Wall clock time and date at job start Mon Mar 30 2020 06:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53011 * 109.46989 * 2 1 4 4 H 1.09005 * 109.46484 * 299.71565 * 3 2 1 5 5 N 1.46893 * 109.47034 * 59.71325 * 3 2 1 6 6 C 1.52993 * 109.46946 * 179.71742 * 3 2 1 7 7 H 1.08992 * 109.47154 * 304.49936 * 6 3 2 8 8 C 1.50709 * 109.46652 * 184.50555 * 6 3 2 9 9 C 1.33383 * 125.20259 * 99.99888 * 8 6 3 10 10 C 1.38421 * 114.92100 * 179.97438 * 9 8 6 11 11 C 1.33385 * 114.92393 * 0.02562 * 10 9 8 12 12 S 1.75884 * 109.59079 * 359.75471 * 11 10 9 13 13 N 1.46902 * 109.47264 * 64.51108 * 6 3 2 14 14 C 1.46907 * 110.99505 * 270.32848 * 13 6 3 15 15 C 1.46897 * 111.00316 * 34.28562 * 13 6 3 16 16 C 1.50700 * 109.47026 * 163.90117 * 15 13 6 17 17 H 1.07997 * 120.00345 * 359.97438 * 16 15 13 18 18 C 1.37875 * 119.99675 * 180.02562 * 16 15 13 19 19 N 1.31513 * 120.00268 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99784 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47200 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46983 * 119.99795 * 20 18 16 23 23 H 1.48498 * 109.46606 * 239.99756 * 20 18 16 24 24 H 1.09005 * 109.47350 * 299.99492 * 1 2 3 25 25 H 1.09001 * 109.47557 * 60.00237 * 1 2 3 26 26 H 1.09006 * 109.46576 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47350 * 240.00508 * 2 1 3 28 28 H 1.09001 * 109.47557 * 119.99763 * 2 1 3 29 29 H 1.00902 * 111.00419 * 180.02562 * 5 3 2 30 30 H 1.00907 * 111.00279 * 303.95680 * 5 3 2 31 31 H 1.08002 * 122.54169 * 0.02562 * 9 8 6 32 32 H 1.08007 * 122.54385 * 179.97438 * 10 9 8 33 33 H 1.08002 * 125.20907 * 179.97438 * 11 10 9 34 34 H 1.09004 * 109.46674 * 51.06889 * 14 13 6 35 35 H 1.09000 * 109.46816 * 171.07241 * 14 13 6 36 36 H 1.08993 * 109.47086 * 291.07039 * 14 13 6 37 37 H 1.08997 * 109.46568 * 283.89849 * 15 13 6 38 38 H 1.08998 * 109.47255 * 43.89760 * 15 13 6 39 39 H 0.96998 * 120.00212 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6807 1.9549 -0.8926 5 7 1.5446 2.1370 1.1959 6 6 3.5699 1.4426 0.0071 7 1 3.9292 0.8620 0.8566 8 6 4.0716 2.8593 0.1187 9 6 4.5011 3.4367 1.2418 10 6 4.9157 4.7498 1.1009 11 6 4.8225 5.2390 -0.1365 12 16 4.1867 4.0021 -1.2133 13 7 4.0654 0.8445 -1.2398 14 6 4.2328 -0.6079 -1.0967 15 6 3.1779 1.1639 -2.3659 16 6 3.8938 0.8894 -3.6633 17 1 4.9070 0.5155 -3.6524 18 6 3.2558 1.1165 -4.8642 19 7 2.0222 1.5722 -4.8776 20 14 4.1435 0.7770 -6.4724 21 1 5.5112 0.2743 -6.1862 22 1 3.3923 -0.2437 -7.2464 23 1 4.2327 2.0310 -7.2627 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8900 29 1 1.8676 3.0927 1.2190 30 1 0.5378 2.0947 1.2477 31 1 4.5243 2.9187 2.1892 32 1 5.2859 5.3344 1.9302 33 1 5.0987 6.2402 -0.4327 34 1 3.3165 -1.0415 -0.6959 35 1 4.4464 -1.0467 -2.0714 36 1 5.0595 -0.8131 -0.4168 37 1 2.2813 0.5467 -2.3081 38 1 2.8980 2.2164 -2.3209 39 1 1.5734 1.7324 -5.7224 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043102980.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:23 Heat of formation + Delta-G solvation = 25.686807 kcal Electronic energy + Delta-G solvation = -19411.451098 eV Core-core repulsion = 16673.188242 eV Total energy + Delta-G solvation = -2738.262856 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.48197 -38.12964 -36.03421 -34.50922 -32.51979 -30.82857 -29.36219 -28.12863 -26.18377 -25.37018 -23.88375 -22.09188 -20.74873 -19.95790 -18.67155 -17.75265 -17.23311 -16.80129 -16.46565 -16.29567 -15.38235 -15.30528 -14.72555 -14.37045 -14.09764 -14.07860 -13.60466 -13.51324 -13.42643 -13.11602 -12.92681 -12.83192 -12.60512 -12.54774 -12.30696 -12.23661 -11.86217 -11.66138 -11.58326 -11.28727 -11.10269 -10.54083 -9.67604 -9.37793 -9.24222 -8.83823 -8.15629 -6.23219 0.29358 0.96470 1.37882 1.40068 1.44837 1.52108 2.01878 2.41276 3.16470 3.30629 3.69577 3.76044 3.97084 4.16503 4.31080 4.37424 4.40839 4.53412 4.67180 4.74258 4.80870 4.84123 4.88882 4.94227 5.04108 5.15512 5.25082 5.27447 5.32396 5.39627 5.42692 5.56089 5.69421 5.79297 6.11594 6.16354 6.39210 6.57145 6.68437 6.92024 7.44768 8.93559 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.015481 B = 0.008238 C = 0.006293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.242147 B = 3397.898795 C = 4448.383868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.124 4.124 3 C 0.078 3.922 4 H 0.013 0.987 5 N -0.829 5.829 6 C 0.158 3.842 7 H 0.100 0.900 8 C -0.156 4.156 9 C -0.138 4.138 10 C -0.133 4.133 11 C -0.243 4.243 12 S 0.074 5.926 13 N -0.543 5.543 14 C 0.020 3.980 15 C 0.209 3.791 16 C -0.516 4.516 17 H 0.054 0.946 18 C 0.008 3.992 19 N -0.928 5.928 20 Si 0.955 3.045 21 H -0.267 1.267 22 H -0.279 1.279 23 H -0.281 1.281 24 H 0.074 0.926 25 H 0.032 0.968 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.341 0.659 30 H 0.344 0.656 31 H 0.155 0.845 32 H 0.164 0.836 33 H 0.175 0.825 34 H 0.044 0.956 35 H 0.054 0.946 36 H 0.071 0.929 37 H -0.019 1.019 38 H 0.017 0.983 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.891 2.396 13.242 13.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C -0.035 4.035 4 H 0.031 0.969 5 N -0.361 5.361 6 C 0.047 3.953 7 H 0.117 0.883 8 C -0.275 4.275 9 C -0.169 4.169 10 C -0.163 4.163 11 C -0.379 4.379 12 S 0.338 5.662 13 N -0.266 5.266 14 C -0.127 4.127 15 C 0.083 3.917 16 C -0.555 4.555 17 H 0.072 0.928 18 C -0.190 4.190 19 N -0.569 5.569 20 Si 0.781 3.219 21 H -0.192 1.192 22 H -0.205 1.205 23 H -0.207 1.207 24 H 0.093 0.907 25 H 0.051 0.949 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.154 0.846 30 H 0.158 0.842 31 H 0.172 0.828 32 H 0.181 0.819 33 H 0.193 0.807 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.090 0.910 37 H -0.002 1.002 38 H 0.035 0.965 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.318 2.050 11.870 12.118 hybrid contribution -0.706 0.331 -0.502 0.928 sum 0.612 2.381 11.367 11.630 Atomic orbital electron populations 1.21716 0.94917 1.02349 1.01337 1.21867 0.97052 0.95236 1.01946 1.21849 0.94878 0.95541 0.91276 0.96937 1.58829 1.16061 1.21003 1.40205 1.20170 0.91696 0.89901 0.93536 0.88262 1.24555 1.07777 0.99348 0.95789 1.20254 1.02379 0.95655 0.98631 1.20354 1.02940 0.95453 0.97567 1.26113 1.09912 1.04179 0.97651 1.85690 1.62972 1.04333 1.13221 1.62282 1.49537 1.11855 1.02954 1.22590 1.00758 0.87664 1.01724 1.19513 0.89858 0.94568 0.87730 1.21494 0.99891 1.42630 0.91460 0.92796 1.25708 0.95584 0.95339 1.02369 1.70066 1.12930 1.46898 1.27024 0.85548 0.78946 0.77784 0.79665 1.19152 1.20467 1.20736 0.90735 0.94886 0.91552 0.92302 0.90268 0.84608 0.84202 0.82769 0.81891 0.80711 0.93752 0.92745 0.90996 1.00181 0.96549 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.07 9.58 71.98 0.69 -3.38 16 2 C -0.12 -3.93 4.02 30.60 0.12 -3.81 16 3 C 0.08 2.66 2.01 44.92 0.09 2.75 16 4 H 0.01 0.54 5.98 -2.38 -0.01 0.53 16 5 N -0.83 -22.67 9.15 -168.68 -1.54 -24.22 16 6 C 0.16 5.60 2.11 44.17 0.09 5.70 16 7 H 0.10 3.24 7.77 -2.39 -0.02 3.22 16 8 C -0.16 -5.37 4.39 24.59 0.11 -5.26 16 9 C -0.14 -3.86 9.47 21.21 0.20 -3.66 16 10 C -0.13 -3.35 10.18 21.21 0.22 -3.14 16 11 C -0.24 -6.95 11.23 66.72 0.75 -6.20 16 12 S 0.07 2.81 20.75 -56.49 -1.17 1.63 16 13 N -0.54 -22.92 4.41 -906.04 -3.99 -26.91 16 14 C 0.02 0.76 9.00 127.69 1.15 1.91 16 15 C 0.21 10.63 2.84 85.56 0.24 10.87 16 16 C -0.52 -29.00 8.42 25.60 0.22 -28.79 16 17 H 0.05 3.06 7.62 -2.91 -0.02 3.04 16 18 C 0.01 0.46 5.46 84.65 0.46 0.92 16 19 N -0.93 -55.08 13.29 21.45 0.28 -54.79 16 20 Si 0.95 44.75 29.54 68.60 2.03 46.78 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 23 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 24 H 0.07 1.73 6.57 -2.38 -0.02 1.72 16 25 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 27 H 0.06 2.20 3.96 -2.38 -0.01 2.19 16 28 H 0.08 2.25 8.12 -2.39 -0.02 2.23 16 29 H 0.34 9.37 7.42 -89.69 -0.67 8.70 16 30 H 0.34 8.38 7.02 -89.69 -0.63 7.75 16 31 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 32 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 33 H 0.18 4.07 8.06 -2.91 -0.02 4.04 16 34 H 0.04 1.53 4.53 -2.38 -0.01 1.52 16 35 H 0.05 2.24 7.09 -2.39 -0.02 2.22 16 36 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 37 H -0.02 -1.06 5.60 -2.39 -0.01 -1.07 16 38 H 0.02 0.91 4.95 -2.39 -0.01 0.90 16 39 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -62.67 310.68 -0.29 -62.96 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: -0.23 Total: 26.64 kcal Atomic # 6 Polarization: -36.43 SS G_CDS: 4.34 Total: -32.09 kcal Atomic # 7 Polarization: -100.67 SS G_CDS: -5.25 Total: -105.92 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -1.17 Total: 1.63 kcal Total: -62.67 -0.29 -62.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043102980.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.643 kcal (2) G-P(sol) polarization free energy of solvation -62.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds