8.47837 -8.36780 -8.06664 -7.84954 -7.21003 -6.04793 -4.05311 1.55492 2.28596 2.71738 3.21675 3.29385 3.37433 3.42519 4.40889 4.71852 5.04801 5.14813 5.28353 5.31791 5.45695 5.47997 5.62536 5.78605 5.83524 5.95908 6.01349 6.10867 6.16375 6.17922 6.30196 6.36532 6.51242 6.59641 6.60168 6.72618 6.81113 6.95449 7.16943 7.29227 7.43407 7.72943 7.79272 8.04386 8.13575 8.50093 9.02298 9.58716 11.05315 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.015481 B = 0.008238 C = 0.006293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.242147 B = 3397.898795 C = 4448.383868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C 0.066 3.934 4 H 0.055 0.945 5 N -0.844 5.844 6 C 0.156 3.844 7 H 0.086 0.914 8 C -0.143 4.143 9 C -0.155 4.155 10 C -0.139 4.139 11 C -0.260 4.260 12 S 0.173 5.827 13 N -0.532 5.532 14 C 0.020 3.980 15 C 0.186 3.814 16 C -0.504 4.504 17 H 0.063 0.937 18 C 0.057 3.943 19 N -0.897 5.897 20 Si 0.893 3.107 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.284 1.284 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.339 0.661 30 H 0.334 0.666 31 H 0.131 0.869 32 H 0.126 0.874 33 H 0.151 0.849 34 H 0.031 0.969 35 H 0.076 0.924 36 H 0.047 0.953 37 H 0.004 0.996 38 H 0.033 0.967 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.056 2.144 11.020 11.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.047 4.047 4 H 0.073 0.927 5 N -0.376 5.376 6 C 0.044 3.956 7 H 0.104 0.896 8 C -0.262 4.262 9 C -0.186 4.186 10 C -0.170 4.170 11 C -0.396 4.396 12 S 0.439 5.561 13 N -0.256 5.256 14 C -0.128 4.128 15 C 0.061 3.939 16 C -0.543 4.543 17 H 0.082 0.918 18 C -0.144 4.144 19 N -0.537 5.537 20 Si 0.721 3.279 21 H -0.196 1.196 22 H -0.212 1.212 23 H -0.210 1.210 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.081 0.919 29 H 0.152 0.848 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.169 0.831 34 H 0.049 0.951 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.022 0.978 38 H 0.050 0.950 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.481 1.807 9.624 9.804 hybrid contribution -0.479 0.357 0.055 0.600 sum 0.003 2.164 9.679 9.918 Atomic orbital electron populations 1.21755 0.96260 1.01396 1.01425 1.21940 0.95813 0.96046 1.02612 1.22124 0.95317 0.95203 0.92065 0.92711 1.58854 1.15323 1.21103 1.42287 1.20143 0.91184 0.89465 0.94806 0.89593 1.24634 1.05695 0.99803 0.96046 1.19919 1.04677 0.95257 0.98704 1.19965 1.04318 0.95759 0.96998 1.25952 1.10757 1.04355 0.98529 1.85346 1.60345 1.00790 1.09666 1.62382 1.50170 1.10552 1.02467 1.22573 0.99166 0.88797 1.02288 1.19955 0.90648 0.96020 0.87251 1.21193 1.00204 1.43088 0.89779 0.91833 1.24945 0.94896 0.95429 0.99143 1.69952 1.11619 1.45826 1.26279 0.86507 0.79913 0.77867 0.83571 1.19643 1.21172 1.21045 0.92878 0.92660 0.92975 0.89637 0.91937 0.84779 0.85273 0.85084 0.85653 0.83093 0.95101 0.90511 0.93449 0.97834 0.94979 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.58 37.16 0.36 -1.80 16 2 C -0.13 -2.04 4.02 -26.73 -0.11 -2.15 16 3 C 0.07 1.12 2.01 -67.71 -0.14 0.99 16 4 H 0.06 1.12 5.98 -51.93 -0.31 0.81 16 5 N -0.84 -12.20 9.15 -4.67 -0.04 -12.24 16 6 C 0.16 2.80 2.11 -68.86 -0.15 2.66 16 7 H 0.09 1.49 7.77 -51.93 -0.40 1.09 16 8 C -0.14 -2.51 4.39 -36.00 -0.16 -2.67 16 9 C -0.15 -2.39 9.47 -41.21 -0.39 -2.78 16 10 C -0.14 -2.01 10.18 -41.21 -0.42 -2.43 16 11 C -0.26 -3.98 11.23 29.04 0.33 -3.65 16 12 S 0.17 3.23 20.75 -107.50 -2.23 1.00 16 13 N -0.53 -11.04 4.41 -237.73 -1.05 -12.09 16 14 C 0.02 0.37 9.00 60.07 0.54 0.91 16 15 C 0.19 4.52 2.84 -4.98 -0.01 4.51 16 16 C -0.50 -13.65 8.42 -34.44 -0.29 -13.94 16 17 H 0.06 1.74 7.62 -52.49 -0.40 1.34 16 18 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -25.70 13.29 55.43 0.74 -24.96 16 20 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H 0.05 0.67 6.57 -51.93 -0.34 0.33 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.09 1.56 3.96 -51.93 -0.21 1.36 16 28 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 29 H 0.34 4.93 7.42 -39.29 -0.29 4.63 16 30 H 0.33 4.36 7.02 -39.29 -0.28 4.08 16 31 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 32 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 33 H 0.15 1.95 8.06 -52.49 -0.42 1.53 16 34 H 0.03 0.53 4.53 -51.93 -0.24 0.30 16 35 H 0.08 1.54 7.09 -51.93 -0.37 1.17 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.00 0.10 5.60 -51.93 -0.29 -0.19 16 38 H 0.03 0.83 4.95 -51.93 -0.26 0.57 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 310.68 15.07 4.68 4.68 Total: -1.00 -28.16 310.68 -8.93 -37.09 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -5.47 Total: 9.07 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -0.53 Total: -18.89 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: -0.35 Total: -49.29 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -2.23 Total: 1.00 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.16 -8.93 -37.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043102980.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.728 kcal (2) G-P(sol) polarization free energy of solvation -28.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds