Wall clock time and date at job start Mon Mar 30 2020 06:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46904 * 109.46956 * 2 1 4 4 C 1.46904 * 111.00022 * 199.60084 * 3 2 1 5 5 C 1.50696 * 109.47097 * 76.15750 * 4 3 2 6 6 H 1.07998 * 120.00265 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99926 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99836 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00129 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47231 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47085 * 120.00311 * 9 7 5 12 12 H 1.48506 * 109.47213 * 240.00207 * 9 7 5 13 13 C 1.46897 * 111.00015 * 75.64516 * 3 2 1 14 14 H 1.09003 * 109.47204 * 320.97957 * 13 3 2 15 15 C 1.52993 * 109.47154 * 80.98216 * 13 3 2 16 16 N 1.46902 * 109.47134 * 300.84856 * 15 13 3 17 17 C 1.50710 * 109.47057 * 200.97925 * 13 3 2 18 18 C 1.33383 * 125.20217 * 144.40816 * 17 13 3 19 19 C 1.38423 * 114.92148 * 179.97438 * 18 17 13 20 20 C 1.33385 * 114.92240 * 359.97438 * 19 18 17 21 21 C 1.50692 * 125.20688 * 179.97438 * 20 19 18 22 22 S 1.75880 * 125.20320 * 324.10441 * 17 13 3 23 23 H 1.09008 * 109.47327 * 54.37509 * 1 2 3 24 24 H 1.08996 * 109.47299 * 174.37143 * 1 2 3 25 25 H 1.08997 * 109.47663 * 294.37572 * 1 2 3 26 26 H 1.08994 * 109.47393 * 119.99646 * 2 1 3 27 27 H 1.08995 * 109.47435 * 239.99981 * 2 1 3 28 28 H 1.09000 * 109.46887 * 196.16470 * 4 3 2 29 29 H 1.09004 * 109.46585 * 316.16196 * 4 3 2 30 30 H 0.97001 * 119.99784 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.47671 * 60.85481 * 15 13 3 32 32 H 1.09005 * 109.47402 * 180.85391 * 15 13 3 33 33 H 1.00899 * 110.99774 * 179.97438 * 16 15 13 34 34 H 1.00897 * 110.99942 * 303.95489 * 16 15 13 35 35 H 1.08011 * 122.54105 * 0.02562 * 18 17 13 36 36 H 1.08003 * 122.53859 * 179.97438 * 19 18 17 37 37 H 1.09003 * 109.47523 * 90.00763 * 21 20 19 38 38 H 1.09001 * 109.47453 * 210.00523 * 21 20 19 39 39 H 1.09004 * 109.47380 * 330.00529 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4132 1.4508 -0.4601 5 6 3.4558 1.2900 -1.9578 6 1 2.5394 1.1532 -2.5126 7 6 4.6648 1.3187 -2.6201 8 7 5.7808 1.4859 -1.9446 9 14 4.7176 1.1202 -4.4767 10 1 3.3369 0.9487 -4.9957 11 1 5.3286 2.3286 -5.0866 12 1 5.5294 -0.0739 -4.8240 13 6 1.8745 1.9947 1.3286 14 1 0.9323 1.6753 1.7740 15 6 3.0360 1.5540 2.2215 16 7 3.0388 0.0893 2.3341 17 6 1.8842 3.4959 1.1962 18 6 1.1636 4.3380 1.9384 19 6 1.3372 5.6774 1.6356 20 6 2.1992 5.9232 0.6478 21 6 2.5608 7.2917 0.1307 22 16 2.8531 4.4060 0.0445 23 1 -0.3634 0.5986 -0.8354 24 1 -0.3634 -1.0227 -0.1008 25 1 -0.3634 0.4241 0.9360 26 1 1.8933 -0.5137 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 3.8413 2.4149 -0.1857 29 1 3.9882 0.6515 0.0076 30 1 6.6313 1.5064 -2.4106 31 1 3.9773 1.8866 1.7839 32 1 2.9203 1.9943 3.2120 33 1 3.7977 -0.2269 2.9191 34 1 2.1522 -0.2486 2.6772 35 1 0.4958 4.0003 2.7173 36 1 0.8143 6.4640 2.1594 37 1 3.4144 7.6771 0.6884 38 1 2.8180 7.2245 -0.9264 39 1 1.7117 7.9636 0.2560 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043242861.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:38 Heat of formation + Delta-G solvation = 20.801491 kcal Electronic energy + Delta-G solvation = -19145.854797 eV Core-core repulsion = 16407.380098 eV Total energy + Delta-G solvation = -2738.474699 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.97447 -38.30201 -35.09913 -34.22174 -33.19808 -31.50528 -29.93086 -27.64463 -25.98874 -24.43669 -23.83111 -23.04479 -20.89793 -19.61791 -18.54997 -17.71372 -16.82327 -16.73869 -16.18529 -15.87445 -15.36124 -15.05401 -14.91755 -14.58518 -14.24139 -14.05676 -13.85620 -13.52091 -13.31621 -13.04619 -12.90531 -12.77923 -12.58326 -12.38746 -12.33202 -12.24380 -12.13075 -11.68926 -11.34045 -11.20190 -10.92480 -10.41430 -9.76093 -9.20705 -9.19787 -8.53597 -8.08217 -6.15230 0.27677 0.96217 1.38819 1.40312 1.46327 1.52784 1.97674 2.44906 3.22717 3.47998 3.53391 4.01613 4.14396 4.27621 4.30584 4.50169 4.51965 4.55764 4.74761 4.76049 4.78060 4.85721 4.88628 5.03971 5.14015 5.21960 5.32959 5.40734 5.45446 5.49805 5.52128 5.68567 5.80205 5.84691 6.18505 6.24820 6.57659 6.62396 6.83828 7.01287 7.51632 8.99965 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014018 B = 0.008532 C = 0.006261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.965940 B = 3281.075240 C = 4471.248113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.039 3.961 3 N -0.531 5.531 4 C 0.214 3.786 5 C -0.508 4.508 6 H 0.047 0.953 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.951 3.049 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.280 1.280 13 C 0.151 3.849 14 H 0.104 0.896 15 C 0.048 3.952 16 N -0.842 5.842 17 C -0.171 4.171 18 C -0.142 4.142 19 C -0.146 4.146 20 C -0.223 4.223 21 C -0.077 4.077 22 S 0.098 5.902 23 H 0.037 0.963 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.083 0.917 27 H 0.037 0.963 28 H 0.018 0.982 29 H -0.017 1.017 30 H 0.260 0.740 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.346 0.654 34 H 0.350 0.650 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.079 0.921 38 H 0.058 0.942 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.378 4.961 10.578 14.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.089 4.089 3 N -0.255 5.255 4 C 0.088 3.912 5 C -0.547 4.547 6 H 0.066 0.934 7 C -0.191 4.191 8 N -0.570 5.570 9 Si 0.777 3.223 10 H -0.194 1.194 11 H -0.206 1.206 12 H -0.206 1.206 13 C 0.040 3.960 14 H 0.122 0.878 15 C -0.085 4.085 16 N -0.375 5.375 17 C -0.289 4.289 18 C -0.173 4.173 19 C -0.176 4.176 20 C -0.341 4.341 21 C -0.136 4.136 22 S 0.363 5.637 23 H 0.056 0.944 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.101 0.899 27 H 0.055 0.945 28 H 0.036 0.964 29 H 0.000 1.000 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.161 0.839 34 H 0.164 0.836 35 H 0.176 0.824 36 H 0.176 0.824 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.330 4.861 8.302 12.725 hybrid contribution 0.007 -0.111 1.359 1.364 sum -8.323 4.750 9.661 13.608 Atomic orbital electron populations 1.21721 0.94798 1.01283 1.01242 1.22341 0.95330 0.89251 1.01999 1.62342 1.22691 1.18900 1.21533 1.19422 0.83992 0.94193 0.93612 1.21477 0.92033 1.47474 0.93681 0.93429 1.25674 0.95371 0.95659 1.02382 1.70079 0.98014 1.52083 1.36849 0.85603 0.78059 0.77618 0.80979 1.19376 1.20635 1.20579 1.20192 0.98214 0.87429 0.90172 0.87786 1.22329 0.99158 0.88919 0.98113 1.58699 1.09443 1.09453 1.59924 1.24545 1.03773 0.98996 1.01614 1.20217 1.02268 0.92456 1.02360 1.20195 1.01204 0.96988 0.99245 1.25385 1.04756 1.00720 1.03209 1.20334 1.02949 0.89750 1.00525 1.85987 1.43506 0.96450 1.37720 0.94363 0.91390 0.92214 0.89922 0.94470 0.96433 0.99963 0.93163 0.93823 0.93940 0.83906 0.83564 0.82449 0.82396 0.90241 0.92259 0.88824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.01 9.95 71.98 0.72 -3.30 16 2 C 0.04 1.48 5.29 86.30 0.46 1.94 16 3 N -0.53 -22.71 4.14 -879.92 -3.64 -26.36 16 4 C 0.21 11.24 2.72 85.55 0.23 11.47 16 5 C -0.51 -29.48 8.53 25.60 0.22 -29.26 16 6 H 0.05 2.82 7.81 -2.91 -0.02 2.79 16 7 C 0.01 0.39 5.46 84.65 0.46 0.85 16 8 N -0.93 -56.54 13.29 21.45 0.28 -56.26 16 9 Si 0.95 46.05 29.54 68.60 2.03 48.08 16 10 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 11 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 13 C 0.15 5.29 2.37 44.17 0.10 5.39 16 14 H 0.10 3.10 6.54 -2.39 -0.02 3.08 16 15 C 0.05 1.59 5.52 86.30 0.48 2.07 16 16 N -0.84 -24.56 6.61 -186.72 -1.23 -25.80 16 17 C -0.17 -6.10 5.44 24.59 0.13 -5.97 16 18 C -0.14 -4.14 10.04 21.21 0.21 -3.93 16 19 C -0.15 -4.05 10.05 21.22 0.21 -3.84 16 20 C -0.22 -7.02 6.51 24.58 0.16 -6.86 16 21 C -0.08 -1.87 10.38 71.23 0.74 -1.13 16 22 S 0.10 4.00 19.93 -56.49 -1.13 2.87 16 23 H 0.04 1.27 8.14 -2.38 -0.02 1.26 16 24 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.06 1.54 6.90 -2.39 -0.02 1.53 16 26 H 0.08 2.88 4.50 -2.39 -0.01 2.87 16 27 H 0.04 1.67 7.32 -2.39 -0.02 1.65 16 28 H 0.02 1.00 4.33 -10.36 -0.04 0.95 16 29 H -0.02 -1.01 7.04 -2.38 -0.02 -1.02 16 30 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 31 H 0.04 1.83 6.46 -2.39 -0.02 1.82 16 32 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.35 8.92 9.08 -89.69 -0.81 8.11 16 34 H 0.35 8.13 8.16 -89.70 -0.73 7.40 16 35 H 0.16 3.55 8.06 -2.90 -0.02 3.53 16 36 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 37 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.09 1.76 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -67.75 318.50 -0.08 -67.84 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -0.52 Total: 22.19 kcal Atomic # 6 Polarization: -36.69 SS G_CDS: 4.13 Total: -32.56 kcal Atomic # 7 Polarization: -103.82 SS G_CDS: -4.59 Total: -108.41 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Atomic # 16 Polarization: 4.00 SS G_CDS: -1.13 Total: 2.87 kcal Total: -67.75 -0.08 -67.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043242861.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.637 kcal (2) G-P(sol) polarization free energy of solvation -67.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds