Wall clock time and date at job start Mon Mar 30 2020 06:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.47411 * 2 1 4 4 C 1.46897 * 111.00352 * 172.07708 * 3 2 1 5 5 C 1.50707 * 109.47164 * 287.25648 * 4 3 2 6 6 H 1.07999 * 119.99895 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99820 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00008 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99996 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47196 * 90.00375 * 9 7 5 11 11 H 1.48510 * 109.47014 * 209.99742 * 9 7 5 12 12 H 1.48493 * 109.47390 * 329.99854 * 9 7 5 13 13 C 1.46892 * 111.00388 * 296.03896 * 3 2 1 14 14 H 1.09002 * 109.47539 * 38.45254 * 13 3 2 15 15 C 1.53007 * 109.47007 * 278.45994 * 13 3 2 16 16 N 1.46896 * 109.46820 * 58.80462 * 15 13 3 17 17 C 1.50694 * 109.47649 * 158.46128 * 13 3 2 18 18 C 1.33391 * 125.20737 * 215.36168 * 17 13 3 19 19 C 1.38417 * 114.92374 * 179.85839 * 18 17 13 20 20 C 1.33391 * 114.92347 * 0.42783 * 19 18 17 21 21 C 1.50695 * 125.20460 * 179.75365 * 20 19 18 22 22 S 1.75887 * 109.59118 * 359.77310 * 20 19 18 23 23 H 1.08998 * 109.47295 * 186.19662 * 1 2 3 24 24 H 1.09008 * 109.46660 * 306.19083 * 1 2 3 25 25 H 1.08994 * 109.47280 * 66.18638 * 1 2 3 26 26 H 1.09003 * 109.46978 * 240.00516 * 2 1 3 27 27 H 1.08998 * 109.47471 * 120.00145 * 2 1 3 28 28 H 1.08993 * 109.47309 * 167.25466 * 4 3 2 29 29 H 1.09003 * 109.47057 * 47.24891 * 4 3 2 30 30 H 0.97000 * 119.99756 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47335 * 178.80829 * 15 13 3 32 32 H 1.08998 * 109.47128 * 298.81016 * 15 13 3 33 33 H 1.00905 * 111.00144 * 56.05213 * 16 15 13 34 34 H 1.00904 * 111.00142 * 180.02562 * 16 15 13 35 35 H 1.08003 * 122.53504 * 0.02562 * 18 17 13 36 36 H 1.08005 * 122.53885 * 180.20128 * 19 18 17 37 37 H 1.09005 * 109.47109 * 179.97438 * 21 20 19 38 38 H 1.09001 * 109.47172 * 299.99596 * 21 20 19 39 39 H 1.08997 * 109.47654 * 59.99946 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4758 1.4285 0.1890 5 6 3.8073 1.0849 1.6185 6 1 3.0155 0.8574 2.3167 7 6 5.1215 1.0611 2.0347 8 7 5.4109 0.7617 3.2823 9 14 6.4912 1.4539 0.8267 10 1 6.7696 2.9124 0.8513 11 1 7.7177 0.7094 1.2098 12 1 6.0752 1.0523 -0.5410 13 6 1.6277 2.0820 -1.2321 14 1 0.6195 1.7798 -1.5156 15 6 2.6028 1.7210 -2.3546 16 7 2.5932 0.2668 -2.5625 17 6 1.6591 3.5705 -0.9990 18 6 0.8136 4.4511 -1.5365 19 6 1.0354 5.7686 -1.1746 20 6 2.0666 5.9591 -0.3502 21 6 2.5167 7.2944 0.1840 22 16 2.8210 4.4133 0.0175 23 1 -0.3634 -1.0216 0.1109 24 1 -0.3633 0.6069 0.8295 25 1 -0.3633 0.4149 -0.9401 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 3.8419 2.4297 -0.0383 29 1 3.9504 0.7081 -0.4772 30 1 6.3355 0.7445 3.5750 31 1 2.2996 2.2215 -3.2742 32 1 3.6076 2.0422 -2.0803 33 1 1.6599 -0.0649 -2.7548 34 1 3.2301 0.0027 -3.2993 35 1 0.0146 4.1580 -2.2015 36 1 0.4223 6.5813 -1.5353 37 1 3.3807 7.1534 0.8334 38 1 2.7887 7.9452 -0.6471 39 1 1.7061 7.7504 0.7523 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043242863.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:41 Heat of formation + Delta-G solvation = 45.454427 kcal Electronic energy + Delta-G solvation = -19232.080612 eV Core-core repulsion = 16494.674945 eV Total energy + Delta-G solvation = -2737.405668 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.70022 -37.10641 -33.49720 -32.39312 -32.04888 -30.25904 -28.77076 -26.21702 -24.83834 -22.72371 -22.10983 -21.84897 -19.32581 -18.37529 -17.05184 -16.37152 -15.57481 -15.18904 -14.85104 -14.26038 -13.87242 -13.71841 -13.68011 -13.40259 -13.07304 -12.87447 -12.42678 -12.18901 -12.08631 -11.84863 -11.61954 -11.28052 -11.13228 -10.96193 -10.89025 -10.58225 -10.36374 -9.94990 -9.82517 -9.69509 -9.16339 -8.60652 -8.46836 -8.01293 -7.88925 -7.04839 -5.97262 -3.91891 1.46232 2.18403 2.63615 3.11174 3.32216 3.39433 3.41938 4.48373 4.62359 4.81216 5.19153 5.24174 5.35925 5.46655 5.50167 5.53055 5.67686 5.70036 5.79864 5.84917 5.91869 6.02259 6.09146 6.12114 6.24809 6.49299 6.56763 6.67860 6.76839 6.90629 6.94695 7.03726 7.16144 7.28893 7.53940 7.71606 8.00980 8.17363 8.75821 9.14163 9.65639 11.16308 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014094 B = 0.009241 C = 0.006806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.144736 B = 3029.318755 C = 4113.043562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.040 3.960 3 N -0.511 5.511 4 C 0.163 3.837 5 C -0.498 4.498 6 H 0.080 0.920 7 C 0.070 3.930 8 N -0.902 5.902 9 Si 0.862 3.138 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.266 1.266 13 C 0.144 3.856 14 H 0.088 0.912 15 C 0.036 3.964 16 N -0.834 5.834 17 C -0.155 4.155 18 C -0.153 4.153 19 C -0.147 4.147 20 C -0.227 4.227 21 C -0.077 4.077 22 S 0.189 5.811 23 H 0.048 0.952 24 H 0.056 0.944 25 H 0.039 0.961 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.015 0.985 29 H 0.015 0.985 30 H 0.262 0.738 31 H 0.023 0.977 32 H 0.078 0.922 33 H 0.337 0.663 34 H 0.336 0.664 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.810 6.191 -12.295 15.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.088 4.088 3 N -0.234 5.234 4 C 0.036 3.964 5 C -0.536 4.536 6 H 0.098 0.902 7 C -0.131 4.131 8 N -0.541 5.541 9 Si 0.689 3.311 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.190 1.190 13 C 0.032 3.968 14 H 0.106 0.894 15 C -0.097 4.097 16 N -0.365 5.365 17 C -0.275 4.275 18 C -0.184 4.184 19 C -0.178 4.178 20 C -0.345 4.345 21 C -0.135 4.135 22 S 0.455 5.545 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.058 0.942 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.032 0.968 29 H 0.032 0.968 30 H 0.072 0.928 31 H 0.041 0.959 32 H 0.097 0.903 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.366 5.930 -10.116 13.343 hybrid contribution -0.403 0.565 -3.026 3.104 sum -6.769 6.495 -13.142 16.147 Atomic orbital electron populations 1.21868 0.97420 1.00417 1.00779 1.22304 0.93105 0.89926 1.03419 1.62312 1.15967 1.15364 1.29739 1.20289 0.83370 0.94633 0.98074 1.21032 0.93189 1.45627 0.93795 0.90235 1.24836 0.98260 0.95197 0.94791 1.69893 1.18773 1.49842 1.15639 0.87045 0.82512 0.78903 0.82597 1.20083 1.21276 1.19045 1.20206 0.98521 0.87647 0.90403 0.89413 1.22582 1.01783 0.88077 0.97277 1.58839 1.13192 1.12873 1.51552 1.24489 1.01163 0.98734 1.03076 1.19817 1.01763 0.92359 1.04432 1.19784 0.99576 0.96825 1.01587 1.25079 1.02988 1.01198 1.05198 1.20221 1.01261 0.91593 1.00454 1.85420 1.29726 0.93622 1.45722 0.93280 0.92523 0.94241 0.91297 0.90241 0.96793 0.96778 0.92849 0.95897 0.90345 0.85027 0.85050 0.85520 0.85765 0.91697 0.91431 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.70 37.16 0.36 -1.90 16 2 C 0.04 0.76 5.32 -3.82 -0.02 0.74 16 3 N -0.51 -10.45 4.24 -229.48 -0.97 -11.43 16 4 C 0.16 3.88 1.90 -4.97 -0.01 3.87 16 5 C -0.50 -14.10 9.06 -34.44 -0.31 -14.41 16 6 H 0.08 2.49 7.85 -52.49 -0.41 2.08 16 7 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 8 N -0.90 -27.82 13.96 55.43 0.77 -27.04 16 9 Si 0.86 21.66 27.47 -169.99 -4.67 16.99 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 13 C 0.14 2.45 2.35 -68.87 -0.16 2.29 16 14 H 0.09 1.36 5.83 -51.93 -0.30 1.05 16 15 C 0.04 0.56 5.51 -3.82 -0.02 0.54 16 16 N -0.83 -11.61 6.35 -10.37 -0.07 -11.68 16 17 C -0.16 -2.71 5.45 -36.01 -0.20 -2.91 16 18 C -0.15 -2.33 10.05 -41.21 -0.41 -2.75 16 19 C -0.15 -2.16 10.05 -41.21 -0.41 -2.58 16 20 C -0.23 -3.57 6.51 -36.00 -0.23 -3.80 16 21 C -0.08 -0.96 10.38 36.00 0.37 -0.59 16 22 S 0.19 3.58 19.94 -107.50 -2.14 1.44 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 25 H 0.04 0.53 6.42 -51.93 -0.33 0.20 16 26 H 0.07 1.21 4.87 -51.93 -0.25 0.96 16 27 H 0.08 1.73 7.20 -51.93 -0.37 1.36 16 28 H 0.01 0.35 3.87 -39.13 -0.15 0.20 16 29 H 0.01 0.36 5.87 -51.93 -0.30 0.05 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 1.44 6.50 -51.93 -0.34 1.10 16 33 H 0.34 3.98 8.43 -39.29 -0.33 3.65 16 34 H 0.34 4.04 9.08 -39.29 -0.36 3.69 16 35 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 36 H 0.12 1.52 8.06 -52.48 -0.42 1.09 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 313.62 15.07 4.73 4.73 Total: -1.00 -31.00 313.62 -9.20 -40.20 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -5.71 Total: 6.36 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -1.15 Total: -19.56 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -0.26 Total: -50.15 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Atomic # 16 Polarization: 3.58 SS G_CDS: -2.14 Total: 1.44 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.00 -9.20 -40.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043242863.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.654 kcal (2) G-P(sol) polarization free energy of solvation -30.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds