Wall clock time and date at job start Mon Mar 30 2020 06:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47732 * 2 1 4 4 C 1.46900 * 111.00161 * 71.68643 * 3 2 1 5 5 C 1.50699 * 109.46927 * 200.63306 * 4 3 2 6 6 H 1.08001 * 120.00413 * 5.06595 * 5 4 3 7 7 C 1.37884 * 119.99749 * 185.07076 * 5 4 3 8 8 N 1.31512 * 120.00104 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99938 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46846 * 60.00202 * 9 7 5 11 11 H 1.48496 * 109.47117 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47161 * 300.00298 * 9 7 5 13 13 C 1.46896 * 111.00436 * 195.64954 * 3 2 1 14 14 H 1.08998 * 109.47342 * 185.79517 * 13 3 2 15 15 C 1.50698 * 109.46702 * 305.79642 * 13 3 2 16 16 C 1.33392 * 125.20251 * 235.15511 * 15 13 3 17 17 C 1.38421 * 114.92290 * 179.73521 * 16 15 13 18 18 C 1.33390 * 114.92257 * 359.97438 * 17 16 15 19 19 S 1.75884 * 125.20641 * 54.84803 * 15 13 3 20 20 C 1.53003 * 109.47364 * 65.79185 * 13 3 2 21 21 H 1.08997 * 109.47212 * 298.90772 * 20 13 3 22 22 C 1.53002 * 109.46842 * 58.90378 * 20 13 3 23 23 N 1.46896 * 109.46985 * 178.90099 * 20 13 3 24 24 H 1.08997 * 109.46669 * 63.70996 * 1 2 3 25 25 H 1.08995 * 109.47203 * 183.71432 * 1 2 3 26 26 H 1.08995 * 109.47018 * 303.71464 * 1 2 3 27 27 H 1.08994 * 109.47320 * 239.99308 * 2 1 3 28 28 H 1.09007 * 109.47010 * 119.99549 * 2 1 3 29 29 H 1.08992 * 109.47136 * 320.63290 * 4 3 2 30 30 H 1.08999 * 109.46891 * 80.63540 * 4 3 2 31 31 H 0.96993 * 120.00346 * 180.02562 * 8 7 5 32 32 H 1.07996 * 122.53750 * 359.74934 * 16 15 13 33 33 H 1.08003 * 122.53912 * 180.02562 * 17 16 15 34 34 H 1.08002 * 125.20673 * 179.97438 * 18 17 16 35 35 H 1.08994 * 109.47130 * 64.45981 * 22 20 13 36 36 H 1.09003 * 109.46934 * 184.46447 * 22 20 13 37 37 H 1.09002 * 109.47008 * 304.46231 * 22 20 13 38 38 H 1.00892 * 111.00337 * 300.00384 * 23 20 13 39 39 H 1.00907 * 111.00217 * 63.95787 * 23 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.7891 2.0249 1.3020 5 6 1.8172 3.5227 1.1374 6 1 1.9073 3.9561 0.1523 7 6 1.7280 4.3396 2.2445 8 7 1.6189 3.8118 3.4442 9 14 1.7635 6.1961 2.0407 10 1 0.6250 6.6223 1.1877 11 1 1.6523 6.8426 3.3729 12 1 3.0406 6.5993 1.3992 13 6 3.4403 1.4410 -0.3699 14 1 3.8037 2.4630 -0.2627 15 6 4.2308 0.5294 0.5330 16 6 5.2803 0.8977 1.2694 17 6 5.8447 -0.1137 2.0274 18 6 5.2534 -1.3033 1.9069 19 16 3.9062 -1.1810 0.7828 20 6 3.6073 0.9901 -1.8225 21 1 3.2621 -0.0385 -1.9256 22 6 2.7829 1.8989 -2.7365 23 7 5.0245 1.0713 -2.2005 24 1 -0.3632 0.4552 -0.9214 25 1 -0.3633 -1.0255 0.0666 26 1 -0.3633 0.5704 0.8548 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 0.8170 1.7202 1.6894 30 1 2.5698 1.7214 1.9994 31 1 1.5558 4.3865 4.2230 32 1 5.6605 1.9085 1.2742 33 1 6.6987 0.0482 2.6684 34 1 5.5562 -2.2040 2.4202 35 1 3.1790 2.9134 -2.6934 36 1 2.8381 1.5304 -3.7608 37 1 1.7440 1.9001 -2.4063 38 1 5.3685 2.0158 -2.1133 39 1 5.5818 0.4317 -1.6541 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043106278.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:12 Heat of formation + Delta-G solvation = 36.802945 kcal Electronic energy + Delta-G solvation = -19523.178927 eV Core-core repulsion = 16785.398103 eV Total energy + Delta-G solvation = -2737.780824 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.90832 -36.72392 -34.79265 -32.61719 -30.59333 -29.09625 -28.59078 -26.74383 -24.76680 -22.95966 -22.70297 -20.97289 -19.51470 -18.67749 -16.89298 -16.23210 -15.78909 -15.28492 -15.00588 -14.77955 -14.24207 -13.69581 -13.47872 -12.95247 -12.67168 -12.32465 -12.26778 -12.04170 -11.76139 -11.54651 -11.37584 -11.29678 -11.18029 -11.05012 -10.78763 -10.75659 -10.40244 -10.33014 -10.07246 -9.82241 -9.27681 -8.62845 -8.38592 -8.17269 -8.03045 -7.30103 -6.02442 -4.03931 1.35914 2.00885 2.37041 3.12648 3.31175 3.36049 3.38449 4.39987 4.74015 5.00082 5.04026 5.31537 5.32988 5.48249 5.52209 5.68846 5.78585 5.83971 5.91968 6.03790 6.08124 6.17930 6.29536 6.35492 6.45754 6.51686 6.59731 6.70106 6.73181 6.79295 6.85054 7.17131 7.38089 7.40484 7.68270 7.79863 8.07645 8.13058 8.50217 9.03831 9.59924 11.07649 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.016144 B = 0.007717 C = 0.007107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.009673 B = 3627.556708 C = 3939.020758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.028 3.972 3 N -0.511 5.511 4 C 0.188 3.812 5 C -0.504 4.504 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.125 3.875 14 H 0.104 0.896 15 C -0.182 4.182 16 C -0.138 4.138 17 C -0.129 4.129 18 C -0.246 4.246 19 S 0.103 5.897 20 C 0.096 3.904 21 H 0.074 0.926 22 C -0.132 4.132 23 N -0.840 5.840 24 H 0.057 0.943 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.043 0.957 29 H 0.029 0.971 30 H 0.003 0.997 31 H 0.261 0.739 32 H 0.135 0.865 33 H 0.130 0.870 34 H 0.153 0.847 35 H 0.050 0.950 36 H 0.047 0.953 37 H 0.077 0.923 38 H 0.337 0.663 39 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.444 -8.929 -6.479 12.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.102 4.102 3 N -0.233 5.233 4 C 0.063 3.937 5 C -0.543 4.543 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.204 1.204 13 C 0.012 3.988 14 H 0.122 0.878 15 C -0.301 4.301 16 C -0.168 4.168 17 C -0.160 4.160 18 C -0.381 4.381 19 S 0.367 5.633 20 C -0.016 4.016 21 H 0.092 0.908 22 C -0.189 4.189 23 N -0.368 5.368 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.021 0.979 31 H 0.070 0.930 32 H 0.153 0.847 33 H 0.148 0.852 34 H 0.171 0.829 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.149 0.851 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.842 -9.890 -7.912 13.236 hybrid contribution 1.752 1.870 2.611 3.658 sum 5.594 -8.020 -5.301 11.123 Atomic orbital electron populations 1.21703 0.94825 1.00223 1.02920 1.22434 0.96503 0.91217 1.00028 1.62519 1.12342 1.13678 1.34782 1.19824 0.96500 0.94132 0.83241 1.21097 1.49599 0.90570 0.93027 0.92002 1.24970 0.95601 0.98713 0.95202 1.69948 1.50551 1.35224 0.97934 0.86625 0.78599 0.85511 0.77043 1.20194 1.21464 1.20370 1.21387 0.87895 0.97260 0.92296 0.87829 1.25705 1.01468 0.96679 1.06246 1.20128 0.97728 1.00476 0.98513 1.20087 1.01910 0.92398 1.01631 1.25806 1.02048 1.02019 1.08198 1.84396 1.28739 1.06686 1.43463 1.21527 0.88575 0.99841 0.91673 0.90835 1.21650 1.01055 0.98552 0.97668 1.59141 1.03281 1.12103 1.62279 0.92397 0.93496 0.91819 0.92027 0.93956 0.95295 0.97904 0.92966 0.84735 0.85200 0.82902 0.93077 0.93346 0.90390 0.85060 0.85145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 10.02 37.16 0.37 -1.92 16 2 C 0.03 0.49 3.86 -3.82 -0.01 0.47 16 3 N -0.51 -10.21 3.44 -229.48 -0.79 -11.00 16 4 C 0.19 4.70 4.48 -4.98 -0.02 4.67 16 5 C -0.50 -13.67 8.61 -34.44 -0.30 -13.97 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.35 13.29 55.43 0.74 -25.61 16 9 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.13 2.24 1.84 -68.87 -0.13 2.11 16 14 H 0.10 2.10 7.43 -51.93 -0.39 1.72 16 15 C -0.18 -3.11 2.99 -36.00 -0.11 -3.22 16 16 C -0.14 -2.34 10.02 -41.21 -0.41 -2.75 16 17 C -0.13 -1.97 10.18 -41.21 -0.42 -2.39 16 18 C -0.25 -3.57 11.23 29.04 0.33 -3.25 16 19 S 0.10 1.58 18.87 -107.50 -2.03 -0.45 16 20 C 0.10 1.46 2.78 -67.71 -0.19 1.27 16 21 H 0.07 1.14 6.32 -51.93 -0.33 0.81 16 22 C -0.13 -1.99 9.39 37.16 0.35 -1.64 16 23 N -0.84 -11.44 9.17 -4.67 -0.04 -11.49 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 1.19 6.43 -51.93 -0.33 0.86 16 27 H 0.06 0.98 5.62 -51.93 -0.29 0.69 16 28 H 0.04 0.79 5.14 -30.96 -0.16 0.63 16 29 H 0.03 0.78 6.18 -51.93 -0.32 0.46 16 30 H 0.00 0.08 7.06 -51.93 -0.37 -0.28 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 33 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 34 H 0.15 1.83 8.06 -52.49 -0.42 1.41 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.08 1.28 7.43 -51.93 -0.39 0.90 16 38 H 0.34 4.38 9.00 -39.30 -0.35 4.03 16 39 H 0.34 4.49 8.16 -39.29 -0.32 4.17 16 LS Contribution 318.10 15.07 4.79 4.79 Total: -1.00 -28.50 318.10 -8.74 -37.24 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -5.75 Total: 9.26 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: -0.64 Total: -19.13 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: -0.09 Total: -48.10 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.03 Total: -0.45 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.50 -8.74 -37.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043106278.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.040 kcal (2) G-P(sol) polarization free energy of solvation -28.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds