Wall clock time and date at job start Mon Mar 30 2020 06:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.47411 * 2 1 4 4 C 1.46897 * 111.00352 * 172.07708 * 3 2 1 5 5 C 1.50707 * 109.47164 * 287.25648 * 4 3 2 6 6 H 1.07999 * 119.99895 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99820 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00008 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99996 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47196 * 90.00375 * 9 7 5 11 11 H 1.48510 * 109.47014 * 209.99742 * 9 7 5 12 12 H 1.48493 * 109.47390 * 329.99854 * 9 7 5 13 13 C 1.46892 * 111.00388 * 296.03896 * 3 2 1 14 14 H 1.09002 * 109.47539 * 38.45254 * 13 3 2 15 15 C 1.53007 * 109.47007 * 278.45994 * 13 3 2 16 16 N 1.46896 * 109.46820 * 58.80462 * 15 13 3 17 17 C 1.50694 * 109.47649 * 158.46128 * 13 3 2 18 18 C 1.33391 * 125.20737 * 215.36168 * 17 13 3 19 19 C 1.38417 * 114.92374 * 179.85839 * 18 17 13 20 20 C 1.33391 * 114.92347 * 0.42783 * 19 18 17 21 21 C 1.50695 * 125.20460 * 179.75365 * 20 19 18 22 22 S 1.75887 * 109.59118 * 359.77310 * 20 19 18 23 23 H 1.08998 * 109.47295 * 186.19662 * 1 2 3 24 24 H 1.09008 * 109.46660 * 306.19083 * 1 2 3 25 25 H 1.08994 * 109.47280 * 66.18638 * 1 2 3 26 26 H 1.09003 * 109.46978 * 240.00516 * 2 1 3 27 27 H 1.08998 * 109.47471 * 120.00145 * 2 1 3 28 28 H 1.08993 * 109.47309 * 167.25466 * 4 3 2 29 29 H 1.09003 * 109.47057 * 47.24891 * 4 3 2 30 30 H 0.97000 * 119.99756 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47335 * 178.80829 * 15 13 3 32 32 H 1.08998 * 109.47128 * 298.81016 * 15 13 3 33 33 H 1.00905 * 111.00144 * 56.05213 * 16 15 13 34 34 H 1.00904 * 111.00142 * 180.02562 * 16 15 13 35 35 H 1.08003 * 122.53504 * 0.02562 * 18 17 13 36 36 H 1.08005 * 122.53885 * 180.20128 * 19 18 17 37 37 H 1.09005 * 109.47109 * 179.97438 * 21 20 19 38 38 H 1.09001 * 109.47172 * 299.99596 * 21 20 19 39 39 H 1.08997 * 109.47654 * 59.99946 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4758 1.4285 0.1890 5 6 3.8073 1.0849 1.6185 6 1 3.0155 0.8574 2.3167 7 6 5.1215 1.0611 2.0347 8 7 5.4109 0.7617 3.2823 9 14 6.4912 1.4539 0.8267 10 1 6.7696 2.9124 0.8513 11 1 7.7177 0.7094 1.2098 12 1 6.0752 1.0523 -0.5410 13 6 1.6277 2.0820 -1.2321 14 1 0.6195 1.7798 -1.5156 15 6 2.6028 1.7210 -2.3546 16 7 2.5932 0.2668 -2.5625 17 6 1.6591 3.5705 -0.9990 18 6 0.8136 4.4511 -1.5365 19 6 1.0354 5.7686 -1.1746 20 6 2.0666 5.9591 -0.3502 21 6 2.5167 7.2944 0.1840 22 16 2.8210 4.4133 0.0175 23 1 -0.3634 -1.0216 0.1109 24 1 -0.3633 0.6069 0.8295 25 1 -0.3633 0.4149 -0.9401 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 3.8419 2.4297 -0.0383 29 1 3.9504 0.7081 -0.4772 30 1 6.3355 0.7445 3.5750 31 1 2.2996 2.2215 -3.2742 32 1 3.6076 2.0422 -2.0803 33 1 1.6599 -0.0649 -2.7548 34 1 3.2301 0.0027 -3.2993 35 1 0.0146 4.1580 -2.2015 36 1 0.4223 6.5813 -1.5353 37 1 3.3807 7.1534 0.8334 38 1 2.7887 7.9452 -0.6471 39 1 1.7061 7.7504 0.7523 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043242863.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:41 Heat of formation + Delta-G solvation = 23.281472 kcal Electronic energy + Delta-G solvation = -19233.042104 eV Core-core repulsion = 16494.674945 eV Total energy + Delta-G solvation = -2738.367159 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.09612 -38.36474 -35.09378 -34.26564 -33.21966 -31.79292 -30.24460 -27.86930 -26.03668 -24.09041 -23.82803 -23.18701 -20.80065 -19.66222 -19.04643 -17.76818 -16.85750 -16.77793 -16.33059 -15.68663 -15.42844 -15.11358 -15.01942 -14.67691 -14.54298 -14.33151 -13.94575 -13.66202 -13.33902 -13.13252 -12.91655 -12.82718 -12.49968 -12.44411 -12.32740 -12.29997 -11.94122 -11.76990 -11.44954 -11.34599 -11.04251 -10.64983 -9.81090 -9.28026 -9.22782 -8.55150 -8.23850 -6.22454 0.23044 0.88563 1.31081 1.31594 1.37739 1.42304 1.94652 2.34935 3.10882 3.36623 3.50991 3.95887 4.10968 4.22664 4.29249 4.46793 4.47566 4.51298 4.66617 4.72810 4.77717 4.80299 4.83946 4.98389 5.02814 5.12663 5.19517 5.25300 5.37701 5.41765 5.46812 5.59089 5.67777 5.80112 6.09551 6.17855 6.55725 6.61254 6.78232 6.83519 7.39145 8.93683 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014094 B = 0.009241 C = 0.006806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.144736 B = 3029.318755 C = 4113.043562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.040 3.960 3 N -0.528 5.528 4 C 0.182 3.818 5 C -0.497 4.497 6 H 0.031 0.969 7 C 0.011 3.989 8 N -0.951 5.951 9 Si 0.928 3.072 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.251 1.251 13 C 0.147 3.853 14 H 0.112 0.888 15 C 0.044 3.956 16 N -0.846 5.846 17 C -0.169 4.169 18 C -0.137 4.137 19 C -0.146 4.146 20 C -0.214 4.214 21 C -0.078 4.078 22 S 0.076 5.924 23 H 0.068 0.932 24 H 0.038 0.962 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.033 0.967 28 H 0.021 0.979 29 H 0.006 0.994 30 H 0.263 0.737 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.351 0.649 34 H 0.349 0.651 35 H 0.160 0.840 36 H 0.160 0.840 37 H 0.055 0.945 38 H 0.091 0.909 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.393 7.634 -15.658 19.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.087 4.087 3 N -0.251 5.251 4 C 0.054 3.946 5 C -0.536 4.536 6 H 0.049 0.951 7 C -0.185 4.185 8 N -0.592 5.592 9 Si 0.752 3.248 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.174 1.174 13 C 0.036 3.964 14 H 0.129 0.871 15 C -0.088 4.088 16 N -0.379 5.379 17 C -0.288 4.288 18 C -0.168 4.168 19 C -0.176 4.176 20 C -0.331 4.331 21 C -0.137 4.137 22 S 0.341 5.659 23 H 0.087 0.913 24 H 0.057 0.943 25 H 0.085 0.915 26 H 0.102 0.898 27 H 0.052 0.948 28 H 0.038 0.962 29 H 0.023 0.977 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.166 0.834 34 H 0.163 0.837 35 H 0.178 0.822 36 H 0.178 0.822 37 H 0.074 0.926 38 H 0.110 0.890 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.978 7.364 -13.510 17.332 hybrid contribution -0.075 0.185 -1.966 1.976 sum -8.053 7.549 -15.476 19.009 Atomic orbital electron populations 1.21763 0.94407 1.01651 1.01462 1.22309 0.95539 0.89031 1.01848 1.62150 1.13659 1.16504 1.32830 1.19912 0.85858 0.94464 0.94362 1.21274 0.92079 1.44650 0.95608 0.95063 1.25677 1.01021 0.95246 0.96565 1.70052 1.19437 1.51866 1.17892 0.85985 0.79057 0.79038 0.80701 1.19211 1.20738 1.17434 1.20291 0.99837 0.87172 0.89130 0.87076 1.22367 0.99628 0.89202 0.97652 1.58698 1.14619 1.12009 1.52597 1.24524 1.01408 0.99057 1.03800 1.20234 1.01107 0.92136 1.03279 1.20200 0.99152 0.97650 1.00552 1.25287 1.02644 1.00045 1.05137 1.20347 1.01569 0.90373 1.01361 1.85710 1.33274 0.98067 1.48891 0.91289 0.94300 0.91467 0.89796 0.94837 0.96154 0.97674 0.92757 0.93313 0.93391 0.83396 0.83653 0.82211 0.82236 0.92552 0.89037 0.89516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 9.70 71.98 0.70 -3.23 16 2 C 0.04 1.52 5.32 86.30 0.46 1.98 16 3 N -0.53 -21.79 4.24 -879.93 -3.73 -25.52 16 4 C 0.18 8.85 1.90 85.56 0.16 9.01 16 5 C -0.50 -29.75 9.06 25.60 0.23 -29.51 16 6 H 0.03 2.11 7.85 -2.91 -0.02 2.09 16 7 C 0.01 0.69 5.47 84.65 0.46 1.15 16 8 N -0.95 -61.46 13.96 21.45 0.30 -61.17 16 9 Si 0.93 45.98 27.47 68.60 1.88 47.86 16 10 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 12 H -0.25 -11.68 6.54 99.48 0.65 -11.03 16 13 C 0.15 4.71 2.35 44.17 0.10 4.81 16 14 H 0.11 3.01 5.83 -2.39 -0.01 3.00 16 15 C 0.04 1.29 5.51 86.31 0.48 1.76 16 16 N -0.85 -21.51 6.35 -186.72 -1.19 -22.69 16 17 C -0.17 -5.60 5.45 24.59 0.13 -5.47 16 18 C -0.14 -3.65 10.05 21.22 0.21 -3.44 16 19 C -0.15 -3.72 10.05 21.22 0.21 -3.51 16 20 C -0.21 -6.27 6.51 24.59 0.16 -6.11 16 21 C -0.08 -1.76 10.38 71.23 0.74 -1.03 16 22 S 0.08 2.89 19.94 -56.49 -1.13 1.76 16 23 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 25 H 0.07 1.57 6.42 -2.39 -0.02 1.56 16 26 H 0.08 2.87 4.87 -2.39 -0.01 2.86 16 27 H 0.03 1.54 7.20 -2.39 -0.02 1.52 16 28 H 0.02 1.02 3.87 -10.53 -0.04 0.98 16 29 H 0.01 0.28 5.87 -2.39 -0.01 0.26 16 30 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 31 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.05 1.70 6.50 -2.39 -0.02 1.69 16 33 H 0.35 7.11 8.43 -89.69 -0.76 6.35 16 34 H 0.35 7.50 9.08 -89.69 -0.81 6.69 16 35 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 36 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 37 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -71.92 313.62 -0.40 -72.32 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: -0.59 Total: 21.02 kcal Atomic # 6 Polarization: -37.63 SS G_CDS: 4.05 Total: -33.58 kcal Atomic # 7 Polarization: -104.76 SS G_CDS: -4.62 Total: -109.38 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.88 Total: 47.86 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -1.13 Total: 1.76 kcal Total: -71.92 -0.40 -72.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043242863.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.597 kcal (2) G-P(sol) polarization free energy of solvation -71.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds