Wall clock time and date at job start Mon Mar 30 2020 06:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47643 * 2 1 4 4 H 1.09005 * 109.47104 * 305.03204 * 3 2 1 5 5 C 1.50692 * 109.47416 * 185.03290 * 3 2 1 6 6 H 1.08000 * 120.00919 * 239.99655 * 5 3 2 7 7 C 1.37888 * 120.00056 * 59.99812 * 5 3 2 8 8 N 1.31515 * 119.99419 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00216 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47166 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47037 * 119.99879 * 9 7 5 12 12 H 1.48491 * 109.47235 * 240.00093 * 9 7 5 13 13 N 1.46900 * 109.47209 * 65.03087 * 3 2 1 14 14 C 1.46904 * 110.99867 * 205.75343 * 13 3 2 15 15 H 1.08992 * 109.47608 * 326.19639 * 14 13 3 16 16 C 1.53007 * 109.46792 * 86.19895 * 14 13 3 17 17 C 1.50703 * 109.47005 * 206.19223 * 14 13 3 18 18 N 1.31781 * 122.75357 * 315.00453 * 17 14 13 19 19 C 1.29026 * 117.12699 * 179.97438 * 18 17 14 20 20 C 1.50691 * 124.91670 * 180.02562 * 19 18 17 21 21 S 1.70977 * 110.16547 * 0.02562 * 19 18 17 22 22 C 1.33637 * 122.74627 * 135.00243 * 17 14 13 23 23 C 1.50700 * 126.03923 * 0.03887 * 22 17 14 24 24 H 1.09006 * 109.47061 * 298.07865 * 1 2 3 25 25 H 1.09003 * 109.46763 * 58.06922 * 1 2 3 26 26 H 1.08999 * 109.47421 * 178.07018 * 1 2 3 27 27 H 1.08994 * 109.47090 * 239.99286 * 2 1 3 28 28 H 1.09006 * 109.46829 * 119.99794 * 2 1 3 29 29 H 0.97004 * 119.99511 * 179.97438 * 8 7 5 30 30 H 1.00898 * 111.00146 * 81.80657 * 13 3 2 31 31 H 1.08994 * 109.47173 * 54.10703 * 16 14 13 32 32 H 1.09005 * 109.46991 * 174.10970 * 16 14 13 33 33 H 1.09000 * 109.46955 * 294.10405 * 16 14 13 34 34 H 1.09003 * 109.47394 * 179.97438 * 20 19 18 35 35 H 1.08991 * 109.47589 * 299.98970 * 20 19 18 36 36 H 1.09003 * 109.47116 * 59.98835 * 20 19 18 37 37 H 1.08999 * 109.47334 * 179.97438 * 23 22 17 38 38 H 1.09003 * 109.46968 * 299.97867 * 23 22 17 39 39 H 1.08999 * 109.47452 * 59.97874 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6051 1.9816 -0.8415 5 6 3.5419 1.4441 -0.1246 6 1 4.1477 1.8885 0.6511 7 6 4.1427 0.8784 -1.2293 8 7 3.4050 0.3376 -2.1743 9 14 6.0042 0.8812 -1.3842 10 1 6.5987 1.5459 -0.1968 11 1 6.4962 -0.5176 -1.4658 12 1 6.3976 1.6168 -2.6126 13 7 1.6522 2.0990 1.2555 14 6 1.5561 3.5544 1.0806 15 1 2.3034 3.8838 0.3590 16 6 0.1598 3.9155 0.5697 17 6 1.7992 4.2363 2.4024 18 7 1.2463 3.8290 3.5271 19 6 1.5300 4.4930 4.5964 20 6 0.9985 4.1817 5.9716 21 16 2.5965 5.7773 4.2270 22 6 2.5931 5.3037 2.5299 23 6 3.3512 5.9826 1.4184 24 1 -0.3633 0.4837 0.9068 25 1 -0.3633 0.5435 -0.8722 26 1 -0.3634 -1.0270 -0.0346 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8276 -0.0601 -2.9516 30 1 2.2935 1.8658 1.9987 31 1 -0.5916 3.4951 1.2380 32 1 0.0531 4.9999 0.5394 33 1 0.0231 3.5088 -0.4323 34 1 1.3993 4.8995 6.6873 35 1 -0.0896 4.2453 5.9636 36 1 1.3014 3.1747 6.2589 37 1 3.9126 6.8248 1.8231 38 1 4.0404 5.2722 0.9619 39 1 2.6489 6.3421 0.6663 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182820.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:03 Heat of formation + Delta-G solvation = 23.919900 kcal Electronic energy + Delta-G solvation = -18894.887728 eV Core-core repulsion = 16156.548253 eV Total energy + Delta-G solvation = -2738.339475 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.83640 -36.34880 -33.85038 -32.32886 -31.19716 -30.13045 -28.76472 -25.98349 -25.48701 -23.53954 -22.57573 -20.99859 -19.38366 -18.51776 -17.41150 -16.53773 -15.11376 -14.98908 -14.60267 -14.28909 -13.59902 -13.43962 -13.25537 -13.11726 -12.82558 -12.67758 -12.27708 -12.08709 -12.02367 -11.73745 -11.46711 -11.33574 -11.23369 -11.07808 -10.71585 -10.61844 -10.38888 -10.08047 -9.53863 -9.49234 -9.24174 -9.02617 -8.96876 -8.35887 -8.29188 -7.16999 -5.97965 -4.11232 0.93492 1.53104 1.90485 3.10825 3.25137 3.34042 3.37075 4.29434 4.39706 5.09440 5.14919 5.20743 5.26964 5.37022 5.46810 5.52117 5.70258 5.80891 5.93923 6.00835 6.08329 6.16704 6.34605 6.47106 6.53882 6.58696 6.61488 6.79981 6.89785 7.18377 7.25874 7.50687 7.63860 7.80469 8.07785 8.14956 8.20807 8.40058 8.72596 9.03535 9.56415 11.01425 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.018669 B = 0.006180 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.490411 B = 4529.765493 C = 5277.974302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.104 4.104 3 C 0.213 3.787 4 H 0.034 0.966 5 C -0.543 4.543 6 H 0.052 0.948 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.670 5.670 14 C 0.164 3.836 15 H 0.063 0.937 16 C -0.128 4.128 17 C 0.077 3.923 18 N -0.440 5.440 19 C 0.038 3.962 20 C -0.070 4.070 21 S 0.076 5.924 22 C -0.219 4.219 23 C -0.074 4.074 24 H 0.049 0.951 25 H 0.035 0.965 26 H 0.023 0.977 27 H 0.089 0.911 28 H 0.029 0.971 29 H 0.260 0.740 30 H 0.330 0.670 31 H 0.060 0.940 32 H 0.040 0.960 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.074 10.500 10.867 15.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.143 4.143 3 C 0.106 3.894 4 H 0.052 0.948 5 C -0.583 4.583 6 H 0.070 0.930 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.301 5.301 14 C 0.050 3.950 15 H 0.080 0.920 16 C -0.187 4.187 17 C -0.055 4.055 18 N -0.154 5.154 19 C -0.241 4.241 20 C -0.131 4.131 21 S 0.330 5.670 22 C -0.339 4.339 23 C -0.133 4.133 24 H 0.068 0.932 25 H 0.054 0.946 26 H 0.042 0.958 27 H 0.107 0.893 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.147 0.853 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.629 10.629 11.244 15.892 hybrid contribution 1.969 -0.232 -0.962 2.204 sum -1.660 10.396 10.281 14.715 Atomic orbital electron populations 1.21694 0.98961 0.98211 1.00486 1.21465 0.92163 0.99142 1.01504 1.19227 0.92630 0.91359 0.86228 0.94848 1.21921 0.92851 1.38117 1.05386 0.93020 1.24923 0.97736 0.95029 0.95738 1.69893 1.34619 1.38313 1.09379 0.86647 0.86325 0.77799 0.77877 1.19998 1.20954 1.21028 1.60935 1.55256 1.04137 1.09729 1.20000 0.97157 0.89915 0.87878 0.91953 1.21720 0.96699 0.98854 1.01398 1.20537 0.95420 0.94300 0.95223 1.66056 1.23441 1.28434 0.97427 1.26934 1.01033 0.96555 0.99573 1.20344 1.01802 1.03033 0.87904 1.83678 1.46522 1.33374 1.03418 1.25681 1.07630 1.03254 0.97377 1.20234 0.99167 0.99627 0.94253 0.93166 0.94561 0.95813 0.89261 0.95221 0.92968 0.85284 0.92105 0.94102 0.92179 0.90805 0.89726 0.89570 0.91742 0.89770 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.78 37.16 0.36 -2.53 16 2 C -0.10 -2.55 5.45 -26.73 -0.15 -2.69 16 3 C 0.21 5.29 1.78 -68.87 -0.12 5.17 16 4 H 0.03 0.91 7.25 -51.93 -0.38 0.53 16 5 C -0.54 -14.62 8.31 -34.44 -0.29 -14.91 16 6 H 0.05 1.41 7.73 -52.49 -0.41 1.00 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 8 N -0.88 -24.85 11.29 55.43 0.63 -24.23 16 9 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.67 -14.68 5.47 -102.17 -0.56 -15.24 16 14 C 0.16 3.19 2.70 -68.86 -0.19 3.01 16 15 H 0.06 1.30 6.60 -51.93 -0.34 0.96 16 16 C -0.13 -2.30 9.37 37.16 0.35 -1.95 16 17 C 0.08 1.37 5.28 -84.22 -0.44 0.93 16 18 N -0.44 -7.73 10.41 -8.06 -0.08 -7.81 16 19 C 0.04 0.54 7.39 -13.46 -0.10 0.44 16 20 C -0.07 -0.71 10.47 36.00 0.38 -0.33 16 21 S 0.08 0.99 23.17 -107.50 -2.49 -1.50 16 22 C -0.22 -3.41 6.59 -35.92 -0.24 -3.65 16 23 C -0.07 -0.99 9.35 36.01 0.34 -0.65 16 24 H 0.05 1.05 7.81 -51.93 -0.41 0.64 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.09 2.41 5.95 -51.93 -0.31 2.10 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.33 7.58 7.99 -39.29 -0.31 7.27 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 1.11 7.60 -51.93 -0.39 0.71 16 34 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.08 1.23 8.02 -51.93 -0.42 0.82 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 331.63 15.07 5.00 5.00 Total: -1.00 -28.83 331.63 -9.05 -37.88 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -6.33 Total: 5.24 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -0.19 Total: -15.41 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: -0.02 Total: -47.28 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.49 Total: -1.50 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.83 -9.05 -37.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182820.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.798 kcal (2) G-P(sol) polarization free energy of solvation -28.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds