Wall clock time and date at job start Mon Mar 30 2020 06:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.47499 * 2 1 4 4 H 1.09002 * 109.46560 * 55.00083 * 3 2 1 5 5 N 1.46896 * 109.47106 * 295.00528 * 3 2 1 6 6 C 1.52993 * 109.47109 * 174.99860 * 3 2 1 7 7 H 1.09001 * 109.47207 * 61.99607 * 6 3 2 8 8 C 1.50697 * 109.47456 * 301.98815 * 6 3 2 9 9 C 1.38430 * 122.53793 * 86.33066 * 8 6 3 10 10 C 1.33387 * 114.92251 * 179.97438 * 9 8 6 11 11 S 1.75885 * 109.59381 * 359.97438 * 10 9 8 12 12 C 1.33392 * 122.54459 * 266.03666 * 8 6 3 13 13 N 1.46903 * 109.46922 * 181.98905 * 6 3 2 14 14 C 1.46903 * 110.99687 * 37.16763 * 13 6 3 15 15 C 1.46894 * 111.00153 * 273.21195 * 13 6 3 16 16 C 1.50703 * 109.47116 * 196.63213 * 15 13 6 17 17 H 1.08000 * 120.00027 * 0.02562 * 16 15 13 18 18 C 1.37881 * 119.99803 * 179.97438 * 16 15 13 19 19 N 1.31508 * 120.00470 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99610 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47563 * 89.99948 * 20 18 16 22 22 H 1.48504 * 109.46874 * 210.00229 * 20 18 16 23 23 H 1.48498 * 109.46927 * 329.99454 * 20 18 16 24 24 H 1.08998 * 109.46698 * 59.99583 * 1 2 3 25 25 H 1.08998 * 109.46951 * 299.99833 * 1 2 3 26 26 H 1.08992 * 109.47082 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47438 * 120.00460 * 2 1 3 28 28 H 1.09005 * 109.47580 * 240.00328 * 2 1 3 29 29 H 1.00897 * 111.00339 * 167.04136 * 5 3 2 30 30 H 1.00906 * 110.99611 * 290.99259 * 5 3 2 31 31 H 1.08002 * 122.53572 * 359.97438 * 9 8 6 32 32 H 1.08001 * 125.20516 * 179.97438 * 10 9 8 33 33 H 1.07995 * 125.19869 * 0.02820 * 12 8 6 34 34 H 1.08996 * 109.47517 * 52.26620 * 14 13 6 35 35 H 1.08999 * 109.47117 * 172.26579 * 14 13 6 36 36 H 1.09000 * 109.46712 * 292.25949 * 14 13 6 37 37 H 1.09003 * 109.47370 * 316.62941 * 15 13 6 38 38 H 1.08999 * 109.47447 * 76.63062 * 15 13 6 39 39 H 0.97001 * 120.00874 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6055 1.9815 0.8419 5 7 1.6514 2.0994 -1.2551 6 6 3.5648 1.4443 0.1258 7 1 4.0009 0.9360 -0.7342 8 6 3.9656 0.7276 1.3894 9 6 4.1411 -0.6445 1.4434 10 6 4.4965 -1.1191 2.6382 11 16 4.6280 0.2082 3.7848 12 6 4.1836 1.3677 2.5391 13 7 4.0506 2.8298 0.1737 14 6 3.1291 3.6847 0.9339 15 6 4.2650 3.3596 -1.1795 16 6 5.1279 4.5930 -1.1053 17 1 5.4819 4.9475 -0.1485 18 6 5.4661 5.2681 -2.2589 19 7 5.0362 4.8356 -3.4241 20 14 6.5363 6.7965 -2.1669 21 1 7.9655 6.4072 -2.2715 22 1 6.1894 7.7116 -3.2838 23 1 6.3044 7.4858 -0.8722 24 1 -0.3632 0.5139 -0.8899 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.7857 3.0977 -1.1975 30 1 2.1563 1.7111 -2.0378 31 1 4.0008 -1.2824 0.5832 32 1 4.6762 -2.1592 2.8668 33 1 4.0986 2.4346 2.6834 34 1 2.9353 3.2345 1.9075 35 1 3.5765 4.6691 1.0714 36 1 2.1917 3.7850 0.3868 37 1 4.7610 2.6055 -1.7907 38 1 3.3041 3.6149 -1.6263 39 1 5.2745 5.3104 -4.2357 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043116087.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:33 Heat of formation + Delta-G solvation = 29.827273 kcal Electronic energy + Delta-G solvation = -19245.163545 eV Core-core repulsion = 16507.080233 eV Total energy + Delta-G solvation = -2738.083312 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.98791 -37.82251 -35.98034 -34.50810 -31.79503 -31.12147 -29.08207 -28.96611 -26.58288 -24.59837 -24.04516 -22.14060 -20.92065 -19.59721 -18.69067 -18.39760 -17.29142 -16.66812 -16.38475 -16.17791 -15.56498 -15.25083 -14.62027 -14.51736 -14.15794 -13.96403 -13.56014 -13.53600 -13.37718 -13.10012 -12.96106 -12.77631 -12.61553 -12.38661 -12.25826 -12.20661 -11.89264 -11.67561 -11.62350 -11.50627 -11.20460 -10.59493 -10.17176 -9.53880 -9.15880 -8.62668 -8.17294 -6.27728 0.23477 0.89004 1.18489 1.40027 1.40719 1.51240 1.88163 2.39715 3.12848 3.29059 3.61134 3.86580 4.08743 4.21429 4.24602 4.38553 4.43927 4.53331 4.59048 4.68293 4.77017 4.84338 4.89832 5.06851 5.07123 5.15543 5.17900 5.21356 5.29545 5.38794 5.54297 5.54711 5.65220 5.72363 6.08332 6.20518 6.36640 6.40398 6.64285 6.87054 7.41307 8.89992 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.018797 B = 0.006080 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.234680 B = 4604.197454 C = 5614.727658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.107 4.107 3 C 0.079 3.921 4 H 0.077 0.923 5 N -0.840 5.840 6 C 0.109 3.891 7 H 0.063 0.937 8 C -0.088 4.088 9 C -0.137 4.137 10 C -0.207 4.207 11 S 0.087 5.913 12 C -0.211 4.211 13 N -0.539 5.539 14 C 0.030 3.970 15 C 0.206 3.794 16 C -0.522 4.522 17 H 0.055 0.945 18 C 0.007 3.993 19 N -0.928 5.928 20 Si 0.961 3.039 21 H -0.278 1.278 22 H -0.282 1.282 23 H -0.267 1.267 24 H 0.052 0.948 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.337 0.663 30 H 0.336 0.664 31 H 0.148 0.852 32 H 0.189 0.811 33 H 0.162 0.838 34 H 0.078 0.922 35 H 0.054 0.946 36 H 0.023 0.977 37 H -0.005 1.005 38 H -0.006 1.006 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.380 -11.432 11.599 17.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.146 4.146 3 C -0.034 4.034 4 H 0.095 0.905 5 N -0.370 5.370 6 C -0.004 4.004 7 H 0.081 0.919 8 C -0.102 4.102 9 C -0.168 4.168 10 C -0.342 4.342 11 S 0.350 5.650 12 C -0.346 4.346 13 N -0.262 5.262 14 C -0.119 4.119 15 C 0.080 3.920 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.192 4.192 19 N -0.569 5.569 20 Si 0.787 3.213 21 H -0.204 1.204 22 H -0.208 1.208 23 H -0.192 1.192 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.153 0.847 30 H 0.148 0.852 31 H 0.166 0.834 32 H 0.207 0.793 33 H 0.179 0.821 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.041 0.959 37 H 0.013 0.987 38 H 0.012 0.988 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.288 -11.545 13.356 18.429 hybrid contribution 0.676 1.263 -2.469 2.854 sum -4.612 -10.281 10.888 15.669 Atomic orbital electron populations 1.21592 0.94964 1.01229 1.01592 1.21558 0.96809 0.94203 1.02010 1.22048 0.91758 0.96908 0.92711 0.90478 1.59209 1.63935 1.09092 1.04793 1.21189 0.95236 0.89559 0.94431 0.91889 1.18855 1.02622 0.93740 0.94956 1.20140 1.03462 0.94070 0.99140 1.25813 1.08820 1.03499 0.96093 1.84003 1.69112 0.97850 1.14049 1.25739 1.09116 1.03437 0.96346 1.62100 1.45907 1.00777 1.17379 1.22489 0.93998 0.97660 0.97711 1.19599 0.94598 0.93613 0.84224 1.21460 1.31139 1.10525 0.92952 0.92652 1.25766 0.97589 1.00811 0.95008 1.70040 1.46865 1.41679 0.98295 0.85503 0.78847 0.79156 0.77810 1.20366 1.20792 1.19185 0.92922 0.93492 0.92131 0.90501 0.92444 0.84670 0.85207 0.83415 0.79336 0.82071 0.90350 0.92729 0.95851 0.98700 0.98824 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.80 71.98 0.71 -2.45 16 2 C -0.11 -2.68 5.14 30.60 0.16 -2.53 16 3 C 0.08 2.38 1.74 44.92 0.08 2.45 16 4 H 0.08 2.38 6.28 -2.39 -0.01 2.36 16 5 N -0.84 -27.93 7.89 -168.68 -1.33 -29.26 16 6 C 0.11 3.72 1.92 44.17 0.09 3.80 16 7 H 0.06 2.37 7.50 -2.39 -0.02 2.35 16 8 C -0.09 -2.64 4.42 -20.92 -0.09 -2.73 16 9 C -0.14 -3.41 7.89 21.22 0.17 -3.24 16 10 C -0.21 -4.38 11.23 66.72 0.75 -3.63 16 11 S 0.09 2.00 23.34 -56.49 -1.32 0.68 16 12 C -0.21 -6.16 9.72 66.72 0.65 -5.51 16 13 N -0.54 -21.90 4.17 -906.06 -3.78 -25.68 16 14 C 0.03 1.07 7.30 127.69 0.93 2.01 16 15 C 0.21 10.26 4.06 85.56 0.35 10.61 16 16 C -0.52 -28.92 8.66 25.60 0.22 -28.69 16 17 H 0.06 3.07 7.54 -2.91 -0.02 3.05 16 18 C 0.01 0.37 5.46 84.66 0.46 0.83 16 19 N -0.93 -54.30 13.29 21.45 0.28 -54.02 16 20 Si 0.96 44.13 29.54 68.60 2.03 46.16 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 24 H 0.05 1.35 7.75 -2.39 -0.02 1.33 16 25 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.08 1.80 5.65 -2.39 -0.01 1.79 16 28 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.34 12.64 4.78 -89.70 -0.43 12.21 16 30 H 0.34 11.75 8.72 -89.69 -0.78 10.96 16 31 H 0.15 3.24 7.99 -2.91 -0.02 3.21 16 32 H 0.19 2.76 8.06 -2.91 -0.02 2.74 16 33 H 0.16 4.93 5.35 -2.91 -0.02 4.92 16 34 H 0.08 2.42 5.04 -2.39 -0.01 2.41 16 35 H 0.05 2.14 7.43 -2.39 -0.02 2.13 16 36 H 0.02 0.84 5.12 -2.39 -0.01 0.82 16 37 H -0.01 -0.28 7.61 -2.39 -0.02 -0.30 16 38 H -0.01 -0.29 5.29 -2.39 -0.01 -0.30 16 39 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -59.22 309.76 0.20 -59.02 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: -0.14 Total: 32.18 kcal Atomic # 6 Polarization: -33.54 SS G_CDS: 4.46 Total: -29.08 kcal Atomic # 7 Polarization: -104.14 SS G_CDS: -4.83 Total: -108.96 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -1.32 Total: 0.68 kcal Total: -59.22 0.20 -59.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043116087.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.848 kcal (2) G-P(sol) polarization free energy of solvation -59.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds