Wall clock time and date at job start Mon Mar 30 2020 06:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46975 * 2 1 4 4 H 1.08999 * 109.47064 * 55.00000 * 3 2 1 5 5 N 1.46908 * 109.47056 * 294.99980 * 3 2 1 6 6 C 1.53002 * 109.47111 * 175.00013 * 3 2 1 7 7 H 1.09008 * 109.46975 * 60.00093 * 6 3 2 8 8 C 1.50699 * 109.46971 * 179.97438 * 6 3 2 9 9 C 1.38424 * 122.53978 * 53.56347 * 8 6 3 10 10 C 1.33395 * 114.92224 * 179.97438 * 9 8 6 11 11 S 1.75885 * 109.59166 * 0.02562 * 10 9 8 12 12 C 1.33392 * 122.54138 * 233.27701 * 8 6 3 13 13 N 1.46894 * 109.47137 * 300.00043 * 6 3 2 14 14 C 1.46899 * 110.99911 * 294.23857 * 13 6 3 15 15 C 1.46901 * 110.99771 * 170.28728 * 13 6 3 16 16 C 1.50707 * 109.46809 * 189.99914 * 15 13 6 17 17 H 1.07995 * 119.99906 * 359.97438 * 16 15 13 18 18 C 1.37875 * 119.99766 * 180.02562 * 16 15 13 19 19 N 1.31520 * 120.00229 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00009 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47117 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47554 * 119.99720 * 20 18 16 23 23 H 1.48506 * 109.47177 * 239.99729 * 20 18 16 24 24 H 1.08999 * 109.47261 * 60.00185 * 1 2 3 25 25 H 1.08995 * 109.46859 * 300.00145 * 1 2 3 26 26 H 1.09002 * 109.46890 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47261 * 119.99815 * 2 1 3 28 28 H 1.08997 * 109.47325 * 240.00068 * 2 1 3 29 29 H 1.00900 * 110.99820 * 300.00494 * 5 3 2 30 30 H 1.00900 * 110.99702 * 63.95300 * 5 3 2 31 31 H 1.08000 * 122.53599 * 359.96020 * 9 8 6 32 32 H 1.07997 * 125.20014 * 179.97438 * 10 9 8 33 33 H 1.08005 * 125.20057 * 0.02562 * 12 8 6 34 34 H 1.09000 * 109.47302 * 48.72312 * 14 13 6 35 35 H 1.09003 * 109.47385 * 168.72171 * 14 13 6 36 36 H 1.09002 * 109.47533 * 288.72339 * 14 13 6 37 37 H 1.08997 * 109.47291 * 310.00080 * 15 13 6 38 38 H 1.08993 * 109.47100 * 70.00006 * 15 13 6 39 39 H 0.96994 * 120.00075 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6514 2.0993 -1.2553 6 6 3.5649 1.4444 0.1257 7 1 3.9995 0.9054 -0.7162 8 6 4.0672 2.8652 0.1251 9 6 3.5872 3.8250 0.9995 10 6 4.1387 5.0324 0.8668 11 16 5.3337 4.9964 -0.4233 12 6 5.0119 3.2919 -0.7144 13 7 3.9535 0.7877 1.3809 14 6 3.5002 1.5633 2.5432 15 6 5.4045 0.5641 1.4307 16 6 5.7363 -0.3214 2.6042 17 1 4.9482 -0.6816 3.2487 18 6 7.0462 -0.6707 2.8555 19 7 8.0061 -0.2316 2.0709 20 14 7.4575 -1.7688 4.3095 21 1 6.2086 -2.1249 5.0298 22 1 8.1193 -3.0063 3.8238 23 1 8.3716 -1.0478 5.2314 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 2.0421 1.6180 -2.0513 30 1 0.6476 2.1684 -1.3315 31 1 2.8240 3.6125 1.7334 32 1 3.8888 5.8995 1.4600 33 1 5.5025 2.6842 -1.4604 34 1 2.4498 1.8259 2.4175 35 1 3.6197 0.9664 3.4474 36 1 4.0946 2.4731 2.6272 37 1 5.7298 0.0825 0.5086 38 1 5.9159 1.5203 1.5410 39 1 8.9275 -0.4777 2.2475 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043116080.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:27 Heat of formation + Delta-G solvation = 39.518504 kcal Electronic energy + Delta-G solvation = -19239.792794 eV Core-core repulsion = 16502.129725 eV Total energy + Delta-G solvation = -2737.663069 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.44925 -36.12565 -34.93479 -32.40391 -30.72733 -29.59994 -27.98142 -26.59433 -24.85396 -23.87354 -22.04773 -20.66755 -19.84189 -18.27960 -16.89967 -16.52048 -15.84025 -15.12054 -14.90925 -14.43777 -14.06696 -13.66771 -13.43547 -13.36932 -12.68908 -12.44862 -12.31708 -12.17143 -12.05034 -11.78241 -11.36677 -11.16483 -11.11298 -10.88500 -10.66754 -10.60798 -10.56920 -10.27045 -10.19669 -9.78280 -9.17086 -8.46818 -8.41483 -8.27060 -7.85903 -7.21832 -6.00312 -4.01402 1.52490 2.14515 2.45126 3.26472 3.31492 3.38965 3.43350 4.41984 4.66726 4.98502 5.23601 5.28031 5.33579 5.35338 5.38439 5.58535 5.64389 5.80376 5.84717 5.98787 6.00750 6.09400 6.15793 6.17414 6.43727 6.48699 6.51870 6.61924 6.76641 6.89232 6.98535 7.26418 7.39668 7.46061 7.62641 7.82077 8.09161 8.20844 8.56215 9.06482 9.62508 11.10475 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014696 B = 0.007208 C = 0.005339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.832699 B = 3883.802261 C = 5243.344482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.153 4.153 3 C 0.105 3.895 4 H 0.078 0.922 5 N -0.839 5.839 6 C 0.145 3.855 7 H 0.077 0.923 8 C -0.093 4.093 9 C -0.108 4.108 10 C -0.225 4.225 11 S 0.057 5.943 12 C -0.194 4.194 13 N -0.521 5.521 14 C 0.029 3.971 15 C 0.196 3.804 16 C -0.506 4.506 17 H 0.063 0.937 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.895 3.105 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 H 0.045 0.955 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.089 0.911 28 H 0.055 0.945 29 H 0.335 0.665 30 H 0.335 0.665 31 H 0.136 0.864 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.045 0.955 35 H 0.067 0.933 36 H 0.028 0.972 37 H 0.026 0.974 38 H -0.004 1.004 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.871 6.783 -5.494 14.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.193 4.193 3 C -0.007 4.007 4 H 0.096 0.904 5 N -0.368 5.368 6 C 0.033 3.967 7 H 0.095 0.905 8 C -0.106 4.106 9 C -0.139 4.139 10 C -0.360 4.360 11 S 0.319 5.681 12 C -0.330 4.330 13 N -0.244 5.244 14 C -0.120 4.120 15 C 0.071 3.929 16 C -0.544 4.544 17 H 0.081 0.919 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.723 3.277 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.212 1.212 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.147 0.853 30 H 0.148 0.852 31 H 0.153 0.847 32 H 0.173 0.827 33 H 0.173 0.827 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.047 0.953 37 H 0.044 0.956 38 H 0.014 0.986 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.522 8.028 -5.841 14.467 hybrid contribution -0.487 -1.729 1.141 2.128 sum -11.009 6.299 -4.701 13.527 Atomic orbital electron populations 1.21798 0.96844 1.01288 1.00934 1.22242 0.94568 0.98580 1.03907 1.21417 0.94590 0.92295 0.92412 0.90392 1.58844 1.15372 1.58482 1.04090 1.20481 0.93406 0.87552 0.95277 0.90471 1.19457 0.97109 0.98178 0.95893 1.20145 1.01669 0.91906 1.00225 1.25367 1.04083 1.01799 1.04718 1.83932 1.41589 1.09008 1.33555 1.25314 1.04414 0.97056 1.06258 1.62462 1.19194 1.43509 0.99195 1.22515 0.97418 0.96872 0.95166 1.19709 0.79918 0.95657 0.97606 1.21192 0.92245 1.29573 1.11422 0.91919 1.24976 0.96391 0.96479 0.96754 1.69973 1.00048 1.45500 1.38147 0.86488 0.78338 0.80342 0.82515 1.19709 1.21071 1.21172 0.93646 0.92941 0.92975 0.89228 0.92591 0.85253 0.85208 0.84662 0.82743 0.82662 0.93669 0.91406 0.95346 0.95625 0.98595 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.68 37.16 0.36 -1.27 16 2 C -0.15 -2.05 5.50 -26.73 -0.15 -2.20 16 3 C 0.10 1.46 1.97 -67.70 -0.13 1.32 16 4 H 0.08 1.13 5.63 -51.93 -0.29 0.83 16 5 N -0.84 -10.09 8.76 -4.66 -0.04 -10.13 16 6 C 0.15 2.51 1.86 -68.87 -0.13 2.38 16 7 H 0.08 1.41 7.82 -51.92 -0.41 1.00 16 8 C -0.09 -1.60 3.37 -106.25 -0.36 -1.96 16 9 C -0.11 -1.77 7.02 -41.21 -0.29 -2.05 16 10 C -0.22 -3.41 11.23 29.04 0.33 -3.09 16 11 S 0.06 0.87 23.34 -107.50 -2.51 -1.64 16 12 C -0.19 -3.35 10.92 29.04 0.32 -3.04 16 13 N -0.52 -10.66 3.85 -237.73 -0.92 -11.58 16 14 C 0.03 0.54 7.48 60.06 0.45 0.99 16 15 C 0.20 5.03 4.38 -4.97 -0.02 5.01 16 16 C -0.51 -14.08 8.61 -34.44 -0.30 -14.38 16 17 H 0.06 1.73 7.10 -52.49 -0.37 1.35 16 18 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 20 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H 0.04 0.43 6.87 -51.93 -0.36 0.07 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.09 1.42 7.45 -51.93 -0.39 1.04 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.34 3.82 9.00 -39.29 -0.35 3.47 16 30 H 0.34 3.42 7.55 -39.29 -0.30 3.12 16 31 H 0.14 2.06 5.55 -52.49 -0.29 1.77 16 32 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 33 H 0.16 2.57 8.06 -52.48 -0.42 2.15 16 34 H 0.04 0.72 5.27 -51.93 -0.27 0.44 16 35 H 0.07 1.37 7.08 -51.93 -0.37 1.00 16 36 H 0.03 0.56 5.70 -51.93 -0.30 0.27 16 37 H 0.03 0.71 7.93 -51.93 -0.41 0.30 16 38 H 0.00 -0.11 7.62 -51.93 -0.40 -0.50 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 317.00 15.07 4.78 4.78 Total: -1.00 -29.58 317.00 -8.74 -38.33 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -5.75 Total: 6.40 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -0.02 Total: -16.82 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: -0.22 Total: -47.73 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.51 Total: -1.64 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.58 -8.74 -38.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043116080.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.845 kcal (2) G-P(sol) polarization free energy of solvation -29.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds