Wall clock time and date at job start Mon Mar 30 2020 06:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46904 * 109.46956 * 2 1 4 4 C 1.46904 * 111.00022 * 199.60084 * 3 2 1 5 5 C 1.50696 * 109.47097 * 76.15750 * 4 3 2 6 6 H 1.07998 * 120.00265 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99926 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99836 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00129 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47231 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47085 * 120.00311 * 9 7 5 12 12 H 1.48506 * 109.47213 * 240.00207 * 9 7 5 13 13 C 1.46897 * 111.00015 * 75.64516 * 3 2 1 14 14 H 1.09003 * 109.47204 * 320.97957 * 13 3 2 15 15 C 1.52993 * 109.47154 * 80.98216 * 13 3 2 16 16 N 1.46902 * 109.47134 * 300.84856 * 15 13 3 17 17 C 1.50710 * 109.47057 * 200.97925 * 13 3 2 18 18 C 1.33383 * 125.20217 * 144.40816 * 17 13 3 19 19 C 1.38423 * 114.92148 * 179.97438 * 18 17 13 20 20 C 1.33385 * 114.92240 * 359.97438 * 19 18 17 21 21 C 1.50692 * 125.20688 * 179.97438 * 20 19 18 22 22 S 1.75880 * 125.20320 * 324.10441 * 17 13 3 23 23 H 1.09008 * 109.47327 * 54.37509 * 1 2 3 24 24 H 1.08996 * 109.47299 * 174.37143 * 1 2 3 25 25 H 1.08997 * 109.47663 * 294.37572 * 1 2 3 26 26 H 1.08994 * 109.47393 * 119.99646 * 2 1 3 27 27 H 1.08995 * 109.47435 * 239.99981 * 2 1 3 28 28 H 1.09000 * 109.46887 * 196.16470 * 4 3 2 29 29 H 1.09004 * 109.46585 * 316.16196 * 4 3 2 30 30 H 0.97001 * 119.99784 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.47671 * 60.85481 * 15 13 3 32 32 H 1.09005 * 109.47402 * 180.85391 * 15 13 3 33 33 H 1.00899 * 110.99774 * 179.97438 * 16 15 13 34 34 H 1.00897 * 110.99942 * 303.95489 * 16 15 13 35 35 H 1.08011 * 122.54105 * 0.02562 * 18 17 13 36 36 H 1.08003 * 122.53859 * 179.97438 * 19 18 17 37 37 H 1.09003 * 109.47523 * 90.00763 * 21 20 19 38 38 H 1.09001 * 109.47453 * 210.00523 * 21 20 19 39 39 H 1.09004 * 109.47380 * 330.00529 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4132 1.4508 -0.4601 5 6 3.4558 1.2900 -1.9578 6 1 2.5394 1.1532 -2.5126 7 6 4.6648 1.3187 -2.6201 8 7 5.7808 1.4859 -1.9446 9 14 4.7176 1.1202 -4.4767 10 1 3.3369 0.9487 -4.9957 11 1 5.3286 2.3286 -5.0866 12 1 5.5294 -0.0739 -4.8240 13 6 1.8745 1.9947 1.3286 14 1 0.9323 1.6753 1.7740 15 6 3.0360 1.5540 2.2215 16 7 3.0388 0.0893 2.3341 17 6 1.8842 3.4959 1.1962 18 6 1.1636 4.3380 1.9384 19 6 1.3372 5.6774 1.6356 20 6 2.1992 5.9232 0.6478 21 6 2.5608 7.2917 0.1307 22 16 2.8531 4.4060 0.0445 23 1 -0.3634 0.5986 -0.8354 24 1 -0.3634 -1.0227 -0.1008 25 1 -0.3634 0.4241 0.9360 26 1 1.8933 -0.5137 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 3.8413 2.4149 -0.1857 29 1 3.9882 0.6515 0.0076 30 1 6.6313 1.5064 -2.4106 31 1 3.9773 1.8866 1.7839 32 1 2.9203 1.9943 3.2120 33 1 3.7977 -0.2269 2.9191 34 1 2.1522 -0.2486 2.6772 35 1 0.4958 4.0003 2.7173 36 1 0.8143 6.4640 2.1594 37 1 3.4144 7.6771 0.6884 38 1 2.8180 7.2245 -0.9264 39 1 1.7117 7.9636 0.2560 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043242861.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:38 Heat of formation + Delta-G solvation = 40.825200 kcal Electronic energy + Delta-G solvation = -19144.986504 eV Core-core repulsion = 16407.380098 eV Total energy + Delta-G solvation = -2737.606406 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.50846 -36.96511 -33.41230 -32.40013 -31.95061 -30.03350 -28.36738 -25.90633 -24.68166 -22.66533 -22.41482 -21.63846 -19.36228 -18.28008 -16.70992 -16.13418 -15.42394 -15.06137 -14.59315 -14.26023 -14.00136 -13.64586 -13.55654 -13.21566 -12.85160 -12.74707 -12.05241 -12.03911 -11.94692 -11.72947 -11.43375 -11.17474 -10.98228 -10.88217 -10.82565 -10.61871 -10.33750 -10.07071 -9.67205 -9.49886 -9.09098 -8.44872 -8.30411 -7.89508 -7.73344 -6.92991 -5.93018 -3.92123 1.58878 2.33576 2.79467 3.22354 3.36029 3.43609 3.49167 4.50420 4.75996 4.98821 5.29502 5.41709 5.42888 5.57001 5.62200 5.67263 5.76366 5.83106 5.91445 5.93979 6.00854 6.15146 6.20121 6.25058 6.39552 6.58676 6.68377 6.79897 6.88332 7.03972 7.06088 7.33277 7.35007 7.63160 7.68369 7.93674 8.21308 8.34121 8.66308 9.15823 9.70568 11.16941 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014018 B = 0.008532 C = 0.006261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.965940 B = 3281.075240 C = 4471.248113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.041 3.959 3 N -0.522 5.522 4 C 0.193 3.807 5 C -0.497 4.497 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.149 3.851 14 H 0.080 0.920 15 C 0.036 3.964 16 N -0.832 5.832 17 C -0.156 4.156 18 C -0.158 4.158 19 C -0.148 4.148 20 C -0.237 4.237 21 C -0.076 4.076 22 S 0.212 5.788 23 H 0.054 0.946 24 H 0.044 0.956 25 H 0.037 0.963 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.027 0.973 29 H 0.016 0.984 30 H 0.258 0.742 31 H 0.085 0.915 32 H 0.019 0.981 33 H 0.336 0.664 34 H 0.334 0.666 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.195 4.129 9.142 12.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.088 4.088 3 N -0.245 5.245 4 C 0.068 3.932 5 C -0.536 4.536 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.719 3.281 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.213 1.213 13 C 0.038 3.962 14 H 0.098 0.902 15 C -0.097 4.097 16 N -0.362 5.362 17 C -0.276 4.276 18 C -0.189 4.189 19 C -0.178 4.178 20 C -0.355 4.355 21 C -0.134 4.134 22 S 0.478 5.522 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.044 0.956 29 H 0.034 0.966 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.037 0.963 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.123 4.045 6.849 10.038 hybrid contribution -0.603 0.080 1.706 1.812 sum -6.726 4.125 8.555 11.638 Atomic orbital electron populations 1.21831 0.97663 0.99891 1.00864 1.22292 0.93088 0.90295 1.03094 1.62445 1.25422 1.17703 1.18978 1.19865 0.82062 0.95847 0.95468 1.21211 0.92537 1.47958 0.91890 0.92065 1.24925 0.95665 0.95810 0.98078 1.69965 0.97585 1.51023 1.35220 0.86556 0.78009 0.77479 0.86081 1.19732 1.21178 1.21277 1.20108 0.96929 0.87546 0.91655 0.90246 1.22597 1.01632 0.87822 0.97627 1.58852 1.08009 1.10402 1.58978 1.24524 1.02959 0.98824 1.01246 1.19794 1.03565 0.92490 1.03017 1.19775 1.01910 0.96282 0.99862 1.25167 1.05306 1.01592 1.03393 1.20208 1.01295 0.91120 1.00823 1.85659 1.40203 0.92016 1.34278 0.92671 0.93692 0.94362 0.91394 0.90763 0.95610 0.96594 0.93218 0.89662 0.96263 0.85085 0.85374 0.85733 0.86039 0.91538 0.91621 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.95 37.16 0.37 -1.95 16 2 C 0.04 0.78 5.29 -3.82 -0.02 0.75 16 3 N -0.52 -10.97 4.14 -229.47 -0.95 -11.92 16 4 C 0.19 4.82 2.72 -4.98 -0.01 4.81 16 5 C -0.50 -13.81 8.53 -34.44 -0.29 -14.10 16 6 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.29 13.29 55.43 0.74 -25.56 16 9 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 10 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 13 C 0.15 2.68 2.37 -68.87 -0.16 2.52 16 14 H 0.08 1.31 6.54 -51.93 -0.34 0.97 16 15 C 0.04 0.60 5.52 -3.83 -0.02 0.58 16 16 N -0.83 -12.44 6.61 -10.37 -0.07 -12.51 16 17 C -0.16 -2.86 5.44 -36.00 -0.20 -3.06 16 18 C -0.16 -2.55 10.04 -41.21 -0.41 -2.96 16 19 C -0.15 -2.30 10.05 -41.21 -0.41 -2.71 16 20 C -0.24 -3.90 6.51 -36.01 -0.23 -4.14 16 21 C -0.08 -1.00 10.38 36.00 0.37 -0.63 16 22 S 0.21 4.19 19.93 -107.50 -2.14 2.05 16 23 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.04 0.56 6.90 -51.93 -0.36 0.20 16 26 H 0.07 1.20 4.50 -51.93 -0.23 0.97 16 27 H 0.07 1.61 7.32 -51.93 -0.38 1.23 16 28 H 0.03 0.68 4.33 -39.40 -0.17 0.51 16 29 H 0.02 0.44 7.04 -51.93 -0.37 0.08 16 30 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.09 1.71 6.46 -51.93 -0.34 1.38 16 32 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.34 4.42 9.08 -39.29 -0.36 4.07 16 34 H 0.33 4.24 8.16 -39.29 -0.32 3.92 16 35 H 0.12 1.72 8.06 -52.48 -0.42 1.30 16 36 H 0.12 1.58 8.06 -52.48 -0.42 1.16 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 318.50 15.07 4.80 4.80 Total: -1.00 -29.81 318.50 -9.56 -39.36 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -5.79 Total: 6.35 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -1.12 Total: -19.40 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.28 Total: -49.98 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 4.19 SS G_CDS: -2.14 Total: 2.05 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.81 -9.56 -39.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043242861.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.189 kcal (2) G-P(sol) polarization free energy of solvation -29.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds