Wall clock time and date at job start Mon Mar 30 2020 06:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47732 * 2 1 4 4 C 1.46900 * 111.00161 * 71.68643 * 3 2 1 5 5 C 1.50699 * 109.46927 * 200.63306 * 4 3 2 6 6 H 1.08001 * 120.00413 * 5.06595 * 5 4 3 7 7 C 1.37884 * 119.99749 * 185.07076 * 5 4 3 8 8 N 1.31512 * 120.00104 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99938 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46846 * 60.00202 * 9 7 5 11 11 H 1.48496 * 109.47117 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47161 * 300.00298 * 9 7 5 13 13 C 1.46896 * 111.00436 * 195.64954 * 3 2 1 14 14 H 1.08998 * 109.47342 * 185.79517 * 13 3 2 15 15 C 1.50698 * 109.46702 * 305.79642 * 13 3 2 16 16 C 1.33392 * 125.20251 * 235.15511 * 15 13 3 17 17 C 1.38421 * 114.92290 * 179.73521 * 16 15 13 18 18 C 1.33390 * 114.92257 * 359.97438 * 17 16 15 19 19 S 1.75884 * 125.20641 * 54.84803 * 15 13 3 20 20 C 1.53003 * 109.47364 * 65.79185 * 13 3 2 21 21 H 1.08997 * 109.47212 * 298.90772 * 20 13 3 22 22 C 1.53002 * 109.46842 * 58.90378 * 20 13 3 23 23 N 1.46896 * 109.46985 * 178.90099 * 20 13 3 24 24 H 1.08997 * 109.46669 * 63.70996 * 1 2 3 25 25 H 1.08995 * 109.47203 * 183.71432 * 1 2 3 26 26 H 1.08995 * 109.47018 * 303.71464 * 1 2 3 27 27 H 1.08994 * 109.47320 * 239.99308 * 2 1 3 28 28 H 1.09007 * 109.47010 * 119.99549 * 2 1 3 29 29 H 1.08992 * 109.47136 * 320.63290 * 4 3 2 30 30 H 1.08999 * 109.46891 * 80.63540 * 4 3 2 31 31 H 0.96993 * 120.00346 * 180.02562 * 8 7 5 32 32 H 1.07996 * 122.53750 * 359.74934 * 16 15 13 33 33 H 1.08003 * 122.53912 * 180.02562 * 17 16 15 34 34 H 1.08002 * 125.20673 * 179.97438 * 18 17 16 35 35 H 1.08994 * 109.47130 * 64.45981 * 22 20 13 36 36 H 1.09003 * 109.46934 * 184.46447 * 22 20 13 37 37 H 1.09002 * 109.47008 * 304.46231 * 22 20 13 38 38 H 1.00892 * 111.00337 * 300.00384 * 23 20 13 39 39 H 1.00907 * 111.00217 * 63.95787 * 23 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.7891 2.0249 1.3020 5 6 1.8172 3.5227 1.1374 6 1 1.9073 3.9561 0.1523 7 6 1.7280 4.3396 2.2445 8 7 1.6189 3.8118 3.4442 9 14 1.7635 6.1961 2.0407 10 1 0.6250 6.6223 1.1877 11 1 1.6523 6.8426 3.3729 12 1 3.0406 6.5993 1.3992 13 6 3.4403 1.4410 -0.3699 14 1 3.8037 2.4630 -0.2627 15 6 4.2308 0.5294 0.5330 16 6 5.2803 0.8977 1.2694 17 6 5.8447 -0.1137 2.0274 18 6 5.2534 -1.3033 1.9069 19 16 3.9062 -1.1810 0.7828 20 6 3.6073 0.9901 -1.8225 21 1 3.2621 -0.0385 -1.9256 22 6 2.7829 1.8989 -2.7365 23 7 5.0245 1.0713 -2.2005 24 1 -0.3632 0.4552 -0.9214 25 1 -0.3633 -1.0255 0.0666 26 1 -0.3633 0.5704 0.8548 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 0.8170 1.7202 1.6894 30 1 2.5698 1.7214 1.9994 31 1 1.5558 4.3865 4.2230 32 1 5.6605 1.9085 1.2742 33 1 6.6987 0.0482 2.6684 34 1 5.5562 -2.2040 2.4202 35 1 3.1790 2.9134 -2.6934 36 1 2.8381 1.5304 -3.7608 37 1 1.7440 1.9001 -2.4063 38 1 5.3685 2.0158 -2.1133 39 1 5.5818 0.4317 -1.6541 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043106278.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:12 Heat of formation + Delta-G solvation = 18.216845 kcal Electronic energy + Delta-G solvation = -19523.984881 eV Core-core repulsion = 16785.398103 eV Total energy + Delta-G solvation = -2738.586778 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.33444 -38.03176 -36.20556 -34.65979 -31.96885 -30.61679 -29.91589 -28.40846 -26.28275 -24.62703 -24.04982 -22.51411 -20.89194 -19.96713 -18.65269 -17.78561 -17.21352 -16.79926 -16.48054 -16.29636 -15.76303 -15.20154 -14.90520 -14.31191 -14.09957 -13.96953 -13.55602 -13.49283 -13.39057 -13.04989 -12.81165 -12.74817 -12.65239 -12.57029 -12.43145 -12.25972 -12.05193 -11.90301 -11.49405 -11.48131 -11.18896 -10.58368 -9.81761 -9.45596 -9.33261 -8.87272 -8.16761 -6.25750 0.10591 0.75775 1.13650 1.39296 1.41359 1.48990 1.86477 2.39842 3.15431 3.23697 3.66467 3.80186 4.11550 4.16793 4.23990 4.34246 4.45169 4.56550 4.66587 4.72780 4.75192 4.77645 4.96912 5.05096 5.13039 5.22245 5.25828 5.31386 5.32583 5.38081 5.44865 5.53300 5.58660 5.69487 6.12201 6.16513 6.39777 6.56041 6.63058 6.90303 7.43078 8.92815 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.016144 B = 0.007717 C = 0.007107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.009673 B = 3627.556708 C = 3939.020758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.027 3.973 3 N -0.513 5.513 4 C 0.210 3.790 5 C -0.513 4.513 6 H 0.060 0.940 7 C 0.005 3.995 8 N -0.933 5.933 9 Si 0.959 3.041 10 H -0.269 1.269 11 H -0.287 1.287 12 H -0.269 1.269 13 C 0.130 3.870 14 H 0.073 0.927 15 C -0.205 4.205 16 C -0.150 4.150 17 C -0.143 4.143 18 C -0.237 4.237 19 S 0.120 5.880 20 C 0.109 3.891 21 H 0.078 0.922 22 C -0.128 4.128 23 N -0.831 5.831 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.033 0.967 27 H 0.084 0.916 28 H 0.036 0.964 29 H 0.003 0.997 30 H -0.030 1.030 31 H 0.261 0.739 32 H 0.125 0.875 33 H 0.151 0.849 34 H 0.184 0.816 35 H 0.044 0.956 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.341 0.659 39 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.067 -9.757 -7.542 13.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.102 4.102 3 N -0.235 5.235 4 C 0.084 3.916 5 C -0.551 4.551 6 H 0.078 0.922 7 C -0.193 4.193 8 N -0.574 5.574 9 Si 0.785 3.215 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.194 1.194 13 C 0.017 3.983 14 H 0.091 0.909 15 C -0.324 4.324 16 C -0.181 4.181 17 C -0.173 4.173 18 C -0.372 4.372 19 S 0.384 5.616 20 C -0.004 4.004 21 H 0.096 0.904 22 C -0.185 4.185 23 N -0.359 5.359 24 H 0.082 0.918 25 H 0.096 0.904 26 H 0.052 0.948 27 H 0.102 0.898 28 H 0.054 0.946 29 H 0.021 0.979 30 H -0.013 1.013 31 H 0.070 0.930 32 H 0.143 0.857 33 H 0.169 0.831 34 H 0.201 0.799 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.154 0.846 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.475 -10.727 -9.006 14.704 hybrid contribution 1.595 2.052 2.944 3.927 sum 6.070 -8.675 -6.062 12.200 Atomic orbital electron populations 1.21684 0.94069 1.01720 1.01805 1.22526 0.97179 0.89749 1.00734 1.62428 1.14235 1.15314 1.31527 1.19363 0.93813 0.93593 0.84869 1.21399 1.48899 0.91912 0.92923 0.92171 1.25803 0.95233 1.03446 0.94849 1.70081 1.51769 1.36855 0.98697 0.85587 0.79022 0.79848 0.77076 1.19421 1.21240 1.19414 1.21295 0.86555 0.96127 0.94321 0.90942 1.25607 1.01893 0.98103 1.06818 1.20293 0.98140 1.00726 0.98927 1.20281 1.02867 0.92173 1.02003 1.26192 1.00910 1.02879 1.07258 1.84201 1.29155 1.04648 1.43587 1.21398 0.89593 0.99776 0.89645 0.90408 1.21603 1.00026 0.98346 0.98556 1.59144 1.02431 1.12536 1.61777 0.91828 0.90430 0.94791 0.89761 0.94610 0.97871 1.01266 0.93014 0.85675 0.83119 0.79872 0.93662 0.91561 0.91808 0.84614 0.84728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 10.02 71.98 0.72 -3.65 16 2 C 0.03 0.93 3.86 86.30 0.33 1.27 16 3 N -0.51 -20.82 3.44 -879.95 -3.02 -23.84 16 4 C 0.21 10.88 4.48 85.56 0.38 11.26 16 5 C -0.51 -28.53 8.61 25.60 0.22 -28.31 16 6 H 0.06 3.30 7.81 -2.91 -0.02 3.27 16 7 C 0.00 0.26 5.46 84.66 0.46 0.72 16 8 N -0.93 -56.20 13.29 21.45 0.28 -55.92 16 9 Si 0.96 44.35 29.54 68.60 2.03 46.37 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 13 C 0.13 4.70 1.84 44.17 0.08 4.79 16 14 H 0.07 3.04 7.43 -2.39 -0.02 3.03 16 15 C -0.21 -7.01 2.99 24.59 0.07 -6.94 16 16 C -0.15 -5.09 10.02 21.22 0.21 -4.88 16 17 C -0.14 -4.18 10.18 21.22 0.22 -3.96 16 18 C -0.24 -6.37 11.23 66.72 0.75 -5.63 16 19 S 0.12 3.50 18.87 -56.49 -1.07 2.44 16 20 C 0.11 3.18 2.78 44.92 0.12 3.31 16 21 H 0.08 2.25 6.32 -2.39 -0.02 2.23 16 22 C -0.13 -3.72 9.39 71.98 0.68 -3.05 16 23 N -0.83 -21.52 9.17 -168.68 -1.55 -23.06 16 24 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.03 1.28 6.43 -2.39 -0.02 1.27 16 27 H 0.08 2.52 5.62 -2.39 -0.01 2.51 16 28 H 0.04 1.31 5.14 -15.71 -0.08 1.23 16 29 H 0.00 0.19 6.18 -2.39 -0.01 0.17 16 30 H -0.03 -1.77 7.06 -2.39 -0.02 -1.78 16 31 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 32 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 33 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 34 H 0.18 3.74 8.06 -2.91 -0.02 3.72 16 35 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.06 2.05 7.43 -2.39 -0.02 2.03 16 38 H 0.34 8.57 9.00 -89.70 -0.81 7.77 16 39 H 0.34 8.60 8.16 -89.69 -0.73 7.87 16 Total: -1.00 -62.03 318.10 0.38 -61.65 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: -0.55 Total: 27.42 kcal Atomic # 6 Polarization: -39.31 SS G_CDS: 4.25 Total: -35.06 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -4.28 Total: -102.82 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: 3.50 SS G_CDS: -1.07 Total: 2.44 kcal Total: -62.03 0.38 -61.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043106278.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.866 kcal (2) G-P(sol) polarization free energy of solvation -62.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds