Wall clock time and date at job start Mon Mar 30 2020 06:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.47499 * 2 1 4 4 H 1.09002 * 109.46560 * 55.00083 * 3 2 1 5 5 N 1.46896 * 109.47106 * 295.00528 * 3 2 1 6 6 C 1.52993 * 109.47109 * 174.99860 * 3 2 1 7 7 H 1.09001 * 109.47207 * 61.99607 * 6 3 2 8 8 C 1.50697 * 109.47456 * 301.98815 * 6 3 2 9 9 C 1.38430 * 122.53793 * 86.33066 * 8 6 3 10 10 C 1.33387 * 114.92251 * 179.97438 * 9 8 6 11 11 S 1.75885 * 109.59381 * 359.97438 * 10 9 8 12 12 C 1.33392 * 122.54459 * 266.03666 * 8 6 3 13 13 N 1.46903 * 109.46922 * 181.98905 * 6 3 2 14 14 C 1.46903 * 110.99687 * 37.16763 * 13 6 3 15 15 C 1.46894 * 111.00153 * 273.21195 * 13 6 3 16 16 C 1.50703 * 109.47116 * 196.63213 * 15 13 6 17 17 H 1.08000 * 120.00027 * 0.02562 * 16 15 13 18 18 C 1.37881 * 119.99803 * 179.97438 * 16 15 13 19 19 N 1.31508 * 120.00470 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99610 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47563 * 89.99948 * 20 18 16 22 22 H 1.48504 * 109.46874 * 210.00229 * 20 18 16 23 23 H 1.48498 * 109.46927 * 329.99454 * 20 18 16 24 24 H 1.08998 * 109.46698 * 59.99583 * 1 2 3 25 25 H 1.08998 * 109.46951 * 299.99833 * 1 2 3 26 26 H 1.08992 * 109.47082 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47438 * 120.00460 * 2 1 3 28 28 H 1.09005 * 109.47580 * 240.00328 * 2 1 3 29 29 H 1.00897 * 111.00339 * 167.04136 * 5 3 2 30 30 H 1.00906 * 110.99611 * 290.99259 * 5 3 2 31 31 H 1.08002 * 122.53572 * 359.97438 * 9 8 6 32 32 H 1.08001 * 125.20516 * 179.97438 * 10 9 8 33 33 H 1.07995 * 125.19869 * 0.02820 * 12 8 6 34 34 H 1.08996 * 109.47517 * 52.26620 * 14 13 6 35 35 H 1.08999 * 109.47117 * 172.26579 * 14 13 6 36 36 H 1.09000 * 109.46712 * 292.25949 * 14 13 6 37 37 H 1.09003 * 109.47370 * 316.62941 * 15 13 6 38 38 H 1.08999 * 109.47447 * 76.63062 * 15 13 6 39 39 H 0.97001 * 120.00874 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6055 1.9815 0.8419 5 7 1.6514 2.0994 -1.2551 6 6 3.5648 1.4443 0.1258 7 1 4.0009 0.9360 -0.7342 8 6 3.9656 0.7276 1.3894 9 6 4.1411 -0.6445 1.4434 10 6 4.4965 -1.1191 2.6382 11 16 4.6280 0.2082 3.7848 12 6 4.1836 1.3677 2.5391 13 7 4.0506 2.8298 0.1737 14 6 3.1291 3.6847 0.9339 15 6 4.2650 3.3596 -1.1795 16 6 5.1279 4.5930 -1.1053 17 1 5.4819 4.9475 -0.1485 18 6 5.4661 5.2681 -2.2589 19 7 5.0362 4.8356 -3.4241 20 14 6.5363 6.7965 -2.1669 21 1 7.9655 6.4072 -2.2715 22 1 6.1894 7.7116 -3.2838 23 1 6.3044 7.4858 -0.8722 24 1 -0.3632 0.5139 -0.8899 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.7857 3.0977 -1.1975 30 1 2.1563 1.7111 -2.0378 31 1 4.0008 -1.2824 0.5832 32 1 4.6762 -2.1592 2.8668 33 1 4.0986 2.4346 2.6834 34 1 2.9353 3.2345 1.9075 35 1 3.5765 4.6691 1.0714 36 1 2.1917 3.7850 0.3868 37 1 4.7610 2.6055 -1.7907 38 1 3.3041 3.6149 -1.6263 39 1 5.2745 5.3104 -4.2357 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043116087.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:34 Heat of formation + Delta-G solvation = 47.473990 kcal Electronic energy + Delta-G solvation = -19244.398326 eV Core-core repulsion = 16507.080233 eV Total energy + Delta-G solvation = -2737.318093 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.66360 -36.58592 -34.53369 -32.55210 -30.58679 -29.79163 -27.72131 -27.28773 -24.96579 -23.41463 -22.58869 -20.64916 -19.64875 -18.42645 -17.42852 -16.60326 -15.87835 -15.04180 -14.88596 -14.77169 -14.22669 -13.80168 -13.30461 -13.19178 -12.77148 -12.57918 -12.35052 -12.18829 -11.96196 -11.86786 -11.41272 -11.15362 -11.07614 -10.95283 -10.76942 -10.57561 -10.56712 -10.45256 -10.27564 -9.87828 -9.31955 -8.81266 -8.48572 -8.44469 -8.03368 -7.07256 -6.07786 -4.09285 1.30271 1.92640 2.24708 3.00198 3.29199 3.35570 3.38780 4.37366 4.77724 4.93797 5.13603 5.18299 5.28124 5.36447 5.46436 5.51613 5.61522 5.76867 5.82316 5.87730 5.97414 6.08680 6.14785 6.18229 6.22258 6.31191 6.46581 6.57400 6.63354 6.65851 6.85530 7.09913 7.13834 7.58949 7.74839 7.86568 8.00145 8.09303 8.45592 8.97652 9.55287 11.02018 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.018797 B = 0.006080 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.234680 B = 4604.197454 C = 5614.727658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C 0.072 3.928 4 H 0.080 0.920 5 N -0.844 5.844 6 C 0.105 3.895 7 H 0.082 0.918 8 C -0.080 4.080 9 C -0.120 4.120 10 C -0.221 4.221 11 S 0.053 5.947 12 C -0.185 4.185 13 N -0.531 5.531 14 C 0.023 3.977 15 C 0.188 3.812 16 C -0.507 4.507 17 H 0.062 0.938 18 C 0.056 3.944 19 N -0.898 5.898 20 Si 0.898 3.102 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.065 0.935 25 H 0.044 0.956 26 H 0.041 0.959 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.349 0.651 30 H 0.341 0.659 31 H 0.136 0.864 32 H 0.158 0.842 33 H 0.172 0.828 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.022 0.978 37 H 0.026 0.974 38 H 0.001 0.999 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.365 -10.339 10.022 15.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C -0.042 4.042 4 H 0.098 0.902 5 N -0.377 5.377 6 C -0.009 4.009 7 H 0.100 0.900 8 C -0.093 4.093 9 C -0.152 4.152 10 C -0.356 4.356 11 S 0.316 5.684 12 C -0.320 4.320 13 N -0.253 5.253 14 C -0.126 4.126 15 C 0.063 3.937 16 C -0.545 4.545 17 H 0.080 0.920 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.726 3.274 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 H 0.084 0.916 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.167 0.833 30 H 0.154 0.846 31 H 0.154 0.846 32 H 0.175 0.825 33 H 0.189 0.811 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.040 0.960 37 H 0.044 0.956 38 H 0.019 0.981 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.264 -10.433 11.753 16.574 hybrid contribution 0.662 0.994 -2.051 2.373 sum -4.602 -9.439 9.702 14.297 Atomic orbital electron populations 1.21635 0.95818 1.00173 1.02177 1.21607 0.96197 0.95941 1.01514 1.22067 0.92996 0.95579 0.93548 0.90226 1.59164 1.64178 1.09989 1.04329 1.21242 0.94224 0.91547 0.93863 0.90032 1.18898 1.01776 0.92717 0.95864 1.20072 1.02258 0.94920 0.97930 1.25399 1.11073 1.02161 0.96962 1.84110 1.70128 0.98791 1.15363 1.25727 1.08086 1.03098 0.95120 1.62233 1.44291 0.99082 1.19732 1.22533 0.94676 0.98587 0.96761 1.19974 0.95841 0.95427 0.82420 1.21130 1.30778 1.09435 0.93190 0.91974 1.24968 0.96345 0.97880 0.95330 1.69930 1.45683 1.40371 0.97729 0.86503 0.80694 0.82669 0.77568 1.20692 1.21327 1.19908 0.91626 0.93643 0.93990 0.91504 0.92494 0.83289 0.84647 0.84649 0.82462 0.81070 0.92934 0.90989 0.95978 0.95573 0.98102 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.80 37.16 0.36 -1.38 16 2 C -0.11 -1.50 5.14 -26.73 -0.14 -1.64 16 3 C 0.07 1.08 1.74 -67.71 -0.12 0.97 16 4 H 0.08 1.26 6.28 -51.93 -0.33 0.93 16 5 N -0.84 -13.75 7.89 -4.67 -0.04 -13.79 16 6 C 0.11 1.77 1.92 -68.87 -0.13 1.64 16 7 H 0.08 1.48 7.50 -51.93 -0.39 1.09 16 8 C -0.08 -1.23 4.42 -106.25 -0.47 -1.70 16 9 C -0.12 -1.62 7.89 -41.21 -0.33 -1.95 16 10 C -0.22 -2.70 11.23 29.04 0.33 -2.37 16 11 S 0.05 0.68 23.34 -107.50 -2.51 -1.82 16 12 C -0.19 -2.81 9.72 29.04 0.28 -2.53 16 13 N -0.53 -10.53 4.17 -237.74 -0.99 -11.53 16 14 C 0.02 0.41 7.30 60.07 0.44 0.85 16 15 C 0.19 4.52 4.06 -4.98 -0.02 4.50 16 16 C -0.51 -13.71 8.66 -34.44 -0.30 -14.01 16 17 H 0.06 1.69 7.54 -52.49 -0.40 1.30 16 18 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -25.75 13.29 55.43 0.74 -25.02 16 20 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 H 0.06 0.88 7.75 -51.93 -0.40 0.48 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.86 5.65 -51.93 -0.29 0.56 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.35 6.34 4.78 -39.29 -0.19 6.15 16 30 H 0.34 5.75 8.72 -39.29 -0.34 5.41 16 31 H 0.14 1.63 7.99 -52.49 -0.42 1.21 16 32 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.17 2.66 5.35 -52.49 -0.28 2.38 16 34 H 0.05 0.82 5.04 -51.93 -0.26 0.56 16 35 H 0.07 1.39 7.43 -51.93 -0.39 1.00 16 36 H 0.02 0.39 5.12 -51.93 -0.27 0.12 16 37 H 0.03 0.69 7.61 -51.93 -0.40 0.30 16 38 H 0.00 0.04 5.29 -51.93 -0.27 -0.24 16 39 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 309.76 15.07 4.67 4.67 Total: -1.00 -27.54 309.76 -8.79 -36.33 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -5.45 Total: 10.99 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: -0.19 Total: -16.17 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: -0.29 Total: -50.33 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 0.68 SS G_CDS: -2.51 Total: -1.82 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.54 -8.79 -36.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043116087.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.808 kcal (2) G-P(sol) polarization free energy of solvation -27.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds