Wall clock time and date at job start Mon Mar 30 2020 06:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47381 * 2 1 4 4 H 1.09003 * 109.47235 * 304.99569 * 3 2 1 5 5 N 1.46902 * 109.47349 * 64.99437 * 3 2 1 6 6 C 1.53002 * 109.47456 * 184.99856 * 3 2 1 7 7 H 1.09004 * 109.46632 * 304.50680 * 6 3 2 8 8 C 1.50694 * 109.46880 * 64.50151 * 6 3 2 9 9 C 1.38426 * 122.54078 * 275.26066 * 8 6 3 10 10 C 1.33390 * 114.91990 * 179.76541 * 9 8 6 11 11 S 1.75889 * 109.59293 * 0.47879 * 10 9 8 12 12 C 1.33391 * 122.53697 * 95.55394 * 8 6 3 13 13 N 1.46899 * 109.47532 * 184.50444 * 6 3 2 14 14 C 1.46900 * 110.99727 * 321.89814 * 13 6 3 15 15 C 1.46905 * 111.00020 * 85.84606 * 13 6 3 16 16 C 1.50693 * 109.47270 * 170.00239 * 15 13 6 17 17 H 1.08005 * 120.00042 * 0.02562 * 16 15 13 18 18 C 1.37872 * 120.00055 * 179.97438 * 16 15 13 19 19 N 1.31509 * 120.00247 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99743 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46941 * 60.00658 * 20 18 16 22 22 H 1.48507 * 109.47038 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47471 * 300.00111 * 20 18 16 24 24 H 1.08997 * 109.46751 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47182 * 300.00552 * 1 2 3 26 26 H 1.09001 * 109.46350 * 60.00581 * 1 2 3 27 27 H 1.08996 * 109.47182 * 239.99448 * 2 1 3 28 28 H 1.09006 * 109.46886 * 119.99887 * 2 1 3 29 29 H 1.00897 * 111.00301 * 296.05159 * 5 3 2 30 30 H 1.00901 * 110.99829 * 60.00202 * 5 3 2 31 31 H 1.07997 * 122.54163 * 359.97438 * 9 8 6 32 32 H 1.08003 * 125.20546 * 180.20884 * 10 9 8 33 33 H 1.07998 * 125.20340 * 359.97438 * 12 8 6 34 34 H 1.09001 * 109.47409 * 70.13152 * 14 13 6 35 35 H 1.09002 * 109.46880 * 190.13505 * 14 13 6 36 36 H 1.09006 * 109.46975 * 310.13112 * 14 13 6 37 37 H 1.09001 * 109.47066 * 290.00269 * 15 13 6 38 38 H 1.08999 * 109.46689 * 49.99633 * 15 13 6 39 39 H 0.96999 * 120.00271 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8419 5 7 1.6514 2.0993 1.2552 6 6 3.5649 1.4443 -0.1257 7 1 3.9958 0.8381 0.6712 8 6 3.9594 0.8708 -1.4622 9 6 4.0910 -0.4901 -1.6790 10 6 4.4419 -0.8302 -2.9201 11 16 4.6393 0.6201 -3.8956 12 6 4.2138 1.6363 -2.5245 13 7 4.0636 2.8218 -0.0175 14 6 3.1618 3.7628 -0.6950 15 6 4.2611 3.2013 1.3879 16 6 4.9972 4.5145 1.4550 17 1 5.2888 5.0172 0.5446 18 6 5.2975 5.0748 2.6784 19 7 4.9421 4.4629 3.7869 20 14 6.2106 6.7024 2.7614 21 1 5.4168 7.7509 2.0718 22 1 6.4102 7.0861 4.1821 23 1 7.5311 6.5637 2.0965 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 0.6477 2.1684 1.3314 30 1 2.0422 1.6180 2.0512 31 1 3.9191 -1.2212 -0.9029 32 1 4.5873 -1.8412 -3.2712 33 1 4.1655 2.7151 -2.5404 34 1 2.2328 3.8459 -0.1310 35 1 3.6379 4.7414 -0.7573 36 1 2.9456 3.3994 -1.6997 37 1 3.2920 3.3026 1.8766 38 1 4.8442 2.4316 1.8935 39 1 5.1537 4.8569 4.6476 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043116084.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:30 Heat of formation + Delta-G solvation = 28.959615 kcal Electronic energy + Delta-G solvation = -19224.942417 eV Core-core repulsion = 16486.821481 eV Total energy + Delta-G solvation = -2738.120936 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.75522 -37.67162 -36.20867 -34.42960 -31.50694 -31.05729 -29.05083 -28.80190 -26.52199 -24.64651 -23.92078 -22.09501 -20.84226 -19.59419 -18.66899 -18.19986 -16.90885 -16.63185 -16.30171 -16.13439 -15.29788 -15.15910 -14.96872 -14.46133 -14.24659 -13.85201 -13.57873 -13.40922 -13.37895 -13.13025 -12.88280 -12.70298 -12.45863 -12.32173 -12.19779 -12.08078 -11.92512 -11.71399 -11.68777 -11.45734 -11.05247 -10.48355 -9.65897 -9.55089 -9.14553 -8.47458 -8.06256 -6.13794 0.24094 0.89481 1.19038 1.42051 1.44642 1.51949 1.88793 2.46557 3.23982 3.51360 3.67813 3.90544 4.14940 4.21580 4.28502 4.35297 4.46406 4.64731 4.66757 4.74100 4.78036 4.86647 4.95998 5.08707 5.11101 5.21875 5.26484 5.33481 5.35661 5.51257 5.57017 5.69549 5.75441 5.87891 6.23510 6.35191 6.56083 6.65450 6.88882 7.05852 7.52964 9.01673 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.018827 B = 0.006067 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.898887 B = 4614.136045 C = 5630.688224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.154 4.154 3 C 0.084 3.916 4 H 0.075 0.925 5 N -0.842 5.842 6 C 0.146 3.854 7 H 0.058 0.942 8 C -0.092 4.092 9 C -0.137 4.137 10 C -0.208 4.208 11 S 0.086 5.914 12 C -0.208 4.208 13 N -0.533 5.533 14 C 0.039 3.961 15 C 0.204 3.796 16 C -0.518 4.518 17 H 0.050 0.950 18 C 0.004 3.996 19 N -0.930 5.930 20 Si 0.957 3.043 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.275 1.275 24 H 0.065 0.935 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.343 0.657 30 H 0.338 0.662 31 H 0.149 0.851 32 H 0.190 0.810 33 H 0.161 0.839 34 H 0.038 0.962 35 H 0.039 0.961 36 H 0.066 0.934 37 H 0.028 0.972 38 H -0.020 1.020 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.343 -11.651 -12.470 18.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.194 4.194 3 C -0.029 4.029 4 H 0.093 0.907 5 N -0.373 5.373 6 C 0.033 3.967 7 H 0.076 0.924 8 C -0.105 4.105 9 C -0.168 4.168 10 C -0.343 4.343 11 S 0.349 5.651 12 C -0.343 4.343 13 N -0.255 5.255 14 C -0.110 4.110 15 C 0.078 3.922 16 C -0.557 4.557 17 H 0.068 0.932 18 C -0.194 4.194 19 N -0.571 5.571 20 Si 0.783 3.217 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.200 1.200 24 H 0.084 0.916 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.158 0.842 30 H 0.151 0.849 31 H 0.166 0.834 32 H 0.207 0.793 33 H 0.179 0.821 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.046 0.954 38 H -0.002 1.002 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.072 -10.675 -14.319 18.864 hybrid contribution -0.879 -0.202 2.633 2.784 sum -6.951 -10.877 -11.686 17.412 Atomic orbital electron populations 1.21731 0.94792 1.02229 1.01663 1.22367 0.97012 0.97339 1.02668 1.21954 0.94649 0.93337 0.92952 0.90666 1.58981 1.15993 1.58417 1.03861 1.20284 0.92693 0.90850 0.92827 0.92399 1.18906 1.02830 0.93392 0.95370 1.20136 1.03680 0.95029 0.97953 1.25816 1.08815 1.02683 0.96965 1.83999 1.69073 0.97645 1.14356 1.25773 1.08652 1.03753 0.96147 1.62184 1.45742 1.00552 1.17018 1.22314 0.95469 0.95752 0.97427 1.19579 0.95807 0.93045 0.83787 1.21538 1.35732 1.06550 0.91868 0.93219 1.25724 0.97232 1.00991 0.95419 1.70060 1.48791 1.40608 0.97678 0.85630 0.79103 0.80144 0.76826 1.19627 1.20906 1.20024 0.91635 0.92910 0.92715 0.90464 0.92408 0.84247 0.84916 0.83356 0.79306 0.82148 0.94377 0.94244 0.91583 0.95382 1.00176 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.68 71.98 0.70 -2.10 16 2 C -0.15 -3.51 5.26 30.59 0.16 -3.35 16 3 C 0.08 2.45 1.58 44.91 0.07 2.52 16 4 H 0.08 2.26 6.70 -2.39 -0.02 2.25 16 5 N -0.84 -26.71 5.44 -168.68 -0.92 -27.62 16 6 C 0.15 5.11 1.98 44.17 0.09 5.20 16 7 H 0.06 2.23 7.62 -2.39 -0.02 2.21 16 8 C -0.09 -2.80 4.63 -20.92 -0.10 -2.90 16 9 C -0.14 -3.42 8.04 21.22 0.17 -3.25 16 10 C -0.21 -4.42 11.23 66.72 0.75 -3.67 16 11 S 0.09 2.03 23.34 -56.49 -1.32 0.71 16 12 C -0.21 -6.27 9.63 66.72 0.64 -5.63 16 13 N -0.53 -23.01 4.22 -906.03 -3.82 -26.83 16 14 C 0.04 1.53 7.16 127.69 0.91 2.44 16 15 C 0.20 10.80 4.24 85.55 0.36 11.16 16 16 C -0.52 -30.14 8.59 25.60 0.22 -29.92 16 17 H 0.05 2.89 7.10 -2.91 -0.02 2.87 16 18 C 0.00 0.22 5.46 84.65 0.46 0.68 16 19 N -0.93 -56.49 13.29 21.44 0.28 -56.20 16 20 Si 0.96 45.77 29.54 68.60 2.03 47.80 16 21 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 22 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 23 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 24 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.05 0.99 6.87 -2.39 -0.02 0.98 16 26 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.08 1.71 5.60 -2.39 -0.01 1.69 16 28 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.34 9.19 7.55 -89.70 -0.68 8.51 16 30 H 0.34 11.30 8.67 -89.69 -0.78 10.52 16 31 H 0.15 3.22 7.76 -2.91 -0.02 3.20 16 32 H 0.19 2.76 8.06 -2.91 -0.02 2.73 16 33 H 0.16 5.19 5.40 -2.91 -0.02 5.18 16 34 H 0.04 1.53 6.07 -2.39 -0.01 1.51 16 35 H 0.04 1.70 7.04 -2.39 -0.02 1.68 16 36 H 0.07 2.21 5.03 -2.38 -0.01 2.20 16 37 H 0.03 1.54 5.69 -2.39 -0.01 1.53 16 38 H -0.02 -1.17 7.79 -2.39 -0.02 -1.19 16 39 H 0.26 14.98 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -64.28 310.30 0.31 -63.97 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: -0.38 Total: 26.99 kcal Atomic # 6 Polarization: -33.25 SS G_CDS: 4.44 Total: -28.81 kcal Atomic # 7 Polarization: -106.20 SS G_CDS: -4.45 Total: -110.65 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -1.32 Total: 0.71 kcal Total: -64.28 0.31 -63.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043116084.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.930 kcal (2) G-P(sol) polarization free energy of solvation -64.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds