Wall clock time and date at job start Mon Mar 30 2020 06:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46916 * 2 1 4 4 H 1.08996 * 109.46805 * 179.82088 * 3 2 1 5 5 C 1.50700 * 109.46918 * 299.81722 * 3 2 1 6 6 H 1.08004 * 119.99899 * 116.36878 * 5 3 2 7 7 C 1.37878 * 120.00291 * 296.37009 * 5 3 2 8 8 N 1.31511 * 119.99861 * 353.09968 * 7 5 3 9 9 Si 1.86802 * 120.00123 * 173.10439 * 7 5 3 10 10 H 1.48506 * 109.46736 * 269.99832 * 9 7 5 11 11 H 1.48504 * 109.47068 * 29.99609 * 9 7 5 12 12 H 1.48501 * 109.47236 * 149.99932 * 9 7 5 13 13 N 1.46898 * 109.47311 * 59.81686 * 3 2 1 14 14 C 1.46901 * 110.99686 * 88.27269 * 13 3 2 15 15 H 1.09004 * 109.47481 * 328.34538 * 14 13 3 16 16 C 1.52998 * 109.47050 * 88.34682 * 14 13 3 17 17 C 1.50701 * 109.47058 * 208.34607 * 14 13 3 18 18 N 1.31784 * 122.74905 * 314.71390 * 17 14 13 19 19 C 1.29031 * 117.12173 * 179.75358 * 18 17 14 20 20 C 1.50698 * 124.91322 * 180.22788 * 19 18 17 21 21 S 1.70971 * 110.16845 * 0.48765 * 19 18 17 22 22 C 1.33640 * 122.75216 * 135.00154 * 17 14 13 23 23 C 1.50703 * 126.03527 * 0.02562 * 22 17 14 24 24 H 1.08997 * 109.46794 * 185.07346 * 1 2 3 25 25 H 1.09003 * 109.46802 * 305.06898 * 1 2 3 26 26 H 1.08993 * 109.47588 * 65.07148 * 1 2 3 27 27 H 1.08996 * 109.46730 * 240.00337 * 2 1 3 28 28 H 1.08995 * 109.47227 * 119.99982 * 2 1 3 29 29 H 0.96998 * 119.99916 * 355.41538 * 8 7 5 30 30 H 1.00895 * 111.00169 * 212.22710 * 13 3 2 31 31 H 1.09002 * 109.46963 * 299.99628 * 16 14 13 32 32 H 1.08999 * 109.47102 * 60.00098 * 16 14 13 33 33 H 1.08997 * 109.47207 * 180.02562 * 16 14 13 34 34 H 1.08995 * 109.47200 * 180.27921 * 20 19 18 35 35 H 1.09008 * 109.46915 * 300.27263 * 20 19 18 36 36 H 1.08994 * 109.47652 * 60.27634 * 20 19 18 37 37 H 1.08996 * 109.47499 * 89.99488 * 23 22 17 38 38 H 1.09002 * 109.47008 * 209.99939 * 23 22 17 39 39 H 1.09006 * 109.46870 * 329.99541 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1300 1.4426 0.0032 5 6 1.5413 2.1516 -1.2327 6 1 0.8726 2.9943 -1.1376 7 6 1.9387 1.7245 -2.4820 8 7 2.8559 0.7889 -2.5961 9 14 1.1745 2.4749 -4.0125 10 1 -0.0267 1.6925 -4.4004 11 1 0.7814 3.8791 -3.7319 12 1 2.1613 2.4493 -5.1220 13 7 1.5467 2.1364 1.1972 14 6 2.4677 1.9556 2.3273 15 1 2.9528 0.9826 2.2487 16 6 3.5284 3.0578 2.3021 17 6 1.6969 2.0295 3.6202 18 7 0.7926 2.9579 3.8589 19 6 0.1940 2.9160 5.0012 20 6 -0.8688 3.8837 5.4540 21 16 0.7862 1.6081 5.9295 22 6 1.8785 1.1625 4.6208 23 6 2.8470 0.0078 4.6286 24 1 -0.3633 -1.0236 0.0909 25 1 -0.3633 0.5905 0.8411 26 1 -0.3634 0.4331 -0.9318 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.3004 0.4465 -1.8049 30 1 1.3922 3.1156 1.0097 31 1 4.0859 3.0043 1.3670 32 1 3.0433 4.0308 2.3808 33 1 4.2120 2.9235 3.1403 34 1 -1.1971 3.6188 6.4590 35 1 -0.4611 4.8947 5.4597 36 1 -1.7169 3.8379 4.7709 37 1 3.8052 0.3400 5.0279 38 1 2.4515 -0.7938 5.2524 39 1 2.9845 -0.3578 3.6109 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054182818.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:59 Heat of formation + Delta-G solvation = 5.087349 kcal Electronic energy + Delta-G solvation = -18936.596396 eV Core-core repulsion = 16197.440281 eV Total energy + Delta-G solvation = -2739.156116 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.07252 -38.49810 -35.69350 -33.96353 -32.89410 -31.11406 -30.20304 -27.34697 -26.69114 -25.46885 -24.60351 -22.84964 -21.17459 -19.84258 -18.97164 -18.49372 -16.61221 -16.20274 -15.99961 -15.62909 -15.47263 -15.09351 -14.63026 -14.37535 -14.28555 -14.13660 -13.92613 -13.77772 -13.55705 -13.18476 -12.98049 -12.94555 -12.85938 -12.65751 -12.34137 -12.05109 -11.98979 -11.95389 -11.71055 -11.53875 -10.55517 -10.48142 -10.38327 -10.06718 -9.47416 -9.04747 -8.54828 -6.25922 -0.18489 0.46066 0.77776 1.53986 1.61056 1.78566 1.89269 2.58040 3.21647 3.24999 3.57164 3.91404 4.04219 4.13102 4.21838 4.32696 4.40948 4.51268 4.56619 4.62550 4.66473 4.69333 4.71556 4.81198 4.94164 4.96338 5.06918 5.09132 5.11963 5.19339 5.35927 5.37994 5.56929 5.66593 5.91692 6.12168 6.51051 6.65062 6.82976 6.98598 7.51422 8.81640 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.026639 B = 0.005148 C = 0.004897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.830353 B = 5437.318676 C = 5716.192017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.099 4.099 3 C 0.212 3.788 4 H -0.032 1.032 5 C -0.597 4.597 6 H 0.043 0.957 7 C -0.020 4.020 8 N -0.933 5.933 9 Si 1.109 2.891 10 H -0.277 1.277 11 H -0.275 1.275 12 H -0.286 1.286 13 N -0.662 5.662 14 C 0.155 3.845 15 H 0.079 0.921 16 C -0.159 4.159 17 C 0.074 3.926 18 N -0.485 5.485 19 C 0.029 3.971 20 C -0.072 4.072 21 S 0.141 5.859 22 C -0.239 4.239 23 C -0.074 4.074 24 H 0.039 0.961 25 H 0.049 0.951 26 H 0.034 0.966 27 H 0.036 0.964 28 H 0.031 0.969 29 H 0.259 0.741 30 H 0.333 0.667 31 H 0.045 0.955 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.317 1.761 18.935 19.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.138 4.138 3 C 0.103 3.897 4 H -0.015 1.015 5 C -0.635 4.635 6 H 0.062 0.938 7 C -0.220 4.220 8 N -0.571 5.571 9 Si 0.932 3.068 10 H -0.203 1.203 11 H -0.200 1.200 12 H -0.212 1.212 13 N -0.291 5.291 14 C 0.042 3.958 15 H 0.097 0.903 16 C -0.218 4.218 17 C -0.058 4.058 18 N -0.200 5.200 19 C -0.249 4.249 20 C -0.132 4.132 21 S 0.396 5.604 22 C -0.361 4.361 23 C -0.133 4.133 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.151 0.849 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.144 1.200 18.125 18.631 hybrid contribution 1.428 0.566 0.241 1.554 sum -2.717 1.765 18.365 18.649 Atomic orbital electron populations 1.21260 0.95549 0.98707 1.00791 1.21376 0.97056 0.97644 0.97707 1.19054 0.90752 0.92038 0.87867 1.01501 1.22245 1.31114 1.17162 0.92992 0.93835 1.26908 0.95491 0.95443 1.04120 1.70864 1.24653 1.28430 1.33122 0.83025 0.75551 0.75682 0.72526 1.20303 1.20036 1.21160 1.60448 1.46276 1.17269 1.05154 1.20051 0.90047 0.98601 0.87068 0.90324 1.22267 0.98979 0.98945 1.01585 1.20026 0.96794 0.92291 0.96697 1.65972 1.09033 1.26042 1.18969 1.27573 1.02994 1.01480 0.92853 1.20532 0.93829 0.96276 1.02534 1.83355 1.32550 1.25749 1.18743 1.25938 1.07093 1.05314 0.97713 1.20321 0.96459 0.93116 1.03390 0.94203 0.93159 0.94719 0.94539 0.95037 0.93024 0.84891 0.93624 0.92756 0.90998 0.87874 0.88994 0.89555 0.89186 0.89499 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.80 9.48 71.98 0.68 -4.12 16 2 C -0.10 -4.80 5.50 30.60 0.17 -4.63 16 3 C 0.21 10.70 1.73 44.17 0.08 10.78 16 4 H -0.03 -1.78 6.78 -2.39 -0.02 -1.80 16 5 C -0.60 -33.19 7.36 25.60 0.19 -33.00 16 6 H 0.04 2.46 7.61 -2.91 -0.02 2.44 16 7 C -0.02 -1.16 5.23 84.66 0.44 -0.71 16 8 N -0.93 -55.96 12.82 21.45 0.28 -55.69 16 9 Si 1.11 50.84 29.91 68.60 2.05 52.89 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 13 N -0.66 -29.33 5.13 -477.15 -2.45 -31.77 16 14 C 0.16 5.83 2.67 44.17 0.12 5.94 16 15 H 0.08 2.98 5.55 -2.38 -0.01 2.97 16 16 C -0.16 -5.49 9.13 71.98 0.66 -4.84 16 17 C 0.07 2.50 5.63 41.52 0.23 2.73 16 18 N -0.49 -16.48 10.44 -179.40 -1.87 -18.36 16 19 C 0.03 0.76 7.39 88.52 0.65 1.42 16 20 C -0.07 -1.26 10.47 71.24 0.75 -0.52 16 21 S 0.14 3.16 23.17 -56.49 -1.31 1.85 16 22 C -0.24 -6.70 6.59 24.64 0.16 -6.53 16 23 C -0.07 -1.64 10.04 71.24 0.72 -0.93 16 24 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.05 2.28 7.44 -2.39 -0.02 2.26 16 26 H 0.03 1.68 7.41 -2.39 -0.02 1.67 16 27 H 0.04 1.94 6.18 -2.39 -0.01 1.92 16 28 H 0.03 1.39 7.73 -2.39 -0.02 1.37 16 29 H 0.26 15.72 6.08 -92.71 -0.56 15.16 16 30 H 0.33 15.53 7.85 -89.70 -0.70 14.82 16 31 H 0.04 1.71 7.73 -2.39 -0.02 1.70 16 32 H 0.05 1.91 8.12 -2.39 -0.02 1.89 16 33 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.10 1.18 8.12 -2.39 -0.02 1.16 16 35 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.07 1.71 6.66 -2.38 -0.02 1.70 16 Total: -1.00 -65.37 326.14 2.09 -63.28 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 0.54 Total: 22.20 kcal Atomic # 6 Polarization: -39.25 SS G_CDS: 4.85 Total: -34.40 kcal Atomic # 7 Polarization: -101.77 SS G_CDS: -4.04 Total: -105.81 kcal Atomic # 14 Polarization: 50.84 SS G_CDS: 2.05 Total: 52.89 kcal Atomic # 16 Polarization: 3.16 SS G_CDS: -1.31 Total: 1.85 kcal Total: -65.37 2.09 -63.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182818.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.371 kcal (2) G-P(sol) polarization free energy of solvation -65.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds