Wall clock time and date at job start Mon Mar 30 2020 06:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47234 * 2 1 4 4 N 1.46900 * 109.47288 * 239.99233 * 2 1 3 5 5 C 1.46904 * 110.99732 * 65.70168 * 4 2 1 6 6 C 1.50697 * 109.46901 * 280.70312 * 5 4 2 7 7 H 1.07991 * 120.00228 * 1.67589 * 6 5 4 8 8 C 1.37883 * 119.99682 * 181.68089 * 6 5 4 9 9 N 1.31517 * 120.00036 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99952 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47410 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.47086 * 119.99612 * 10 8 6 13 13 H 1.48495 * 109.47382 * 239.99820 * 10 8 6 14 14 C 1.46899 * 110.99792 * 189.65204 * 4 2 1 15 15 H 1.09004 * 109.47583 * 277.28354 * 14 4 2 16 16 C 1.52999 * 109.46730 * 157.28328 * 14 4 2 17 17 N 1.46908 * 109.47222 * 54.54884 * 16 14 4 18 18 C 1.50698 * 109.47163 * 37.28449 * 14 4 2 19 19 C 1.38422 * 122.54396 * 234.58348 * 18 14 4 20 20 C 1.33384 * 114.92759 * 179.97438 * 19 18 14 21 21 S 1.75887 * 109.59183 * 0.02562 * 20 19 18 22 22 C 1.33394 * 122.53947 * 54.29781 * 18 14 4 23 23 H 1.09003 * 109.46784 * 52.00047 * 1 2 3 24 24 H 1.09004 * 109.47264 * 171.99386 * 1 2 3 25 25 H 1.09001 * 109.47359 * 292.00084 * 1 2 3 26 26 H 1.09001 * 109.46707 * 119.99824 * 2 1 3 27 27 H 1.08993 * 109.47454 * 67.73969 * 3 2 1 28 28 H 1.08997 * 109.47019 * 187.74975 * 3 2 1 29 29 H 1.09002 * 109.46855 * 307.74015 * 3 2 1 30 30 H 1.09008 * 109.46963 * 40.69861 * 5 4 2 31 31 H 1.08992 * 109.47164 * 160.69749 * 5 4 2 32 32 H 0.96993 * 120.00026 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.46828 * 174.54239 * 16 14 4 34 34 H 1.08998 * 109.47713 * 294.54289 * 16 14 4 35 35 H 1.00897 * 110.99883 * 168.86049 * 17 16 14 36 36 H 1.00900 * 110.99438 * 292.80455 * 17 16 14 37 37 H 1.08001 * 122.53386 * 0.02562 * 19 18 14 38 38 H 1.07994 * 125.20826 * 179.97438 * 20 19 18 39 39 H 1.08001 * 125.19582 * 0.02562 * 22 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 1.6631 0.0475 -2.4172 6 6 0.2228 -0.2247 -2.7667 7 1 -0.3763 -0.8602 -2.1315 8 6 -0.3302 0.3375 -3.8978 9 7 0.3992 1.1117 -4.6712 10 14 -2.1153 -0.0005 -4.3316 11 1 -2.7125 -0.8960 -3.3085 12 1 -2.8668 1.2799 -4.3685 13 1 -2.1860 -0.6545 -5.6629 14 6 3.4699 -0.9146 -1.1238 15 1 3.9926 -0.0125 -1.4418 16 6 3.8561 -2.0776 -2.0398 17 7 3.3653 -1.8142 -3.3992 18 6 3.8544 -1.2439 0.2956 19 6 4.8236 -0.5381 0.9874 20 6 5.0426 -0.9583 2.2342 21 16 3.9868 -2.3188 2.5920 22 6 3.2826 -2.2341 0.9825 23 1 -0.3633 0.6327 -0.8099 24 1 -0.3634 -1.0177 -0.1431 25 1 -0.3634 0.3850 0.9528 26 1 1.8933 -0.5138 0.8900 27 1 1.7942 1.9148 0.9510 28 1 3.1212 1.4456 -0.1386 29 1 1.5681 1.9947 -0.8127 30 1 1.8000 1.1154 -2.2465 31 1 2.3035 -0.2741 -3.2384 32 1 0.0102 1.5075 -5.4667 33 1 4.9412 -2.1802 -2.0588 34 1 3.4107 -2.9990 -1.6648 35 1 3.7577 -2.4695 -4.0585 36 1 2.3569 -1.8313 -3.4290 37 1 5.3613 0.2906 0.5508 38 1 5.7590 -0.5293 2.9190 39 1 2.5076 -2.8857 0.6069 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043123903.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:41 Heat of formation + Delta-G solvation = 43.524919 kcal Electronic energy + Delta-G solvation = -19642.779076 eV Core-core repulsion = 16905.289738 eV Total energy + Delta-G solvation = -2737.489337 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.80025 -37.83799 -35.56637 -34.54995 -31.85011 -30.97874 -29.14455 -27.85008 -27.24018 -24.73969 -24.06295 -22.02893 -20.42497 -19.35288 -18.60878 -18.09632 -17.58489 -16.50974 -16.05738 -15.82502 -15.36937 -15.24984 -14.80631 -14.40561 -13.97772 -13.82081 -13.62850 -13.41741 -13.30681 -12.97576 -12.89594 -12.74402 -12.63134 -12.42453 -12.29115 -12.15720 -11.92343 -11.65147 -11.30593 -11.01424 -10.89380 -10.33386 -9.54695 -9.37726 -9.14647 -8.73610 -7.98777 -6.00522 0.17623 0.84776 1.13737 1.43261 1.46426 1.56488 1.83216 2.50893 3.32855 3.42613 3.76905 4.19173 4.23087 4.28030 4.36160 4.39864 4.54297 4.61542 4.65818 4.78347 4.82032 4.90065 4.99110 5.07725 5.12572 5.17523 5.23719 5.40935 5.49900 5.60848 5.68560 5.75129 5.83203 5.96284 6.34593 6.42363 6.65864 6.79218 6.92239 7.16769 7.62490 9.10461 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.027176 B = 0.006043 C = 0.005617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.064956 B = 4632.450124 C = 4983.696173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.082 3.918 3 C -0.168 4.168 4 N -0.520 5.520 5 C 0.167 3.833 6 C -0.489 4.489 7 H 0.065 0.935 8 C 0.002 3.998 9 N -0.932 5.932 10 Si 0.946 3.054 11 H -0.266 1.266 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.144 3.856 15 H 0.025 0.975 16 C 0.088 3.912 17 N -0.858 5.858 18 C -0.097 4.097 19 C -0.142 4.142 20 C -0.206 4.206 21 S 0.109 5.891 22 C -0.199 4.199 23 H 0.052 0.948 24 H 0.047 0.953 25 H 0.052 0.948 26 H 0.085 0.915 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.034 0.966 30 H -0.035 1.035 31 H 0.075 0.925 32 H 0.255 0.745 33 H 0.075 0.925 34 H 0.031 0.969 35 H 0.335 0.665 36 H 0.357 0.643 37 H 0.139 0.861 38 H 0.188 0.812 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.428 -6.498 13.531 17.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.027 4.027 3 C -0.227 4.227 4 N -0.244 5.244 5 C 0.041 3.959 6 C -0.528 4.528 7 H 0.083 0.917 8 C -0.194 4.194 9 N -0.575 5.575 10 Si 0.774 3.226 11 H -0.191 1.191 12 H -0.217 1.217 13 H -0.212 1.212 14 C 0.033 3.967 15 H 0.043 0.957 16 C -0.044 4.044 17 N -0.392 5.392 18 C -0.111 4.111 19 C -0.173 4.173 20 C -0.341 4.341 21 S 0.372 5.628 22 C -0.335 4.335 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.103 0.897 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.053 0.947 30 H -0.017 1.017 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.049 0.951 35 H 0.148 0.852 36 H 0.175 0.825 37 H 0.157 0.843 38 H 0.205 0.795 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 8.308 -7.111 14.712 18.331 hybrid contribution -0.845 1.095 -1.953 2.393 sum 7.463 -6.016 12.759 15.958 Atomic orbital electron populations 1.21928 0.95250 1.01437 1.00371 1.21700 0.95399 0.91744 0.93823 1.22300 1.00162 0.99304 1.00907 1.62433 1.09984 1.48981 1.02996 1.20295 0.96546 0.90293 0.88772 1.21646 0.97127 1.27215 1.06842 0.91733 1.25643 1.00926 0.96018 0.96849 1.70110 1.37354 1.34424 1.15579 0.85679 0.81563 0.77458 0.77932 1.19071 1.21677 1.21164 1.20233 0.89572 0.96699 0.90200 0.95674 1.21660 0.98860 0.95262 0.88587 1.59144 1.15418 1.57807 1.06875 1.18806 0.98308 0.97257 0.96685 1.20164 1.00004 1.02276 0.94850 1.25813 1.06048 1.01938 1.00324 1.84009 1.33849 1.31796 1.13116 1.25483 1.06053 1.04246 0.97717 0.92941 0.93422 0.92884 0.89676 0.91897 0.93564 0.94717 1.01733 0.90749 0.93585 0.90701 0.95105 0.85166 0.82485 0.84314 0.79466 0.82226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.14 7.77 71.98 0.56 -4.58 16 2 C 0.08 3.05 2.40 44.92 0.11 3.16 16 3 C -0.17 -6.27 8.35 71.98 0.60 -5.67 16 4 N -0.52 -20.93 4.07 -854.77 -3.48 -24.41 16 5 C 0.17 8.32 3.37 85.56 0.29 8.60 16 6 C -0.49 -26.02 6.79 25.60 0.17 -25.84 16 7 H 0.06 3.40 5.84 -2.91 -0.02 3.38 16 8 C 0.00 0.13 5.46 84.66 0.46 0.60 16 9 N -0.93 -55.30 13.29 21.45 0.28 -55.02 16 10 Si 0.95 44.17 29.54 68.60 2.03 46.19 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 13 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 14 C 0.14 5.08 1.68 44.17 0.07 5.15 16 15 H 0.03 1.00 7.25 -2.39 -0.02 0.98 16 16 C 0.09 2.87 6.44 86.30 0.56 3.43 16 17 N -0.86 -31.63 7.67 -186.71 -1.43 -33.07 16 18 C -0.10 -2.80 2.94 -20.92 -0.06 -2.87 16 19 C -0.14 -3.55 9.68 21.21 0.21 -3.34 16 20 C -0.21 -4.16 11.23 66.72 0.75 -3.41 16 21 S 0.11 2.25 23.34 -56.49 -1.32 0.94 16 22 C -0.20 -5.27 8.63 66.72 0.58 -4.69 16 23 H 0.05 2.38 5.91 -2.39 -0.01 2.37 16 24 H 0.05 1.86 7.45 -2.38 -0.02 1.85 16 25 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.09 2.90 5.01 -2.39 -0.01 2.88 16 27 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.05 1.67 6.54 -2.39 -0.02 1.65 16 29 H 0.03 1.52 6.34 -2.39 -0.02 1.50 16 30 H -0.03 -1.97 5.45 -2.38 -0.01 -1.98 16 31 H 0.08 3.91 4.45 -2.39 -0.01 3.90 16 32 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 33 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.03 0.98 7.81 -2.39 -0.02 0.96 16 35 H 0.33 10.43 9.08 -89.70 -0.81 9.61 16 36 H 0.36 15.25 6.46 -89.69 -0.58 14.67 16 37 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 38 H 0.19 2.65 8.06 -2.91 -0.02 2.62 16 39 H 0.16 4.41 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -59.75 308.47 0.05 -59.70 By element: Atomic # 1 Polarization: 35.46 SS G_CDS: -0.32 Total: 35.13 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: 4.29 Total: -29.47 kcal Atomic # 7 Polarization: -107.87 SS G_CDS: -4.63 Total: -112.49 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -1.32 Total: 0.94 kcal Total: -59.75 0.05 -59.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043123903.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.226 kcal (2) G-P(sol) polarization free energy of solvation -59.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds