Wall clock time and date at job start Mon Mar 30 2020 06:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47381 * 2 1 4 4 H 1.09003 * 109.47235 * 304.99569 * 3 2 1 5 5 N 1.46902 * 109.47349 * 64.99437 * 3 2 1 6 6 C 1.53002 * 109.47456 * 184.99856 * 3 2 1 7 7 H 1.09004 * 109.46632 * 304.50680 * 6 3 2 8 8 C 1.50694 * 109.46880 * 64.50151 * 6 3 2 9 9 C 1.38426 * 122.54078 * 275.26066 * 8 6 3 10 10 C 1.33390 * 114.91990 * 179.76541 * 9 8 6 11 11 S 1.75889 * 109.59293 * 0.47879 * 10 9 8 12 12 C 1.33391 * 122.53697 * 95.55394 * 8 6 3 13 13 N 1.46899 * 109.47532 * 184.50444 * 6 3 2 14 14 C 1.46900 * 110.99727 * 321.89814 * 13 6 3 15 15 C 1.46905 * 111.00020 * 85.84606 * 13 6 3 16 16 C 1.50693 * 109.47270 * 170.00239 * 15 13 6 17 17 H 1.08005 * 120.00042 * 0.02562 * 16 15 13 18 18 C 1.37872 * 120.00055 * 179.97438 * 16 15 13 19 19 N 1.31509 * 120.00247 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99743 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46941 * 60.00658 * 20 18 16 22 22 H 1.48507 * 109.47038 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47471 * 300.00111 * 20 18 16 24 24 H 1.08997 * 109.46751 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47182 * 300.00552 * 1 2 3 26 26 H 1.09001 * 109.46350 * 60.00581 * 1 2 3 27 27 H 1.08996 * 109.47182 * 239.99448 * 2 1 3 28 28 H 1.09006 * 109.46886 * 119.99887 * 2 1 3 29 29 H 1.00897 * 111.00301 * 296.05159 * 5 3 2 30 30 H 1.00901 * 110.99829 * 60.00202 * 5 3 2 31 31 H 1.07997 * 122.54163 * 359.97438 * 9 8 6 32 32 H 1.08003 * 125.20546 * 180.20884 * 10 9 8 33 33 H 1.07998 * 125.20340 * 359.97438 * 12 8 6 34 34 H 1.09001 * 109.47409 * 70.13152 * 14 13 6 35 35 H 1.09002 * 109.46880 * 190.13505 * 14 13 6 36 36 H 1.09006 * 109.46975 * 310.13112 * 14 13 6 37 37 H 1.09001 * 109.47066 * 290.00269 * 15 13 6 38 38 H 1.08999 * 109.46689 * 49.99633 * 15 13 6 39 39 H 0.96999 * 120.00271 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8419 5 7 1.6514 2.0993 1.2552 6 6 3.5649 1.4443 -0.1257 7 1 3.9958 0.8381 0.6712 8 6 3.9594 0.8708 -1.4622 9 6 4.0910 -0.4901 -1.6790 10 6 4.4419 -0.8302 -2.9201 11 16 4.6393 0.6201 -3.8956 12 6 4.2138 1.6363 -2.5245 13 7 4.0636 2.8218 -0.0175 14 6 3.1618 3.7628 -0.6950 15 6 4.2611 3.2013 1.3879 16 6 4.9972 4.5145 1.4550 17 1 5.2888 5.0172 0.5446 18 6 5.2975 5.0748 2.6784 19 7 4.9421 4.4629 3.7869 20 14 6.2106 6.7024 2.7614 21 1 5.4168 7.7509 2.0718 22 1 6.4102 7.0861 4.1821 23 1 7.5311 6.5637 2.0965 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 0.6477 2.1684 1.3314 30 1 2.0422 1.6180 2.0512 31 1 3.9191 -1.2212 -0.9029 32 1 4.5873 -1.8412 -3.2712 33 1 4.1655 2.7151 -2.5404 34 1 2.2328 3.8459 -0.1310 35 1 3.6379 4.7414 -0.7573 36 1 2.9456 3.3994 -1.6997 37 1 3.2920 3.3026 1.8766 38 1 4.8442 2.4316 1.8935 39 1 5.1537 4.8569 4.6476 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043116084.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:30 Heat of formation + Delta-G solvation = 48.481563 kcal Electronic energy + Delta-G solvation = -19224.095882 eV Core-core repulsion = 16486.821481 eV Total energy + Delta-G solvation = -2737.274401 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.44823 -36.45414 -34.74393 -32.37170 -30.40437 -29.69347 -27.77794 -26.92657 -24.90063 -23.43236 -22.49119 -20.61788 -19.51017 -18.39760 -17.44222 -16.17175 -15.68459 -15.09019 -14.85815 -14.47914 -14.21172 -13.77715 -13.64529 -13.11467 -12.76593 -12.41617 -12.34935 -12.17495 -12.11123 -11.63535 -11.32381 -11.14750 -10.98299 -10.85266 -10.68945 -10.62658 -10.51446 -10.35944 -10.12073 -9.67011 -9.04773 -8.46845 -8.39348 -8.27121 -8.04885 -6.81424 -5.87681 -3.85879 1.32208 1.94473 2.26773 3.01741 3.41149 3.44593 3.48066 4.53448 4.85194 4.89189 5.10719 5.14802 5.22059 5.39251 5.48258 5.52508 5.63147 5.75373 5.81030 5.85990 5.93358 5.99757 6.12041 6.19550 6.24523 6.30122 6.44123 6.70796 6.73667 6.91295 6.98958 7.46980 7.56425 7.79444 7.90446 7.96926 8.27577 8.44749 8.76904 9.21969 9.75849 11.22791 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.018827 B = 0.006067 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.898887 B = 4614.136045 C = 5630.688224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.164 4.164 3 C 0.074 3.926 4 H 0.079 0.921 5 N -0.825 5.825 6 C 0.146 3.854 7 H 0.077 0.923 8 C -0.085 4.085 9 C -0.121 4.121 10 C -0.223 4.223 11 S 0.052 5.948 12 C -0.179 4.179 13 N -0.522 5.522 14 C 0.028 3.972 15 C 0.185 3.815 16 C -0.499 4.499 17 H 0.056 0.944 18 C 0.054 3.946 19 N -0.900 5.900 20 Si 0.892 3.108 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.279 1.279 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.330 0.670 30 H 0.343 0.657 31 H 0.135 0.865 32 H 0.157 0.843 33 H 0.175 0.825 34 H 0.043 0.957 35 H 0.061 0.939 36 H 0.037 0.963 37 H 0.038 0.962 38 H 0.015 0.985 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.020 -10.717 -10.946 16.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.204 4.204 3 C -0.040 4.040 4 H 0.097 0.903 5 N -0.355 5.355 6 C 0.032 3.968 7 H 0.095 0.905 8 C -0.098 4.098 9 C -0.153 4.153 10 C -0.358 4.358 11 S 0.315 5.685 12 C -0.314 4.314 13 N -0.245 5.245 14 C -0.121 4.121 15 C 0.060 3.940 16 C -0.538 4.538 17 H 0.075 0.925 18 C -0.146 4.146 19 N -0.541 5.541 20 Si 0.720 3.280 21 H -0.205 1.205 22 H -0.216 1.216 23 H -0.205 1.205 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.144 0.856 30 H 0.157 0.843 31 H 0.153 0.847 32 H 0.175 0.825 33 H 0.192 0.808 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.033 0.967 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.733 -9.732 -12.766 17.046 hybrid contribution -0.995 -0.431 2.230 2.480 sum -6.728 -10.162 -10.536 16.110 Atomic orbital electron populations 1.21763 0.96318 1.01205 1.01524 1.22503 0.95807 0.99608 1.02478 1.22141 0.96647 0.91517 0.93685 0.90265 1.59052 1.14966 1.57825 1.03686 1.20298 0.90955 0.93502 0.92000 0.90463 1.18954 1.02159 0.92150 0.96506 1.20078 1.02506 0.95916 0.96790 1.25393 1.11180 1.01442 0.97764 1.84121 1.70054 0.98252 1.16096 1.25809 1.07306 1.03799 0.94481 1.62357 1.44016 0.98333 1.19770 1.22419 0.96488 0.96964 0.96180 1.19971 0.97326 0.95221 0.81443 1.21188 1.35352 1.05340 0.91948 0.92544 1.24910 0.96420 0.97470 0.95773 1.69939 1.47829 1.39068 0.97236 0.86667 0.80369 0.84334 0.76597 1.20488 1.21558 1.20455 0.93110 0.93005 0.92879 0.91000 0.92309 0.85614 0.84309 0.84743 0.82538 0.80774 0.93868 0.92050 0.94412 0.94467 0.96733 0.93251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.68 37.16 0.36 -1.23 16 2 C -0.16 -1.98 5.26 -26.73 -0.14 -2.12 16 3 C 0.07 1.08 1.58 -67.71 -0.11 0.97 16 4 H 0.08 1.22 6.70 -51.93 -0.35 0.87 16 5 N -0.83 -12.87 5.44 -4.67 -0.03 -12.90 16 6 C 0.15 2.51 1.98 -68.87 -0.14 2.37 16 7 H 0.08 1.43 7.62 -51.93 -0.40 1.04 16 8 C -0.09 -1.33 4.63 -106.25 -0.49 -1.82 16 9 C -0.12 -1.63 8.04 -41.21 -0.33 -1.96 16 10 C -0.22 -2.73 11.23 29.04 0.33 -2.40 16 11 S 0.05 0.67 23.34 -107.50 -2.51 -1.83 16 12 C -0.18 -2.77 9.63 29.04 0.28 -2.49 16 13 N -0.52 -10.95 4.22 -237.73 -1.00 -11.95 16 14 C 0.03 0.54 7.16 60.06 0.43 0.97 16 15 C 0.19 4.71 4.24 -4.98 -0.02 4.69 16 16 C -0.50 -14.14 8.59 -34.45 -0.30 -14.44 16 17 H 0.06 1.60 7.10 -52.48 -0.37 1.23 16 18 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 20 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.53 6.87 -51.93 -0.36 0.17 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.87 5.60 -51.93 -0.29 0.58 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.33 4.45 7.55 -39.29 -0.30 4.15 16 30 H 0.34 5.54 8.67 -39.29 -0.34 5.20 16 31 H 0.13 1.60 7.76 -52.49 -0.41 1.19 16 32 H 0.16 1.50 8.06 -52.48 -0.42 1.08 16 33 H 0.18 2.82 5.40 -52.49 -0.28 2.54 16 34 H 0.04 0.85 6.07 -51.93 -0.32 0.54 16 35 H 0.06 1.29 7.04 -51.93 -0.37 0.92 16 36 H 0.04 0.63 5.03 -51.93 -0.26 0.37 16 37 H 0.04 0.98 5.69 -51.93 -0.30 0.68 16 38 H 0.01 0.41 7.79 -51.93 -0.40 0.00 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 LS Contribution 310.30 15.07 4.68 4.68 Total: -1.00 -29.60 310.30 -8.93 -38.53 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -5.56 Total: 8.46 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -0.23 Total: -15.99 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.29 Total: -50.92 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -2.51 Total: -1.83 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.60 -8.93 -38.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043116084.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.012 kcal (2) G-P(sol) polarization free energy of solvation -29.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds