Wall clock time and date at job start Mon Mar 30 2020 06:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46896 * 109.47053 * 2 1 4 4 C 1.46902 * 111.00082 * 295.13336 * 3 2 1 5 5 C 1.50703 * 109.47024 * 288.85400 * 4 3 2 6 6 H 1.07994 * 120.00213 * 2.21097 * 5 4 3 7 7 C 1.37881 * 119.99972 * 182.20264 * 5 4 3 8 8 N 1.31517 * 119.99797 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00024 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47335 * 90.00378 * 9 7 5 11 11 H 1.48501 * 109.47081 * 210.00283 * 9 7 5 12 12 H 1.48497 * 109.47323 * 330.00148 * 9 7 5 13 13 C 1.46896 * 110.99867 * 59.08751 * 3 2 1 14 14 H 1.08997 * 109.47258 * 294.04310 * 13 3 2 15 15 C 1.50702 * 109.46793 * 174.04460 * 13 3 2 16 16 C 1.33395 * 125.20080 * 143.23742 * 15 13 3 17 17 C 1.38428 * 114.91933 * 179.86016 * 16 15 13 18 18 C 1.33382 * 114.92091 * 0.42453 * 17 16 15 19 19 S 1.75877 * 125.20650 * 323.53841 * 15 13 3 20 20 C 1.53001 * 109.47114 * 54.04536 * 13 3 2 21 21 H 1.08993 * 109.46862 * 294.80332 * 20 13 3 22 22 C 1.53001 * 109.47099 * 54.80554 * 20 13 3 23 23 N 1.46905 * 109.46913 * 174.80113 * 20 13 3 24 24 H 1.08997 * 109.47316 * 65.64469 * 1 2 3 25 25 H 1.09003 * 109.46885 * 185.64580 * 1 2 3 26 26 H 1.08994 * 109.46912 * 305.64395 * 1 2 3 27 27 H 1.09006 * 109.47098 * 240.00181 * 2 1 3 28 28 H 1.09001 * 109.47617 * 120.00521 * 2 1 3 29 29 H 1.08995 * 109.47463 * 48.85698 * 4 3 2 30 30 H 1.08997 * 109.46890 * 168.85862 * 4 3 2 31 31 H 0.97004 * 119.99551 * 179.97438 * 8 7 5 32 32 H 1.08000 * 122.53765 * 0.02562 * 16 15 13 33 33 H 1.08002 * 122.53785 * 180.20498 * 17 16 15 34 34 H 1.08006 * 125.20348 * 179.75197 * 18 17 16 35 35 H 1.09006 * 109.47072 * 186.88699 * 22 20 13 36 36 H 1.09010 * 109.46905 * 306.88353 * 22 20 13 37 37 H 1.08995 * 109.47777 * 66.88353 * 22 20 13 38 38 H 1.00899 * 111.00018 * 299.99988 * 23 20 13 39 39 H 1.00895 * 110.99974 * 63.95848 * 23 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6460 2.0755 -1.2416 5 6 2.4571 1.5250 -2.3862 6 1 3.1522 0.7163 -2.2157 7 6 2.3116 2.0537 -3.6513 8 7 1.4653 3.0387 -3.8589 9 14 3.3164 1.3709 -5.0702 10 1 2.5697 0.2625 -5.7174 11 1 3.5650 2.4465 -6.0634 12 1 4.6136 0.8610 -4.5579 13 6 1.5309 2.1161 1.1766 14 1 0.4479 2.2225 1.1142 15 6 2.1680 3.4811 1.2202 16 6 1.5624 4.5999 1.6212 17 6 2.3502 5.7374 1.5775 18 6 3.5927 5.5438 1.1328 19 16 3.8215 3.8440 0.7430 20 6 1.8951 1.3425 2.4454 21 1 1.3610 0.3925 2.4575 22 6 3.4024 1.0805 2.4679 23 7 1.5177 2.1318 3.6255 24 1 -0.3634 0.4238 -0.9362 25 1 -0.3633 -1.0227 0.1011 26 1 -0.3633 0.5988 0.8351 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 0.5856 1.9190 -1.4394 30 1 1.8425 3.1425 -1.1372 31 1 1.3632 3.4109 -4.7489 32 1 0.5361 4.6166 1.9571 33 1 1.9852 6.7086 1.8774 34 1 4.3433 6.3132 1.0276 35 1 3.6450 0.4266 3.3056 36 1 3.7021 0.6025 1.5351 37 1 3.9339 2.0256 2.5790 38 1 2.0000 3.0179 3.6372 39 1 0.5182 2.2634 3.6678 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043106281.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:15 Heat of formation + Delta-G solvation = 20.812150 kcal Electronic energy + Delta-G solvation = -19545.317411 eV Core-core repulsion = 16806.843174 eV Total energy + Delta-G solvation = -2738.474237 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.46225 -38.09402 -36.17918 -34.52314 -31.86349 -30.38722 -29.82936 -28.41368 -26.34537 -24.95773 -24.13869 -22.25342 -20.56241 -19.97592 -18.39160 -17.88293 -17.04052 -16.78388 -16.62470 -16.05432 -15.78859 -15.37852 -14.71378 -14.41990 -14.21711 -13.71899 -13.57511 -13.42057 -13.21297 -13.06325 -12.98082 -12.70908 -12.60395 -12.54810 -12.53582 -12.15277 -11.89989 -11.78955 -11.42431 -11.32786 -11.27443 -10.56537 -9.72219 -9.38439 -9.10715 -8.93892 -8.14996 -6.22330 0.22245 0.92215 1.37625 1.39667 1.40809 1.51741 1.92873 2.41583 3.17233 3.29399 3.73024 3.81555 4.14523 4.17677 4.29022 4.30139 4.42266 4.54197 4.64125 4.71934 4.74140 4.76920 4.96515 5.02558 5.11202 5.21473 5.26243 5.29213 5.40299 5.45990 5.48939 5.53488 5.66731 5.72686 6.12107 6.23564 6.41248 6.60414 6.67496 6.93287 7.45669 8.95261 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.017661 B = 0.008030 C = 0.006464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.030300 B = 3485.905833 C = 4330.831825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.054 3.946 3 N -0.523 5.523 4 C 0.210 3.790 5 C -0.507 4.507 6 H 0.059 0.941 7 C 0.003 3.997 8 N -0.934 5.934 9 Si 0.957 3.043 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.265 1.265 13 C 0.117 3.883 14 H 0.039 0.961 15 C -0.162 4.162 16 C -0.162 4.162 17 C -0.139 4.139 18 C -0.244 4.244 19 S 0.127 5.873 20 C 0.106 3.894 21 H 0.090 0.910 22 C -0.138 4.138 23 N -0.832 5.832 24 H 0.029 0.971 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.090 0.910 29 H -0.036 1.036 30 H 0.009 0.991 31 H 0.260 0.740 32 H 0.143 0.857 33 H 0.158 0.842 34 H 0.178 0.822 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.050 0.950 38 H 0.341 0.659 39 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.055 0.230 13.463 13.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.074 4.074 3 N -0.246 5.246 4 C 0.083 3.917 5 C -0.545 4.545 6 H 0.078 0.922 7 C -0.194 4.194 8 N -0.575 5.575 9 Si 0.783 3.217 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.190 1.190 13 C 0.004 3.996 14 H 0.057 0.943 15 C -0.280 4.280 16 C -0.193 4.193 17 C -0.170 4.170 18 C -0.380 4.380 19 S 0.392 5.608 20 C -0.006 4.006 21 H 0.108 0.892 22 C -0.196 4.196 23 N -0.361 5.361 24 H 0.048 0.952 25 H 0.095 0.905 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.108 0.892 29 H -0.018 1.018 30 H 0.027 0.973 31 H 0.069 0.931 32 H 0.161 0.839 33 H 0.175 0.825 34 H 0.196 0.804 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.155 0.845 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.068 -1.125 13.235 13.633 hybrid contribution -2.280 1.659 -1.641 3.262 sum 0.788 0.534 11.595 11.634 Atomic orbital electron populations 1.22294 0.98441 1.02450 1.00585 1.22123 0.92870 0.90100 1.02261 1.62354 1.58469 1.02291 1.01525 1.19387 0.92360 0.93472 0.86475 1.21396 1.22390 1.17823 0.92909 0.92249 1.25773 0.96702 0.95440 1.01498 1.70094 1.37877 1.26969 1.22593 0.85558 0.79385 0.77874 0.78887 1.20105 1.21205 1.18950 1.21079 0.95192 0.89273 0.94030 0.94309 1.24501 0.98129 0.99020 1.06393 1.20263 1.01618 0.91545 1.05890 1.20265 0.93321 1.00114 1.03264 1.26082 1.02557 1.00508 1.08883 1.84713 1.11386 1.01762 1.62954 1.21407 0.97788 0.96063 0.85371 0.89203 1.21775 0.94112 1.01814 1.01881 1.59130 1.12582 1.24213 1.40223 0.95213 0.90531 0.92512 0.92032 0.89203 1.01832 0.97336 0.93124 0.83907 0.82459 0.80428 0.91738 0.91880 0.93100 0.84528 0.84429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.89 9.15 71.98 0.66 -5.23 16 2 C 0.05 1.92 5.11 86.30 0.44 2.36 16 3 N -0.52 -20.86 3.26 -879.93 -2.87 -23.73 16 4 C 0.21 10.74 4.36 85.56 0.37 11.11 16 5 C -0.51 -28.13 8.55 25.60 0.22 -27.91 16 6 H 0.06 3.26 7.40 -2.91 -0.02 3.23 16 7 C 0.00 0.19 5.46 84.65 0.46 0.65 16 8 N -0.93 -56.42 13.29 21.45 0.28 -56.13 16 9 Si 0.96 44.64 29.54 68.60 2.03 46.66 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 13 C 0.12 3.91 1.36 44.17 0.06 3.97 16 14 H 0.04 1.37 6.49 -2.39 -0.02 1.36 16 15 C -0.16 -5.49 2.53 24.59 0.06 -5.42 16 16 C -0.16 -4.88 9.27 21.22 0.20 -4.68 16 17 C -0.14 -3.87 10.18 21.22 0.22 -3.65 16 18 C -0.24 -7.17 11.23 66.72 0.75 -6.42 16 19 S 0.13 4.43 20.63 -56.49 -1.17 3.27 16 20 C 0.11 2.89 2.70 44.91 0.12 3.01 16 21 H 0.09 2.34 6.49 -2.39 -0.02 2.32 16 22 C -0.14 -3.87 8.55 71.98 0.62 -3.25 16 23 N -0.83 -19.54 9.14 -168.67 -1.54 -21.08 16 24 H 0.03 1.18 6.57 -2.39 -0.02 1.16 16 25 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 26 H 0.06 1.71 6.13 -2.39 -0.01 1.70 16 27 H 0.06 2.44 7.07 -2.38 -0.02 2.42 16 28 H 0.09 2.64 5.83 -2.39 -0.01 2.63 16 29 H -0.04 -2.03 6.10 -2.39 -0.01 -2.04 16 30 H 0.01 0.48 6.35 -2.39 -0.02 0.47 16 31 H 0.26 14.93 8.31 -92.71 -0.77 14.15 16 32 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 33 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 34 H 0.18 4.21 8.06 -2.91 -0.02 4.19 16 35 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.06 1.98 6.63 -2.38 -0.02 1.96 16 37 H 0.05 1.48 6.27 -2.39 -0.01 1.46 16 38 H 0.34 8.27 7.22 -89.69 -0.65 7.62 16 39 H 0.34 7.06 9.07 -89.70 -0.81 6.24 16 Total: -1.00 -62.80 312.01 0.52 -62.28 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: -0.39 Total: 24.18 kcal Atomic # 6 Polarization: -39.64 SS G_CDS: 4.17 Total: -35.46 kcal Atomic # 7 Polarization: -96.81 SS G_CDS: -4.12 Total: -100.94 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: 4.43 SS G_CDS: -1.17 Total: 3.27 kcal Total: -62.80 0.52 -62.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043106281.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.097 kcal (2) G-P(sol) polarization free energy of solvation -62.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds