Wall clock time and date at job start Mon Mar 30 2020 06:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47074 * 2 1 4 4 H 1.08992 * 109.47049 * 54.36613 * 3 2 1 5 5 C 1.50699 * 109.46978 * 174.36868 * 3 2 1 6 6 H 1.08000 * 119.99887 * 119.99760 * 5 3 2 7 7 C 1.37874 * 120.00087 * 299.72437 * 5 3 2 8 8 N 1.31511 * 119.99857 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99856 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47137 * 90.00149 * 9 7 5 11 11 H 1.48504 * 109.46816 * 209.99723 * 9 7 5 12 12 H 1.48492 * 109.47331 * 329.99636 * 9 7 5 13 13 N 1.46907 * 109.46965 * 294.36806 * 3 2 1 14 14 C 1.46893 * 110.99592 * 155.69668 * 13 3 2 15 15 H 1.08998 * 109.47825 * 33.70866 * 14 13 3 16 16 C 1.53002 * 109.46931 * 273.70689 * 14 13 3 17 17 C 1.50703 * 109.47040 * 153.71150 * 14 13 3 18 18 N 1.31785 * 122.74950 * 45.01948 * 17 14 13 19 19 C 1.29026 * 117.12321 * 179.97438 * 18 17 14 20 20 C 1.50702 * 124.91205 * 179.97438 * 19 18 17 21 21 S 1.70977 * 110.17012 * 0.02562 * 19 18 17 22 22 C 1.33640 * 122.75083 * 224.72765 * 17 14 13 23 23 C 1.50700 * 126.03700 * 0.04139 * 22 17 14 24 24 H 1.09001 * 109.47488 * 305.66212 * 1 2 3 25 25 H 1.09004 * 109.47179 * 65.66068 * 1 2 3 26 26 H 1.08998 * 109.47414 * 185.66185 * 1 2 3 27 27 H 1.08996 * 109.47219 * 240.00015 * 2 1 3 28 28 H 1.08996 * 109.47130 * 119.99544 * 2 1 3 29 29 H 0.97001 * 119.99968 * 180.02562 * 8 7 5 30 30 H 1.00895 * 110.99759 * 31.73949 * 13 3 2 31 31 H 1.09003 * 109.46861 * 64.87497 * 16 14 13 32 32 H 1.09001 * 109.46867 * 184.87606 * 16 14 13 33 33 H 1.08998 * 109.47280 * 304.87373 * 16 14 13 34 34 H 1.09007 * 109.46997 * 90.00501 * 20 19 18 35 35 H 1.09001 * 109.46884 * 210.00036 * 20 19 18 36 36 H 1.09000 * 109.47461 * 330.00113 * 20 19 18 37 37 H 1.08996 * 109.47447 * 89.99431 * 23 22 17 38 38 H 1.09002 * 109.46778 * 210.00053 * 23 22 17 39 39 H 1.08999 * 109.47052 * 329.99675 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5966 1.9846 0.8352 5 6 3.5405 1.4448 0.1394 6 1 4.1538 1.8865 -0.6320 7 6 4.1301 0.8881 1.2545 8 7 3.3830 0.3546 2.1961 9 14 5.9901 0.8915 1.4276 10 1 6.4200 2.1302 2.1248 11 1 6.4161 -0.2931 2.2153 12 1 6.6127 0.8402 0.0805 13 7 1.6644 2.0947 -1.2617 14 6 1.5999 3.5534 -1.1013 15 1 2.3542 3.8737 -0.3827 16 6 0.2118 3.9499 -0.5945 17 6 1.8580 4.2167 -2.4297 18 7 1.2961 3.8105 -3.5505 19 6 1.5937 4.4581 -4.6260 20 6 1.0551 4.1450 -5.9982 21 16 2.6886 5.7219 -4.2694 22 6 2.6710 5.2684 -2.5668 23 6 3.4397 5.9449 -1.4611 24 1 -0.3634 0.5991 0.8349 25 1 -0.3634 0.4236 -0.9364 26 1 -0.3634 -1.0226 0.1014 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.7977 -0.0368 2.9808 30 1 0.7908 1.7303 -1.6109 31 1 0.0592 3.5410 0.4043 32 1 0.1351 5.0366 -0.5580 33 1 -0.5478 3.5546 -1.2689 34 1 0.1354 4.7061 -6.1643 35 1 1.7924 4.4250 -6.7506 36 1 0.8478 3.0774 -6.0724 37 1 4.4173 5.4742 -1.3576 38 1 3.5680 7.0004 -1.7010 39 1 2.8896 5.8493 -0.5250 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054182822.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:05 Heat of formation + Delta-G solvation = 8.163794 kcal Electronic energy + Delta-G solvation = -18892.378319 eV Core-core repulsion = 16153.355608 eV Total energy + Delta-G solvation = -2739.022711 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.00440 -38.29375 -35.39365 -34.02766 -33.01841 -31.07298 -30.15150 -27.98001 -26.73994 -25.02323 -24.26621 -22.57687 -21.46266 -19.68421 -18.54403 -18.26973 -16.88615 -16.48493 -16.00009 -15.67709 -15.43700 -14.82697 -14.46312 -14.31981 -14.22466 -14.02585 -13.85207 -13.67541 -13.40538 -13.15436 -12.93155 -12.91214 -12.85892 -12.75630 -12.56316 -12.17344 -12.03905 -11.92114 -11.55224 -11.34215 -11.02055 -10.44695 -10.40158 -10.03756 -9.40052 -8.91567 -8.05216 -6.16858 -0.14287 0.49580 0.82533 1.39312 1.41277 1.51585 1.94342 2.44091 3.19367 3.29732 3.71003 4.00907 4.16081 4.19173 4.37196 4.38882 4.51192 4.57175 4.58750 4.67329 4.70682 4.72350 4.73573 4.93968 4.98858 5.03726 5.11224 5.14319 5.19403 5.25306 5.37359 5.45373 5.61594 5.76825 5.90107 6.38553 6.53162 6.95354 7.01117 7.03464 7.52133 8.97656 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.018595 B = 0.006202 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.448158 B = 4513.389350 C = 5279.959090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.120 4.120 3 C 0.229 3.771 4 H -0.024 1.024 5 C -0.508 4.508 6 H 0.042 0.958 7 C 0.013 3.987 8 N -0.917 5.917 9 Si 0.951 3.049 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.277 1.277 13 N -0.675 5.675 14 C 0.162 3.838 15 H 0.075 0.925 16 C -0.159 4.159 17 C 0.073 3.927 18 N -0.482 5.482 19 C 0.029 3.971 20 C -0.072 4.072 21 S 0.134 5.866 22 C -0.241 4.241 23 C -0.073 4.073 24 H 0.039 0.961 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.030 0.970 28 H 0.069 0.931 29 H 0.260 0.740 30 H 0.329 0.671 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.350 11.350 -12.118 17.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.158 4.158 3 C 0.121 3.879 4 H -0.006 1.006 5 C -0.547 4.547 6 H 0.061 0.939 7 C -0.185 4.185 8 N -0.558 5.558 9 Si 0.777 3.223 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.202 1.202 13 N -0.307 5.307 14 C 0.049 3.951 15 H 0.093 0.907 16 C -0.218 4.218 17 C -0.058 4.058 18 N -0.197 5.197 19 C -0.249 4.249 20 C -0.132 4.132 21 S 0.389 5.611 22 C -0.362 4.362 23 C -0.132 4.132 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.049 0.951 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.148 0.852 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.560 11.572 -12.854 17.658 hybrid contribution 0.078 -0.701 1.817 1.949 sum -3.482 10.871 -11.038 15.879 Atomic orbital electron populations 1.21729 0.96326 1.01060 1.00350 1.21573 0.94195 0.99147 1.00911 1.18931 0.93848 0.90493 0.84648 1.00640 1.21403 0.92818 1.36702 1.03745 0.93943 1.25609 1.01941 0.95353 0.95583 1.69991 1.36073 1.40109 1.09596 0.85671 0.81181 0.77698 0.77755 1.19962 1.20780 1.20177 1.60477 1.36816 1.02341 1.31052 1.19901 0.96737 0.88705 0.89776 0.90723 1.22303 0.96811 1.02009 1.00720 1.20165 0.96655 0.94359 0.94646 1.66006 1.26285 1.29216 0.98169 1.27610 1.00228 0.96862 1.00181 1.20559 1.02367 1.04066 0.86223 1.83306 1.44045 1.33182 1.00569 1.25918 1.07009 1.03647 0.99617 1.20272 0.98720 1.00156 0.94048 0.94179 0.92899 0.92475 0.95087 0.91229 0.93051 0.85222 0.93027 0.91391 0.92323 0.88066 0.88148 0.89801 0.91166 0.88897 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.39 9.64 71.98 0.69 -4.69 16 2 C -0.12 -5.85 5.37 30.59 0.16 -5.69 16 3 C 0.23 11.75 1.84 44.17 0.08 11.84 16 4 H -0.02 -1.33 7.25 -2.39 -0.02 -1.35 16 5 C -0.51 -28.88 8.46 25.60 0.22 -28.66 16 6 H 0.04 2.50 7.81 -2.91 -0.02 2.48 16 7 C 0.01 0.75 5.29 84.65 0.45 1.20 16 8 N -0.92 -53.02 11.31 21.45 0.24 -52.78 16 9 Si 0.95 44.74 29.54 68.60 2.03 46.77 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 13 N -0.68 -30.55 5.96 -477.15 -2.84 -33.39 16 14 C 0.16 6.49 2.56 44.17 0.11 6.61 16 15 H 0.07 3.28 6.14 -2.39 -0.01 3.27 16 16 C -0.16 -5.48 9.15 71.98 0.66 -4.82 16 17 C 0.07 2.68 5.64 41.52 0.23 2.91 16 18 N -0.48 -16.92 10.43 -179.40 -1.87 -18.79 16 19 C 0.03 0.81 7.39 88.52 0.65 1.46 16 20 C -0.07 -1.29 10.46 71.24 0.75 -0.55 16 21 S 0.13 3.31 23.18 -56.49 -1.31 2.00 16 22 C -0.24 -7.57 6.59 24.64 0.16 -7.41 16 23 C -0.07 -1.97 9.81 71.24 0.70 -1.27 16 24 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.05 1.89 6.65 -2.38 -0.02 1.87 16 26 H 0.06 1.99 8.14 -2.39 -0.02 1.98 16 27 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.07 3.82 5.96 -2.39 -0.01 3.80 16 29 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 30 H 0.33 14.08 6.26 -89.70 -0.56 13.52 16 31 H 0.05 1.85 7.58 -2.39 -0.02 1.83 16 32 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.06 1.95 8.04 -2.39 -0.02 1.93 16 34 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.07 2.08 7.11 -2.39 -0.02 2.07 16 Total: -1.00 -64.96 328.32 1.59 -63.37 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.47 Total: 21.89 kcal Atomic # 6 Polarization: -33.94 SS G_CDS: 4.87 Total: -29.07 kcal Atomic # 7 Polarization: -100.49 SS G_CDS: -4.47 Total: -104.96 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -1.31 Total: 2.00 kcal Total: -64.96 1.59 -63.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182822.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.535 kcal (2) G-P(sol) polarization free energy of solvation -64.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds