Wall clock time and date at job start Mon Mar 30 2020 06:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47234 * 2 1 4 4 N 1.46900 * 109.47288 * 239.99233 * 2 1 3 5 5 C 1.46904 * 110.99732 * 65.70168 * 4 2 1 6 6 C 1.50697 * 109.46901 * 280.70312 * 5 4 2 7 7 H 1.07991 * 120.00228 * 1.67589 * 6 5 4 8 8 C 1.37883 * 119.99682 * 181.68089 * 6 5 4 9 9 N 1.31517 * 120.00036 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99952 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47410 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.47086 * 119.99612 * 10 8 6 13 13 H 1.48495 * 109.47382 * 239.99820 * 10 8 6 14 14 C 1.46899 * 110.99792 * 189.65204 * 4 2 1 15 15 H 1.09004 * 109.47583 * 277.28354 * 14 4 2 16 16 C 1.52999 * 109.46730 * 157.28328 * 14 4 2 17 17 N 1.46908 * 109.47222 * 54.54884 * 16 14 4 18 18 C 1.50698 * 109.47163 * 37.28449 * 14 4 2 19 19 C 1.38422 * 122.54396 * 234.58348 * 18 14 4 20 20 C 1.33384 * 114.92759 * 179.97438 * 19 18 14 21 21 S 1.75887 * 109.59183 * 0.02562 * 20 19 18 22 22 C 1.33394 * 122.53947 * 54.29781 * 18 14 4 23 23 H 1.09003 * 109.46784 * 52.00047 * 1 2 3 24 24 H 1.09004 * 109.47264 * 171.99386 * 1 2 3 25 25 H 1.09001 * 109.47359 * 292.00084 * 1 2 3 26 26 H 1.09001 * 109.46707 * 119.99824 * 2 1 3 27 27 H 1.08993 * 109.47454 * 67.73969 * 3 2 1 28 28 H 1.08997 * 109.47019 * 187.74975 * 3 2 1 29 29 H 1.09002 * 109.46855 * 307.74015 * 3 2 1 30 30 H 1.09008 * 109.46963 * 40.69861 * 5 4 2 31 31 H 1.08992 * 109.47164 * 160.69749 * 5 4 2 32 32 H 0.96993 * 120.00026 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.46828 * 174.54239 * 16 14 4 34 34 H 1.08998 * 109.47713 * 294.54289 * 16 14 4 35 35 H 1.00897 * 110.99883 * 168.86049 * 17 16 14 36 36 H 1.00900 * 110.99438 * 292.80455 * 17 16 14 37 37 H 1.08001 * 122.53386 * 0.02562 * 19 18 14 38 38 H 1.07994 * 125.20826 * 179.97438 * 20 19 18 39 39 H 1.08001 * 125.19582 * 0.02562 * 22 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 1.6631 0.0475 -2.4172 6 6 0.2228 -0.2247 -2.7667 7 1 -0.3763 -0.8602 -2.1315 8 6 -0.3302 0.3375 -3.8978 9 7 0.3992 1.1117 -4.6712 10 14 -2.1153 -0.0005 -4.3316 11 1 -2.7125 -0.8960 -3.3085 12 1 -2.8668 1.2799 -4.3685 13 1 -2.1860 -0.6545 -5.6629 14 6 3.4699 -0.9146 -1.1238 15 1 3.9926 -0.0125 -1.4418 16 6 3.8561 -2.0776 -2.0398 17 7 3.3653 -1.8142 -3.3992 18 6 3.8544 -1.2439 0.2956 19 6 4.8236 -0.5381 0.9874 20 6 5.0426 -0.9583 2.2342 21 16 3.9868 -2.3188 2.5920 22 6 3.2826 -2.2341 0.9825 23 1 -0.3633 0.6327 -0.8099 24 1 -0.3634 -1.0177 -0.1431 25 1 -0.3634 0.3850 0.9528 26 1 1.8933 -0.5138 0.8900 27 1 1.7942 1.9148 0.9510 28 1 3.1212 1.4456 -0.1386 29 1 1.5681 1.9947 -0.8127 30 1 1.8000 1.1154 -2.2465 31 1 2.3035 -0.2741 -3.2384 32 1 0.0102 1.5075 -5.4667 33 1 4.9412 -2.1802 -2.0588 34 1 3.4107 -2.9990 -1.6648 35 1 3.7577 -2.4695 -4.0585 36 1 2.3569 -1.8313 -3.4290 37 1 5.3613 0.2906 0.5508 38 1 5.7590 -0.5293 2.9190 39 1 2.5076 -2.8857 0.6069 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043123903.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:42 Heat of formation + Delta-G solvation = 61.321085 kcal Electronic energy + Delta-G solvation = -19642.007376 eV Core-core repulsion = 16905.289738 eV Total energy + Delta-G solvation = -2736.717638 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.43474 -36.50695 -34.11815 -32.53042 -30.45110 -29.46818 -27.61779 -26.30598 -25.55266 -23.59016 -22.18996 -20.68284 -18.98790 -18.07503 -17.39489 -16.40332 -15.90484 -14.79910 -14.69359 -14.27185 -13.99397 -13.74204 -13.26086 -12.83298 -12.70540 -12.44843 -12.24033 -12.04621 -11.79597 -11.57490 -11.23627 -11.18248 -11.01551 -10.79925 -10.63728 -10.44568 -10.39457 -10.20911 -9.65588 -9.30128 -8.98335 -8.50403 -8.30583 -8.19982 -7.78125 -7.06390 -5.90126 -3.87103 1.20638 1.84020 2.15516 2.92836 3.34433 3.43196 3.46701 4.49462 4.88498 5.09357 5.26298 5.43387 5.47199 5.66998 5.74334 5.76960 5.83565 5.92945 6.00802 6.11567 6.19599 6.25022 6.37824 6.44923 6.58820 6.60939 6.70248 6.78687 6.85047 7.05506 7.38944 7.55305 7.71464 7.86325 7.96274 8.18903 8.36993 8.47467 8.70953 9.20777 9.72398 11.19351 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.027176 B = 0.006043 C = 0.005617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.064956 B = 4632.450124 C = 4983.696173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.082 3.918 3 C -0.178 4.178 4 N -0.521 5.521 5 C 0.152 3.848 6 C -0.497 4.497 7 H 0.066 0.934 8 C 0.053 3.947 9 N -0.895 5.895 10 Si 0.886 3.114 11 H -0.274 1.274 12 H -0.288 1.288 13 H -0.287 1.287 14 C 0.142 3.858 15 H 0.048 0.952 16 C 0.085 3.915 17 N -0.845 5.845 18 C -0.089 4.089 19 C -0.121 4.121 20 C -0.219 4.219 21 S 0.063 5.937 22 C -0.182 4.182 23 H 0.085 0.915 24 H 0.052 0.948 25 H 0.026 0.974 26 H 0.066 0.934 27 H 0.040 0.960 28 H 0.043 0.957 29 H 0.068 0.932 30 H -0.001 1.001 31 H 0.086 0.914 32 H 0.257 0.743 33 H 0.057 0.943 34 H 0.025 0.975 35 H 0.321 0.679 36 H 0.373 0.627 37 H 0.136 0.864 38 H 0.159 0.841 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.963 -5.372 11.236 14.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.027 4.027 3 C -0.237 4.237 4 N -0.246 5.246 5 C 0.027 3.973 6 C -0.536 4.536 7 H 0.084 0.916 8 C -0.147 4.147 9 N -0.535 5.535 10 Si 0.714 3.286 11 H -0.199 1.199 12 H -0.214 1.214 13 H -0.213 1.213 14 C 0.030 3.970 15 H 0.066 0.934 16 C -0.047 4.047 17 N -0.380 5.380 18 C -0.101 4.101 19 C -0.152 4.152 20 C -0.354 4.354 21 S 0.325 5.675 22 C -0.318 4.318 23 H 0.104 0.896 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.084 0.916 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.016 0.984 31 H 0.103 0.897 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.043 0.957 35 H 0.133 0.867 36 H 0.193 0.807 37 H 0.154 0.846 38 H 0.176 0.824 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 7.827 -5.962 12.396 15.826 hybrid contribution -0.776 0.785 -1.354 1.747 sum 7.050 -5.177 11.042 14.087 Atomic orbital electron populations 1.22036 0.94737 1.02497 1.00279 1.21634 0.95852 0.91531 0.93674 1.22424 1.00372 0.99727 1.01163 1.62543 1.07987 1.50012 1.04049 1.20612 0.97521 0.92019 0.87162 1.21407 0.96248 1.28449 1.07491 0.91563 1.24946 0.97319 0.95873 0.96592 1.69983 1.35683 1.32870 1.14973 0.86638 0.85912 0.77813 0.78192 1.19889 1.21442 1.21344 1.20281 0.91594 0.97259 0.87830 0.93386 1.21627 0.97908 0.95528 0.89673 1.59234 1.16574 1.56821 1.05418 1.19005 0.96996 0.96097 0.98025 1.20146 0.99518 1.01551 0.94034 1.25428 1.06505 1.02747 1.00730 1.84117 1.35049 1.32513 1.15774 1.25447 1.05908 1.04532 0.95930 0.89603 0.92885 0.95486 0.91625 0.94119 0.93829 0.91302 0.98354 0.89706 0.93336 0.92446 0.95677 0.86738 0.80660 0.84628 0.82368 0.81591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 7.77 37.16 0.29 -2.43 16 2 C 0.08 1.55 2.40 -67.71 -0.16 1.39 16 3 C -0.18 -3.33 8.35 37.16 0.31 -3.02 16 4 N -0.52 -10.40 4.07 -221.52 -0.90 -11.30 16 5 C 0.15 3.65 3.37 -4.97 -0.02 3.63 16 6 C -0.50 -12.92 6.79 -34.44 -0.23 -13.15 16 7 H 0.07 1.73 5.84 -52.49 -0.31 1.42 16 8 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 9 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 10 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 C 0.14 2.50 1.68 -68.87 -0.12 2.39 16 15 H 0.05 0.93 7.25 -51.93 -0.38 0.56 16 16 C 0.08 1.40 6.44 -3.82 -0.02 1.38 16 17 N -0.84 -15.40 7.67 -10.36 -0.08 -15.48 16 18 C -0.09 -1.34 2.94 -106.25 -0.31 -1.66 16 19 C -0.12 -1.65 9.68 -41.21 -0.40 -2.05 16 20 C -0.22 -2.61 11.23 29.04 0.33 -2.29 16 21 S 0.06 0.76 23.34 -107.50 -2.51 -1.75 16 22 C -0.18 -2.61 8.63 29.04 0.25 -2.36 16 23 H 0.09 1.93 5.91 -51.93 -0.31 1.63 16 24 H 0.05 1.06 7.45 -51.93 -0.39 0.67 16 25 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 1.18 5.01 -51.93 -0.26 0.92 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.79 6.54 -51.93 -0.34 0.45 16 29 H 0.07 1.47 6.34 -51.93 -0.33 1.14 16 30 H 0.00 -0.03 5.45 -51.92 -0.28 -0.32 16 31 H 0.09 2.15 4.45 -51.93 -0.23 1.91 16 32 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.03 0.41 7.81 -51.93 -0.41 0.00 16 35 H 0.32 4.99 9.08 -39.29 -0.36 4.64 16 36 H 0.37 7.78 6.46 -39.29 -0.25 7.52 16 37 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 39 H 0.17 2.43 8.06 -52.49 -0.42 2.00 16 LS Contribution 308.47 15.07 4.65 4.65 Total: -1.00 -27.42 308.47 -8.82 -36.24 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -5.51 Total: 13.35 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: -0.19 Total: -16.82 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: -0.24 Total: -51.80 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.51 Total: -1.75 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.42 -8.82 -36.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043123903.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.557 kcal (2) G-P(sol) polarization free energy of solvation -27.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds