Wall clock time and date at job start Mon Mar 30 2020 06:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46975 * 2 1 4 4 H 1.08999 * 109.47064 * 55.00000 * 3 2 1 5 5 N 1.46908 * 109.47056 * 294.99980 * 3 2 1 6 6 C 1.53002 * 109.47111 * 175.00013 * 3 2 1 7 7 H 1.09008 * 109.46975 * 60.00093 * 6 3 2 8 8 C 1.50699 * 109.46971 * 179.97438 * 6 3 2 9 9 C 1.38424 * 122.53978 * 53.56347 * 8 6 3 10 10 C 1.33395 * 114.92224 * 179.97438 * 9 8 6 11 11 S 1.75885 * 109.59166 * 0.02562 * 10 9 8 12 12 C 1.33392 * 122.54138 * 233.27701 * 8 6 3 13 13 N 1.46894 * 109.47137 * 300.00043 * 6 3 2 14 14 C 1.46899 * 110.99911 * 294.23857 * 13 6 3 15 15 C 1.46901 * 110.99771 * 170.28728 * 13 6 3 16 16 C 1.50707 * 109.46809 * 189.99914 * 15 13 6 17 17 H 1.07995 * 119.99906 * 359.97438 * 16 15 13 18 18 C 1.37875 * 119.99766 * 180.02562 * 16 15 13 19 19 N 1.31520 * 120.00229 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00009 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47117 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47554 * 119.99720 * 20 18 16 23 23 H 1.48506 * 109.47177 * 239.99729 * 20 18 16 24 24 H 1.08999 * 109.47261 * 60.00185 * 1 2 3 25 25 H 1.08995 * 109.46859 * 300.00145 * 1 2 3 26 26 H 1.09002 * 109.46890 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47261 * 119.99815 * 2 1 3 28 28 H 1.08997 * 109.47325 * 240.00068 * 2 1 3 29 29 H 1.00900 * 110.99820 * 300.00494 * 5 3 2 30 30 H 1.00900 * 110.99702 * 63.95300 * 5 3 2 31 31 H 1.08000 * 122.53599 * 359.96020 * 9 8 6 32 32 H 1.07997 * 125.20014 * 179.97438 * 10 9 8 33 33 H 1.08005 * 125.20057 * 0.02562 * 12 8 6 34 34 H 1.09000 * 109.47302 * 48.72312 * 14 13 6 35 35 H 1.09003 * 109.47385 * 168.72171 * 14 13 6 36 36 H 1.09002 * 109.47533 * 288.72339 * 14 13 6 37 37 H 1.08997 * 109.47291 * 310.00080 * 15 13 6 38 38 H 1.08993 * 109.47100 * 70.00006 * 15 13 6 39 39 H 0.96994 * 120.00075 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6514 2.0993 -1.2553 6 6 3.5649 1.4444 0.1257 7 1 3.9995 0.9054 -0.7162 8 6 4.0672 2.8652 0.1251 9 6 3.5872 3.8250 0.9995 10 6 4.1387 5.0324 0.8668 11 16 5.3337 4.9964 -0.4233 12 6 5.0119 3.2919 -0.7144 13 7 3.9535 0.7877 1.3809 14 6 3.5002 1.5633 2.5432 15 6 5.4045 0.5641 1.4307 16 6 5.7363 -0.3214 2.6042 17 1 4.9482 -0.6816 3.2487 18 6 7.0462 -0.6707 2.8555 19 7 8.0061 -0.2316 2.0709 20 14 7.4575 -1.7688 4.3095 21 1 6.2086 -2.1249 5.0298 22 1 8.1193 -3.0063 3.8238 23 1 8.3716 -1.0478 5.2314 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 2.0421 1.6180 -2.0513 30 1 0.6476 2.1684 -1.3315 31 1 2.8240 3.6125 1.7334 32 1 3.8888 5.8995 1.4600 33 1 5.5025 2.6842 -1.4604 34 1 2.4498 1.8259 2.4175 35 1 3.6197 0.9664 3.4474 36 1 4.0946 2.4731 2.6272 37 1 5.7298 0.0825 0.5086 38 1 5.9159 1.5203 1.5410 39 1 8.9275 -0.4777 2.2475 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043116080.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:27 Heat of formation + Delta-G solvation = 19.632106 kcal Electronic energy + Delta-G solvation = -19240.655133 eV Core-core repulsion = 16502.129725 eV Total energy + Delta-G solvation = -2738.525408 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.83505 -37.31533 -36.53049 -34.46247 -31.78173 -30.86964 -29.76478 -28.07753 -26.59793 -25.06635 -23.66528 -22.13084 -21.12802 -19.61275 -18.52897 -18.16649 -17.26120 -16.67657 -16.45622 -15.85221 -15.37629 -15.04508 -14.85700 -14.73640 -14.08284 -13.95398 -13.76085 -13.41201 -13.39005 -13.30679 -13.04385 -12.72872 -12.51334 -12.43014 -12.30760 -12.15638 -12.01722 -11.70575 -11.54484 -11.44861 -11.13967 -10.61114 -9.61061 -9.45583 -9.13962 -8.91138 -8.18495 -6.28273 0.23615 0.88733 1.17491 1.40146 1.40616 1.53982 1.95247 2.40575 3.14074 3.27683 3.79594 4.00598 4.07760 4.20383 4.25387 4.37031 4.48441 4.57880 4.63564 4.73152 4.80094 4.84672 4.85514 5.05521 5.11912 5.21211 5.25140 5.29621 5.34589 5.38272 5.53979 5.60175 5.64676 5.70705 6.07422 6.30764 6.39940 6.65562 6.75945 6.89422 7.41344 8.92479 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014696 B = 0.007208 C = 0.005339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.832699 B = 3883.802261 C = 5243.344482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.150 4.150 3 C 0.121 3.879 4 H 0.081 0.919 5 N -0.837 5.837 6 C 0.145 3.855 7 H 0.058 0.942 8 C -0.099 4.099 9 C -0.126 4.126 10 C -0.218 4.218 11 S 0.078 5.922 12 C -0.226 4.226 13 N -0.522 5.522 14 C 0.035 3.965 15 C 0.219 3.781 16 C -0.520 4.520 17 H 0.064 0.936 18 C 0.001 3.999 19 N -0.934 5.934 20 Si 0.966 3.034 21 H -0.262 1.262 22 H -0.279 1.279 23 H -0.280 1.280 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.340 0.660 30 H 0.350 0.650 31 H 0.148 0.852 32 H 0.186 0.814 33 H 0.150 0.850 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.019 0.981 37 H -0.006 1.006 38 H -0.038 1.038 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.639 7.335 -4.710 16.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.190 4.190 3 C 0.008 3.992 4 H 0.099 0.901 5 N -0.368 5.368 6 C 0.033 3.967 7 H 0.076 0.924 8 C -0.113 4.113 9 C -0.157 4.157 10 C -0.353 4.353 11 S 0.341 5.659 12 C -0.362 4.362 13 N -0.244 5.244 14 C -0.114 4.114 15 C 0.093 3.907 16 C -0.558 4.558 17 H 0.082 0.918 18 C -0.197 4.197 19 N -0.575 5.575 20 Si 0.791 3.209 21 H -0.186 1.186 22 H -0.205 1.205 23 H -0.206 1.206 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.152 0.848 30 H 0.165 0.835 31 H 0.165 0.835 32 H 0.203 0.797 33 H 0.168 0.832 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.038 0.962 37 H 0.012 0.988 38 H -0.020 1.020 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.327 8.589 -5.071 15.857 hybrid contribution 0.067 -1.840 0.824 2.017 sum -12.261 6.749 -4.247 14.626 Atomic orbital electron populations 1.21738 0.94333 1.02027 1.02064 1.22180 0.96710 0.97732 1.02357 1.21171 0.91645 0.92853 0.93489 0.90127 1.58756 1.16595 1.58126 1.03353 1.20511 0.95904 0.87391 0.92906 0.92379 1.19521 0.97240 0.98188 0.96306 1.20257 1.02647 0.92077 1.00681 1.25801 1.02857 1.02460 1.04182 1.83804 1.41469 1.07126 1.33480 1.25482 1.05034 0.98689 1.06992 1.62334 1.15602 1.45201 1.01271 1.22496 0.99266 0.95810 0.93780 1.19235 0.82859 0.93215 0.95406 1.21525 0.92557 1.29783 1.11981 0.91803 1.25893 0.96274 0.97893 0.99638 1.70108 1.00486 1.46860 1.40040 0.85383 0.78372 0.78274 0.78887 1.18565 1.20528 1.20632 0.91828 0.92440 0.92515 0.91930 0.93074 0.84769 0.83490 0.83472 0.79717 0.83244 0.90107 0.92892 0.96209 0.98822 1.02007 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.68 71.98 0.70 -2.06 16 2 C -0.15 -3.87 5.50 30.60 0.17 -3.70 16 3 C 0.12 3.21 1.97 44.92 0.09 3.30 16 4 H 0.08 2.13 5.63 -2.39 -0.01 2.12 16 5 N -0.84 -18.67 8.76 -168.65 -1.48 -20.15 16 6 C 0.14 5.09 1.86 44.17 0.08 5.17 16 7 H 0.06 2.23 7.82 -2.38 -0.02 2.21 16 8 C -0.10 -3.42 3.37 -20.92 -0.07 -3.49 16 9 C -0.13 -3.94 7.02 21.22 0.15 -3.79 16 10 C -0.22 -6.20 11.23 66.72 0.75 -5.45 16 11 S 0.08 2.36 23.34 -56.49 -1.32 1.04 16 12 C -0.23 -7.97 10.92 66.72 0.73 -7.24 16 13 N -0.52 -21.82 3.85 -906.04 -3.49 -25.32 16 14 C 0.03 1.29 7.48 127.69 0.96 2.25 16 15 C 0.22 11.73 4.38 85.56 0.37 12.10 16 16 C -0.52 -29.59 8.61 25.60 0.22 -29.37 16 17 H 0.06 3.55 7.10 -2.91 -0.02 3.53 16 18 C 0.00 0.05 5.46 84.65 0.46 0.51 16 19 N -0.93 -57.11 13.29 21.45 0.28 -56.82 16 20 Si 0.97 44.75 29.54 68.60 2.03 46.78 16 21 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 24 H 0.06 0.99 6.87 -2.39 -0.02 0.97 16 25 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.06 1.97 7.45 -2.39 -0.02 1.95 16 28 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.34 7.33 9.00 -89.69 -0.81 6.52 16 30 H 0.35 6.16 7.55 -89.69 -0.68 5.48 16 31 H 0.15 4.16 5.55 -2.91 -0.02 4.14 16 32 H 0.19 4.02 8.06 -2.91 -0.02 4.00 16 33 H 0.15 5.26 8.06 -2.91 -0.02 5.24 16 34 H 0.08 2.42 5.27 -2.39 -0.01 2.41 16 35 H 0.05 2.12 7.08 -2.39 -0.02 2.10 16 36 H 0.02 0.77 5.70 -2.39 -0.01 0.76 16 37 H -0.01 -0.37 7.93 -2.39 -0.02 -0.39 16 38 H -0.04 -2.25 7.62 -2.39 -0.02 -2.27 16 39 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -64.78 317.00 0.21 -64.58 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: -0.42 Total: 21.67 kcal Atomic # 6 Polarization: -36.38 SS G_CDS: 4.60 Total: -31.77 kcal Atomic # 7 Polarization: -97.61 SS G_CDS: -4.68 Total: -102.29 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -1.32 Total: 1.04 kcal Total: -64.78 0.21 -64.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043116080.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.210 kcal (2) G-P(sol) polarization free energy of solvation -64.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds