Wall clock time and date at job start Mon Mar 30 2020 06:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47643 * 2 1 4 4 H 1.09005 * 109.47104 * 305.03204 * 3 2 1 5 5 C 1.50692 * 109.47416 * 185.03290 * 3 2 1 6 6 H 1.08000 * 120.00919 * 239.99655 * 5 3 2 7 7 C 1.37888 * 120.00056 * 59.99812 * 5 3 2 8 8 N 1.31515 * 119.99419 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00216 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47166 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47037 * 119.99879 * 9 7 5 12 12 H 1.48491 * 109.47235 * 240.00093 * 9 7 5 13 13 N 1.46900 * 109.47209 * 65.03087 * 3 2 1 14 14 C 1.46904 * 110.99867 * 205.75343 * 13 3 2 15 15 H 1.08992 * 109.47608 * 326.19639 * 14 13 3 16 16 C 1.53007 * 109.46792 * 86.19895 * 14 13 3 17 17 C 1.50703 * 109.47005 * 206.19223 * 14 13 3 18 18 N 1.31781 * 122.75357 * 315.00453 * 17 14 13 19 19 C 1.29026 * 117.12699 * 179.97438 * 18 17 14 20 20 C 1.50691 * 124.91670 * 180.02562 * 19 18 17 21 21 S 1.70977 * 110.16547 * 0.02562 * 19 18 17 22 22 C 1.33637 * 122.74627 * 135.00243 * 17 14 13 23 23 C 1.50700 * 126.03923 * 0.03887 * 22 17 14 24 24 H 1.09006 * 109.47061 * 298.07865 * 1 2 3 25 25 H 1.09003 * 109.46763 * 58.06922 * 1 2 3 26 26 H 1.08999 * 109.47421 * 178.07018 * 1 2 3 27 27 H 1.08994 * 109.47090 * 239.99286 * 2 1 3 28 28 H 1.09006 * 109.46829 * 119.99794 * 2 1 3 29 29 H 0.97004 * 119.99511 * 179.97438 * 8 7 5 30 30 H 1.00898 * 111.00146 * 81.80657 * 13 3 2 31 31 H 1.08994 * 109.47173 * 54.10703 * 16 14 13 32 32 H 1.09005 * 109.46991 * 174.10970 * 16 14 13 33 33 H 1.09000 * 109.46955 * 294.10405 * 16 14 13 34 34 H 1.09003 * 109.47394 * 179.97438 * 20 19 18 35 35 H 1.08991 * 109.47589 * 299.98970 * 20 19 18 36 36 H 1.09003 * 109.47116 * 59.98835 * 20 19 18 37 37 H 1.08999 * 109.47334 * 179.97438 * 23 22 17 38 38 H 1.09003 * 109.46968 * 299.97867 * 23 22 17 39 39 H 1.08999 * 109.47452 * 59.97874 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6051 1.9816 -0.8415 5 6 3.5419 1.4441 -0.1246 6 1 4.1477 1.8885 0.6511 7 6 4.1427 0.8784 -1.2293 8 7 3.4050 0.3376 -2.1743 9 14 6.0042 0.8812 -1.3842 10 1 6.5987 1.5459 -0.1968 11 1 6.4962 -0.5176 -1.4658 12 1 6.3976 1.6168 -2.6126 13 7 1.6522 2.0990 1.2555 14 6 1.5561 3.5544 1.0806 15 1 2.3034 3.8838 0.3590 16 6 0.1598 3.9155 0.5697 17 6 1.7992 4.2363 2.4024 18 7 1.2463 3.8290 3.5271 19 6 1.5300 4.4930 4.5964 20 6 0.9985 4.1817 5.9716 21 16 2.5965 5.7773 4.2270 22 6 2.5931 5.3037 2.5299 23 6 3.3512 5.9826 1.4184 24 1 -0.3633 0.4837 0.9068 25 1 -0.3633 0.5435 -0.8722 26 1 -0.3634 -1.0270 -0.0346 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8276 -0.0601 -2.9516 30 1 2.2935 1.8658 1.9987 31 1 -0.5916 3.4951 1.2380 32 1 0.0531 4.9999 0.5394 33 1 0.0231 3.5088 -0.4323 34 1 1.3993 4.8995 6.6873 35 1 -0.0896 4.2453 5.9636 36 1 1.3014 3.1747 6.2589 37 1 3.9126 6.8248 1.8231 38 1 4.0404 5.2722 0.9619 39 1 2.6489 6.3421 0.6663 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054182820.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:02 Heat of formation + Delta-G solvation = 6.573305 kcal Electronic energy + Delta-G solvation = -18895.639933 eV Core-core repulsion = 16156.548253 eV Total energy + Delta-G solvation = -2739.091680 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.07880 -38.10434 -35.37808 -33.95270 -32.96540 -31.10792 -30.44926 -27.87911 -26.72661 -25.03782 -24.18053 -22.38698 -21.30900 -19.73292 -18.84740 -18.41344 -16.83781 -16.37688 -16.03157 -15.86636 -15.23068 -14.82983 -14.57157 -14.30054 -14.16177 -13.91288 -13.75919 -13.55595 -13.22050 -13.11442 -12.98964 -12.94246 -12.85194 -12.78168 -12.50848 -12.38801 -12.06818 -11.74680 -11.50418 -11.35677 -10.97337 -10.45625 -10.41532 -10.09412 -9.47065 -9.01763 -8.04924 -6.27426 -0.20294 0.44277 0.76366 1.35108 1.38189 1.47779 1.87028 2.39131 3.13909 3.21106 3.67232 3.91854 4.13581 4.22081 4.44432 4.54183 4.59862 4.62931 4.66582 4.72609 4.77903 4.80252 4.91025 4.94606 5.03189 5.07086 5.10715 5.19853 5.26237 5.40544 5.43724 5.53921 5.65388 5.78133 6.10749 6.20738 6.41295 6.77382 6.97892 7.00913 7.43856 8.91230 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.018669 B = 0.006180 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.490411 B = 4529.765493 C = 5277.974302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.101 4.101 3 C 0.224 3.776 4 H 0.006 0.994 5 C -0.556 4.556 6 H 0.043 0.957 7 C 0.023 3.977 8 N -0.908 5.908 9 Si 0.947 3.053 10 H -0.273 1.273 11 H -0.280 1.280 12 H -0.278 1.278 13 N -0.663 5.663 14 C 0.164 3.836 15 H 0.042 0.958 16 C -0.118 4.118 17 C 0.052 3.948 18 N -0.479 5.479 19 C 0.030 3.970 20 C -0.071 4.071 21 S 0.144 5.856 22 C -0.236 4.236 23 C -0.073 4.073 24 H 0.053 0.947 25 H 0.032 0.968 26 H 0.043 0.957 27 H 0.063 0.937 28 H 0.022 0.978 29 H 0.262 0.738 30 H 0.323 0.677 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.681 11.820 12.565 17.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.139 4.139 3 C 0.115 3.885 4 H 0.024 0.976 5 C -0.595 4.595 6 H 0.061 0.939 7 C -0.177 4.177 8 N -0.547 5.547 9 Si 0.774 3.226 10 H -0.198 1.198 11 H -0.206 1.206 12 H -0.204 1.204 13 N -0.292 5.292 14 C 0.051 3.949 15 H 0.060 0.940 16 C -0.176 4.176 17 C -0.079 4.079 18 N -0.194 5.194 19 C -0.248 4.248 20 C -0.131 4.131 21 S 0.399 5.601 22 C -0.357 4.357 23 C -0.132 4.132 24 H 0.072 0.928 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.139 0.861 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.121 0.879 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.243 11.964 12.954 17.929 hybrid contribution 1.846 -0.575 -1.408 2.392 sum -1.396 11.389 11.546 16.278 Atomic orbital electron populations 1.21535 0.96445 0.99533 1.00470 1.21342 0.94388 0.98461 0.99752 1.18981 0.91493 0.91485 0.86555 0.97615 1.22133 0.93995 1.38082 1.05320 0.93903 1.25617 1.01877 0.94731 0.95459 1.70009 1.36224 1.38767 1.09747 0.85678 0.81298 0.77792 0.77881 1.19795 1.20608 1.20384 1.60880 1.54355 1.05953 1.07976 1.19908 0.97326 0.88390 0.89251 0.93964 1.21608 0.95615 1.00140 1.00233 1.20241 0.97384 0.95563 0.94718 1.66025 1.25101 1.30153 0.98083 1.27654 1.00558 0.96356 1.00242 1.20544 1.02423 1.04040 0.86100 1.83370 1.44878 1.31588 1.00266 1.26003 1.06889 1.02912 0.99902 1.20273 0.99038 0.99833 0.94062 0.92770 0.94884 0.93772 0.91894 0.95893 0.92839 0.86131 0.92624 0.91931 0.93499 0.87897 0.88841 0.89320 0.89149 0.91609 0.89793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.21 9.78 71.98 0.70 -4.51 16 2 C -0.10 -5.04 5.45 30.59 0.17 -4.87 16 3 C 0.22 11.46 1.78 44.16 0.08 11.54 16 4 H 0.01 0.33 7.25 -2.38 -0.02 0.32 16 5 C -0.56 -30.70 8.31 25.60 0.21 -30.49 16 6 H 0.04 2.39 7.73 -2.91 -0.02 2.37 16 7 C 0.02 1.29 5.29 84.66 0.45 1.74 16 8 N -0.91 -52.10 11.29 21.45 0.24 -51.85 16 9 Si 0.95 43.71 29.54 68.60 2.03 45.73 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 13 N -0.66 -29.83 5.47 -477.16 -2.61 -32.44 16 14 C 0.16 6.56 2.70 44.17 0.12 6.68 16 15 H 0.04 1.85 6.60 -2.39 -0.02 1.83 16 16 C -0.12 -4.27 9.37 71.98 0.67 -3.60 16 17 C 0.05 1.86 5.28 41.52 0.22 2.08 16 18 N -0.48 -16.48 10.41 -179.41 -1.87 -18.35 16 19 C 0.03 0.80 7.39 88.52 0.65 1.45 16 20 C -0.07 -1.23 10.47 71.23 0.75 -0.48 16 21 S 0.14 3.36 23.17 -56.49 -1.31 2.05 16 22 C -0.24 -7.10 6.59 24.64 0.16 -6.94 16 23 C -0.07 -1.89 9.35 71.24 0.67 -1.23 16 24 H 0.05 2.24 7.81 -2.38 -0.02 2.22 16 25 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.06 3.49 5.95 -2.39 -0.01 3.48 16 28 H 0.02 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.26 14.27 8.31 -92.70 -0.77 13.50 16 30 H 0.32 15.25 7.99 -89.70 -0.72 14.53 16 31 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.05 1.78 7.60 -2.39 -0.02 1.76 16 34 H 0.10 1.16 8.12 -2.39 -0.02 1.14 16 35 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.07 1.95 8.02 -2.39 -0.02 1.93 16 39 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -62.68 331.63 1.65 -61.03 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 0.31 Total: 22.45 kcal Atomic # 6 Polarization: -33.47 SS G_CDS: 4.85 Total: -28.62 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -4.24 Total: -102.65 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -1.31 Total: 2.05 kcal Total: -62.68 1.65 -61.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182820.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.607 kcal (2) G-P(sol) polarization free energy of solvation -62.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds