Wall clock time and date at job start Mon Mar 30 2020 06:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46895 * 109.46869 * 2 1 4 4 C 1.46902 * 111.00010 * 302.33836 * 3 2 1 5 5 C 1.50692 * 109.47415 * 298.74484 * 4 3 2 6 6 H 1.08002 * 119.99915 * 4.49955 * 5 4 3 7 7 C 1.37878 * 120.00453 * 184.49439 * 5 4 3 8 8 N 1.31515 * 119.99305 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00232 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47562 * 60.00132 * 9 7 5 11 11 H 1.48509 * 109.47015 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47208 * 299.99825 * 9 7 5 13 13 C 1.46896 * 111.00415 * 66.29439 * 3 2 1 14 14 H 1.09007 * 109.47057 * 324.26872 * 13 3 2 15 15 C 1.50695 * 109.47871 * 204.26796 * 13 3 2 16 16 C 1.38418 * 122.54395 * 129.20583 * 15 13 3 17 17 C 1.33395 * 114.92359 * 179.76422 * 16 15 13 18 18 S 1.75883 * 109.58840 * 0.47920 * 17 16 15 19 19 C 1.33387 * 122.53693 * 309.50079 * 15 13 3 20 20 C 1.52999 * 109.47144 * 84.26473 * 13 3 2 21 21 H 1.09003 * 109.47286 * 174.32004 * 20 13 3 22 22 C 1.53006 * 109.47430 * 294.31746 * 20 13 3 23 23 N 1.46899 * 109.47010 * 54.32127 * 20 13 3 24 24 H 1.09005 * 109.46857 * 184.93128 * 1 2 3 25 25 H 1.09007 * 109.46777 * 304.92756 * 1 2 3 26 26 H 1.08993 * 109.47529 * 64.92890 * 1 2 3 27 27 H 1.08996 * 109.46559 * 240.00026 * 2 1 3 28 28 H 1.09000 * 109.47279 * 119.99787 * 2 1 3 29 29 H 1.09002 * 109.46877 * 58.75069 * 4 3 2 30 30 H 1.09002 * 109.46859 * 178.74490 * 4 3 2 31 31 H 0.97005 * 119.99472 * 179.97438 * 8 7 5 32 32 H 1.08003 * 122.53971 * 0.02562 * 16 15 13 33 33 H 1.07993 * 125.20485 * 180.20887 * 17 16 15 34 34 H 1.08003 * 125.20413 * 359.97049 * 19 15 13 35 35 H 1.08993 * 109.47504 * 195.88020 * 22 20 13 36 36 H 1.08993 * 109.46851 * 315.88780 * 22 20 13 37 37 H 1.09001 * 109.46387 * 75.88442 * 22 20 13 38 38 H 1.00907 * 111.00144 * 184.48148 * 23 20 13 39 39 H 1.00907 * 110.99587 * 308.42862 * 23 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5034 2.1258 -1.1587 5 6 1.9831 1.4707 -2.4282 6 1 2.5477 0.5512 -2.3813 7 6 1.7011 2.0450 -3.6496 8 7 1.0139 3.1648 -3.7065 9 14 2.2951 1.2324 -5.2231 10 1 1.7156 -0.1310 -5.3256 11 1 1.8653 2.0425 -6.3913 12 1 3.7771 1.1402 -5.2037 13 6 1.6753 2.0651 1.2556 14 1 0.6991 1.7223 1.5987 15 6 1.6324 3.5538 1.0254 16 6 0.5576 4.3362 1.4107 17 6 0.6818 5.6359 1.1375 18 16 2.2213 5.9259 0.3378 19 6 2.6249 4.2165 0.4295 20 6 2.7304 1.7433 2.3159 21 1 2.5314 2.3263 3.2152 22 6 2.6765 0.2518 2.6529 23 7 4.0632 2.0808 1.7986 24 1 -0.3633 -1.0239 0.0883 25 1 -0.3633 0.5884 0.8426 26 1 -0.3634 0.4354 -0.9308 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 0.4136 2.1213 -1.1368 30 1 1.8632 3.1541 -1.1222 31 1 0.8158 3.5691 -4.5658 32 1 -0.3138 3.9261 1.8997 33 1 -0.0526 6.3935 1.3677 34 1 3.5371 3.7715 0.0602 35 1 3.2113 0.0703 3.5851 36 1 1.6376 -0.0583 2.7636 37 1 3.1425 -0.3190 1.8497 38 1 4.7836 1.8100 2.4512 39 1 4.2174 1.6597 0.8947 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043123827.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:28 Heat of formation + Delta-G solvation = 36.927267 kcal Electronic energy + Delta-G solvation = -19720.356227 eV Core-core repulsion = 16982.580794 eV Total energy + Delta-G solvation = -2737.775433 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.78780 -37.60955 -36.02261 -34.40053 -31.70234 -30.15718 -29.56195 -28.55873 -26.91329 -24.74312 -23.97830 -22.05423 -20.57135 -19.37823 -18.49832 -18.20538 -17.28094 -16.55141 -16.10947 -15.98271 -15.28752 -14.97482 -14.53188 -14.35287 -14.01974 -13.98537 -13.69049 -13.42674 -13.25001 -13.14479 -12.95170 -12.73805 -12.56980 -12.46477 -12.43263 -12.20730 -12.02331 -11.70009 -11.41546 -11.15058 -10.77628 -10.51192 -9.34433 -9.26718 -9.04042 -8.73300 -8.09071 -6.15362 0.37100 0.98769 1.28859 1.41175 1.42960 1.50059 2.00782 2.44519 3.23244 3.44515 3.86627 4.11617 4.21818 4.31837 4.40013 4.50407 4.54758 4.56830 4.58701 4.74936 4.80644 4.90861 4.98639 5.05982 5.15603 5.19666 5.28214 5.38406 5.44955 5.59183 5.66310 5.69136 5.76319 5.83036 6.21711 6.50988 6.58803 6.85705 6.94984 7.02960 7.51575 9.00641 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014702 B = 0.008805 C = 0.006542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.035685 B = 3179.379024 C = 4278.743662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.041 3.959 3 N -0.519 5.519 4 C 0.202 3.798 5 C -0.513 4.513 6 H 0.058 0.942 7 C 0.005 3.995 8 N -0.928 5.928 9 Si 0.954 3.046 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.270 1.270 13 C 0.140 3.860 14 H 0.050 0.950 15 C -0.115 4.115 16 C -0.140 4.140 17 C -0.224 4.224 18 S 0.059 5.941 19 C -0.145 4.145 20 C 0.114 3.886 21 H 0.076 0.924 22 C -0.181 4.181 23 N -0.841 5.841 24 H 0.069 0.931 25 H 0.052 0.948 26 H 0.027 0.973 27 H 0.057 0.943 28 H 0.102 0.898 29 H -0.047 1.047 30 H 0.037 0.963 31 H 0.258 0.742 32 H 0.146 0.854 33 H 0.182 0.818 34 H 0.157 0.843 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.340 0.660 39 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.799 -1.635 13.359 13.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.086 4.086 3 N -0.242 5.242 4 C 0.076 3.924 5 C -0.552 4.552 6 H 0.076 0.924 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.780 3.220 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.196 1.196 13 C 0.029 3.971 14 H 0.067 0.933 15 C -0.126 4.126 16 C -0.171 4.171 17 C -0.359 4.359 18 S 0.322 5.678 19 C -0.281 4.281 20 C 0.001 3.999 21 H 0.094 0.906 22 C -0.240 4.240 23 N -0.372 5.372 24 H 0.088 0.912 25 H 0.071 0.929 26 H 0.047 0.953 27 H 0.075 0.925 28 H 0.119 0.881 29 H -0.029 1.029 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.163 0.837 33 H 0.200 0.800 34 H 0.174 0.826 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.153 0.847 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.727 0.543 12.637 12.939 hybrid contribution -1.489 -2.338 -0.761 2.874 sum 1.239 -1.795 11.875 12.074 Atomic orbital electron populations 1.22252 0.99239 1.01677 1.00444 1.22501 0.92593 0.90944 1.02594 1.62210 1.58665 1.01949 1.01381 1.19645 0.90718 0.95020 0.87049 1.21499 1.33425 1.08673 0.91601 0.92374 1.25732 0.95806 0.95587 1.02202 1.70102 1.41142 1.19991 1.25686 0.85676 0.78885 0.78349 0.79085 1.19781 1.21486 1.19551 1.20539 0.96900 0.88134 0.91510 0.93276 1.18795 0.94224 0.96840 1.02773 1.20242 0.99783 0.93292 1.03772 1.25635 1.01619 1.00512 1.08116 1.83967 1.15266 1.08885 1.59654 1.25347 1.03815 0.94660 1.04290 1.21228 0.89531 0.94083 0.95032 0.90562 1.22778 1.02374 0.97160 1.01640 1.58782 1.02622 1.67763 1.08045 0.91201 0.92918 0.95341 0.92495 0.88063 1.02902 0.94512 0.93312 0.83677 0.80025 0.82595 0.91446 0.92213 0.91958 0.84721 0.83661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.23 9.18 71.98 0.66 -5.57 16 2 C 0.04 1.46 5.42 86.31 0.47 1.93 16 3 N -0.52 -20.28 3.42 -879.95 -3.01 -23.29 16 4 C 0.20 10.23 3.56 85.55 0.30 10.53 16 5 C -0.51 -28.32 8.61 25.60 0.22 -28.10 16 6 H 0.06 3.14 6.59 -2.91 -0.02 3.12 16 7 C 0.00 0.26 5.46 84.65 0.46 0.72 16 8 N -0.93 -56.06 13.29 21.45 0.28 -55.77 16 9 Si 0.95 44.71 29.54 68.60 2.03 46.73 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 12 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 13 C 0.14 4.72 1.87 44.17 0.08 4.81 16 14 H 0.05 1.64 5.60 -2.38 -0.01 1.63 16 15 C -0.11 -4.21 3.43 -20.92 -0.07 -4.28 16 16 C -0.14 -4.71 9.92 21.22 0.21 -4.50 16 17 C -0.22 -7.11 11.23 66.72 0.75 -6.36 16 18 S 0.06 2.06 23.34 -56.49 -1.32 0.75 16 19 C -0.15 -5.61 7.34 66.72 0.49 -5.12 16 20 C 0.11 3.05 3.19 44.92 0.14 3.20 16 21 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 22 C -0.18 -3.96 7.81 71.98 0.56 -3.40 16 23 N -0.84 -22.90 7.56 -168.67 -1.28 -24.18 16 24 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 25 H 0.05 1.73 6.10 -2.38 -0.01 1.71 16 26 H 0.03 1.22 6.62 -2.39 -0.02 1.20 16 27 H 0.06 2.26 6.54 -2.39 -0.02 2.24 16 28 H 0.10 2.89 3.87 -2.39 -0.01 2.89 16 29 H -0.05 -2.66 6.30 -2.39 -0.02 -2.68 16 30 H 0.04 2.02 4.59 -2.39 -0.01 2.01 16 31 H 0.26 14.93 8.31 -92.70 -0.77 14.16 16 32 H 0.15 4.23 8.06 -2.91 -0.02 4.21 16 33 H 0.18 4.56 8.06 -2.91 -0.02 4.53 16 34 H 0.16 6.46 7.31 -2.91 -0.02 6.44 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 1.28 7.54 -2.39 -0.02 1.26 16 37 H 0.06 1.46 6.37 -2.39 -0.02 1.45 16 38 H 0.34 7.44 8.99 -89.69 -0.81 6.64 16 39 H 0.35 10.84 7.97 -89.69 -0.71 10.13 16 Total: -1.00 -62.28 308.74 0.54 -61.74 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: -0.44 Total: 30.16 kcal Atomic # 6 Polarization: -40.42 SS G_CDS: 4.28 Total: -36.14 kcal Atomic # 7 Polarization: -99.24 SS G_CDS: -4.00 Total: -103.24 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -1.32 Total: 0.75 kcal Total: -62.28 0.54 -61.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043123827.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.666 kcal (2) G-P(sol) polarization free energy of solvation -62.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds