Wall clock time and date at job start Mon Mar 30 2020 06:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46895 * 109.46869 * 2 1 4 4 C 1.46902 * 111.00010 * 302.33836 * 3 2 1 5 5 C 1.50692 * 109.47415 * 298.74484 * 4 3 2 6 6 H 1.08002 * 119.99915 * 4.49955 * 5 4 3 7 7 C 1.37878 * 120.00453 * 184.49439 * 5 4 3 8 8 N 1.31515 * 119.99305 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00232 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47562 * 60.00132 * 9 7 5 11 11 H 1.48509 * 109.47015 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47208 * 299.99825 * 9 7 5 13 13 C 1.46896 * 111.00415 * 66.29439 * 3 2 1 14 14 H 1.09007 * 109.47057 * 324.26872 * 13 3 2 15 15 C 1.50695 * 109.47871 * 204.26796 * 13 3 2 16 16 C 1.38418 * 122.54395 * 129.20583 * 15 13 3 17 17 C 1.33395 * 114.92359 * 179.76422 * 16 15 13 18 18 S 1.75883 * 109.58840 * 0.47920 * 17 16 15 19 19 C 1.33387 * 122.53693 * 309.50079 * 15 13 3 20 20 C 1.52999 * 109.47144 * 84.26473 * 13 3 2 21 21 H 1.09003 * 109.47286 * 174.32004 * 20 13 3 22 22 C 1.53006 * 109.47430 * 294.31746 * 20 13 3 23 23 N 1.46899 * 109.47010 * 54.32127 * 20 13 3 24 24 H 1.09005 * 109.46857 * 184.93128 * 1 2 3 25 25 H 1.09007 * 109.46777 * 304.92756 * 1 2 3 26 26 H 1.08993 * 109.47529 * 64.92890 * 1 2 3 27 27 H 1.08996 * 109.46559 * 240.00026 * 2 1 3 28 28 H 1.09000 * 109.47279 * 119.99787 * 2 1 3 29 29 H 1.09002 * 109.46877 * 58.75069 * 4 3 2 30 30 H 1.09002 * 109.46859 * 178.74490 * 4 3 2 31 31 H 0.97005 * 119.99472 * 179.97438 * 8 7 5 32 32 H 1.08003 * 122.53971 * 0.02562 * 16 15 13 33 33 H 1.07993 * 125.20485 * 180.20887 * 17 16 15 34 34 H 1.08003 * 125.20413 * 359.97049 * 19 15 13 35 35 H 1.08993 * 109.47504 * 195.88020 * 22 20 13 36 36 H 1.08993 * 109.46851 * 315.88780 * 22 20 13 37 37 H 1.09001 * 109.46387 * 75.88442 * 22 20 13 38 38 H 1.00907 * 111.00144 * 184.48148 * 23 20 13 39 39 H 1.00907 * 110.99587 * 308.42862 * 23 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5034 2.1258 -1.1587 5 6 1.9831 1.4707 -2.4282 6 1 2.5477 0.5512 -2.3813 7 6 1.7011 2.0450 -3.6496 8 7 1.0139 3.1648 -3.7065 9 14 2.2951 1.2324 -5.2231 10 1 1.7156 -0.1310 -5.3256 11 1 1.8653 2.0425 -6.3913 12 1 3.7771 1.1402 -5.2037 13 6 1.6753 2.0651 1.2556 14 1 0.6991 1.7223 1.5987 15 6 1.6324 3.5538 1.0254 16 6 0.5576 4.3362 1.4107 17 6 0.6818 5.6359 1.1375 18 16 2.2213 5.9259 0.3378 19 6 2.6249 4.2165 0.4295 20 6 2.7304 1.7433 2.3159 21 1 2.5314 2.3263 3.2152 22 6 2.6765 0.2518 2.6529 23 7 4.0632 2.0808 1.7986 24 1 -0.3633 -1.0239 0.0883 25 1 -0.3633 0.5884 0.8426 26 1 -0.3634 0.4354 -0.9308 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 0.4136 2.1213 -1.1368 30 1 1.8632 3.1541 -1.1222 31 1 0.8158 3.5691 -4.5658 32 1 -0.3138 3.9261 1.8997 33 1 -0.0526 6.3935 1.3677 34 1 3.5371 3.7715 0.0602 35 1 3.2113 0.0703 3.5851 36 1 1.6376 -0.0583 2.7636 37 1 3.1425 -0.3190 1.8497 38 1 4.7836 1.8100 2.4512 39 1 4.2174 1.6597 0.8947 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043123827.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:28 Heat of formation + Delta-G solvation = 55.373420 kcal Electronic energy + Delta-G solvation = -19719.556342 eV Core-core repulsion = 16982.580794 eV Total energy + Delta-G solvation = -2736.975548 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.35411 -36.19914 -34.61648 -32.39157 -30.26001 -28.74335 -28.13210 -27.01487 -25.31530 -22.91228 -22.64009 -20.62943 -19.12830 -17.95264 -17.07353 -16.17192 -15.94953 -14.92352 -14.53102 -14.37263 -13.88810 -13.51650 -13.24891 -12.92362 -12.56551 -12.41123 -12.20501 -12.04023 -11.84057 -11.77524 -11.29243 -11.11536 -11.06726 -10.88700 -10.80189 -10.64866 -10.32943 -10.08043 -9.84683 -9.47960 -9.01564 -8.42179 -8.16908 -7.87937 -7.62611 -7.10166 -5.94542 -3.94808 1.75995 2.35776 2.67829 3.34930 3.39961 3.40238 3.42018 4.46680 4.86907 5.15490 5.29166 5.40136 5.41906 5.62778 5.66749 5.81074 5.84247 5.94236 5.96243 6.03453 6.11721 6.14223 6.29594 6.33314 6.40938 6.59953 6.67108 6.77983 6.96775 7.09546 7.21058 7.49051 7.54825 7.70145 7.86350 8.05149 8.22353 8.31553 8.65427 9.12059 9.67477 11.15493 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014702 B = 0.008805 C = 0.006542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.035685 B = 3179.379024 C = 4278.743662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.042 3.958 3 N -0.523 5.523 4 C 0.182 3.818 5 C -0.506 4.506 6 H 0.058 0.942 7 C 0.058 3.942 8 N -0.892 5.892 9 Si 0.891 3.109 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.142 3.858 14 H 0.047 0.953 15 C -0.110 4.110 16 C -0.120 4.120 17 C -0.233 4.233 18 S 0.061 5.939 19 C -0.120 4.120 20 C 0.107 3.893 21 H 0.070 0.930 22 C -0.187 4.187 23 N -0.835 5.835 24 H 0.042 0.958 25 H 0.043 0.957 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.066 0.934 29 H -0.012 1.012 30 H 0.055 0.945 31 H 0.259 0.741 32 H 0.126 0.874 33 H 0.153 0.847 34 H 0.172 0.828 35 H 0.044 0.956 36 H 0.055 0.945 37 H 0.068 0.932 38 H 0.325 0.675 39 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.620 -0.635 12.040 12.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.086 4.086 3 N -0.247 5.247 4 C 0.057 3.943 5 C -0.545 4.545 6 H 0.076 0.924 7 C -0.144 4.144 8 N -0.532 5.532 9 Si 0.719 3.281 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.203 1.203 13 C 0.030 3.970 14 H 0.065 0.935 15 C -0.121 4.121 16 C -0.152 4.152 17 C -0.368 4.368 18 S 0.324 5.676 19 C -0.256 4.256 20 C -0.006 4.006 21 H 0.088 0.912 22 C -0.246 4.246 23 N -0.366 5.366 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.006 0.994 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.144 0.856 33 H 0.170 0.830 34 H 0.190 0.810 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.136 0.864 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.530 1.562 11.285 11.670 hybrid contribution -1.415 -2.668 -0.423 3.049 sum 1.115 -1.106 10.862 10.975 Atomic orbital electron populations 1.22354 0.99519 1.00254 1.02337 1.22415 0.92386 0.91839 1.01925 1.62324 1.58971 1.01572 1.01845 1.20070 0.93168 0.95441 0.85631 1.21138 1.34170 1.08801 0.90378 0.92403 1.24933 0.95540 0.95025 0.98889 1.69965 1.39606 1.18468 1.25147 0.86689 0.79160 0.79196 0.83061 1.20556 1.21495 1.20327 1.20387 0.95618 0.88849 0.92121 0.93487 1.18515 0.94160 0.96083 1.03305 1.19975 0.99313 0.92916 1.02984 1.25223 1.01874 0.99967 1.09700 1.84042 1.14390 1.09819 1.59394 1.25435 1.03733 0.93575 1.02901 1.21309 0.90530 0.92514 0.96200 0.91233 1.22879 1.01805 0.99114 1.00797 1.58843 1.02107 1.67505 1.08154 0.93855 0.93848 0.91176 0.90387 0.91573 0.99382 0.92723 0.93085 0.85580 0.82976 0.81022 0.93717 0.92643 0.91305 0.86389 0.82586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.33 9.18 37.16 0.34 -2.99 16 2 C 0.04 0.77 5.42 -3.82 -0.02 0.75 16 3 N -0.52 -10.24 3.42 -229.48 -0.79 -11.03 16 4 C 0.18 4.49 3.56 -4.98 -0.02 4.47 16 5 C -0.51 -13.70 8.61 -34.44 -0.30 -14.00 16 6 H 0.06 1.55 6.59 -52.49 -0.35 1.20 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 9 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.14 2.45 1.87 -68.87 -0.13 2.32 16 14 H 0.05 0.82 5.60 -51.92 -0.29 0.53 16 15 C -0.11 -2.02 3.43 -106.25 -0.36 -2.38 16 16 C -0.12 -2.08 9.92 -41.21 -0.41 -2.49 16 17 C -0.23 -3.84 11.23 29.04 0.33 -3.51 16 18 S 0.06 1.06 23.34 -107.50 -2.51 -1.45 16 19 C -0.12 -2.29 7.34 29.04 0.21 -2.08 16 20 C 0.11 1.54 3.19 -67.71 -0.22 1.33 16 21 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 22 C -0.19 -2.34 7.81 37.16 0.29 -2.05 16 23 N -0.84 -11.87 7.56 -4.66 -0.04 -11.91 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.04 0.74 6.10 -51.93 -0.32 0.42 16 26 H 0.07 1.49 6.62 -51.93 -0.34 1.15 16 27 H 0.08 1.56 6.54 -51.93 -0.34 1.22 16 28 H 0.07 1.02 3.87 -51.93 -0.20 0.82 16 29 H -0.01 -0.32 6.30 -51.93 -0.33 -0.64 16 30 H 0.05 1.45 4.59 -51.93 -0.24 1.21 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.13 1.94 8.06 -52.48 -0.42 1.52 16 33 H 0.15 2.09 8.06 -52.49 -0.42 1.67 16 34 H 0.17 3.44 7.31 -52.48 -0.38 3.05 16 35 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.69 7.54 -51.93 -0.39 0.30 16 37 H 0.07 0.91 6.37 -51.93 -0.33 0.58 16 38 H 0.32 3.86 8.99 -39.29 -0.35 3.51 16 39 H 0.36 5.68 7.97 -39.29 -0.31 5.36 16 LS Contribution 308.74 15.07 4.65 4.65 Total: -1.00 -28.47 308.74 -8.77 -37.24 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -5.42 Total: 10.65 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -0.38 Total: -19.13 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -0.08 Total: -48.51 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.51 Total: -1.45 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.47 -8.77 -37.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043123827.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.615 kcal (2) G-P(sol) polarization free energy of solvation -28.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds