Wall clock time and date at job start Mon Mar 30 2020 06:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46572 * 2 1 4 4 H 1.09002 * 109.47012 * 174.22696 * 3 2 1 5 5 C 1.50693 * 109.47149 * 54.23231 * 3 2 1 6 6 H 1.08005 * 119.99636 * 239.99565 * 5 3 2 7 7 C 1.37878 * 120.00423 * 59.99780 * 5 3 2 8 8 N 1.31510 * 119.99862 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00154 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47406 * 59.99853 * 9 7 5 11 11 H 1.48498 * 109.47033 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.46883 * 299.99833 * 9 7 5 13 13 N 1.46900 * 109.47312 * 294.22617 * 3 2 1 14 14 C 1.46895 * 111.00179 * 274.83999 * 13 3 2 15 15 H 1.08995 * 109.47360 * 35.16402 * 14 13 3 16 16 C 1.53009 * 109.46930 * 275.16453 * 14 13 3 17 17 C 1.50700 * 109.47278 * 155.17052 * 14 13 3 18 18 N 1.31781 * 122.75296 * 45.01411 * 17 14 13 19 19 C 1.29025 * 117.13005 * 179.97438 * 18 17 14 20 20 C 1.50697 * 124.91854 * 180.02562 * 19 18 17 21 21 S 1.70979 * 110.16432 * 0.02562 * 19 18 17 22 22 C 1.33639 * 122.75027 * 224.73200 * 17 14 13 23 23 C 1.50704 * 126.03380 * 0.03432 * 22 17 14 24 24 H 1.08996 * 109.47134 * 298.73669 * 1 2 3 25 25 H 1.09009 * 109.46390 * 178.74035 * 1 2 3 26 26 H 1.08995 * 109.47228 * 58.74226 * 1 2 3 27 27 H 1.08992 * 109.47344 * 119.99476 * 2 1 3 28 28 H 1.09000 * 109.47232 * 240.00441 * 2 1 3 29 29 H 0.96995 * 120.00105 * 179.97438 * 8 7 5 30 30 H 1.00909 * 110.99839 * 38.79135 * 13 3 2 31 31 H 1.09001 * 109.46669 * 300.00358 * 16 14 13 32 32 H 1.09002 * 109.46546 * 60.00191 * 16 14 13 33 33 H 1.08996 * 109.46895 * 179.97438 * 16 14 13 34 34 H 1.09003 * 109.47268 * 90.00302 * 20 19 18 35 35 H 1.09005 * 109.46705 * 210.00346 * 20 19 18 36 36 H 1.08994 * 109.47312 * 329.99748 * 20 19 18 37 37 H 1.08998 * 109.47372 * 90.00424 * 23 22 17 38 38 H 1.09007 * 109.46891 * 210.00204 * 23 22 17 39 39 H 1.08997 * 109.47468 * 329.99706 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1250 1.4444 0.1034 5 6 1.4243 2.1929 1.1528 6 1 0.8169 3.0662 0.9659 7 6 1.6365 1.7647 2.4461 8 7 2.3765 0.7016 2.6737 9 14 0.8728 2.6944 3.8750 10 1 -0.6055 2.6914 3.7340 11 1 1.2491 2.0360 5.1517 12 1 1.3672 4.0948 3.8751 13 7 1.6673 2.0937 -1.2630 14 6 2.6573 1.8142 -2.3115 15 1 3.0436 0.8027 -2.1862 16 6 3.8086 2.8165 -2.2061 17 6 2.0052 1.9390 -3.6644 18 7 1.2078 2.9389 -3.9820 19 6 0.7083 2.9381 -5.1716 20 6 -0.2202 3.9918 -5.7180 21 16 1.2524 1.5685 -6.0384 22 6 2.1924 1.0475 -4.6422 23 6 3.0530 -0.1872 -4.5634 24 1 -0.3633 0.4941 0.9011 25 1 -0.3632 -1.0275 -0.0226 26 1 -0.3633 0.5332 -0.8784 27 1 1.8934 -0.5137 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 2.5260 0.4006 3.5835 30 1 0.7427 1.8141 -1.5549 31 1 3.4222 3.8280 -2.3314 32 1 4.2803 2.7263 -1.2275 33 1 4.5435 2.6088 -2.9838 34 1 0.3642 4.7820 -6.1895 35 1 -0.8856 3.5427 -6.4554 36 1 -0.8108 4.4129 -4.9045 37 1 2.4544 -1.0252 -4.2062 38 1 3.4481 -0.4185 -5.5526 39 1 3.8790 -0.0110 -3.8744 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182824.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:09 Heat of formation + Delta-G solvation = 30.048935 kcal Electronic energy + Delta-G solvation = -18902.051477 eV Core-core repulsion = 16163.977776 eV Total energy + Delta-G solvation = -2738.073700 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.93998 -36.63333 -33.97644 -32.39121 -31.01299 -30.18605 -28.35759 -26.13350 -25.50664 -23.66646 -23.00379 -21.36206 -19.10226 -18.65323 -17.45528 -16.17896 -15.09990 -15.02920 -14.73414 -14.47047 -13.66073 -13.44235 -13.27040 -13.01274 -12.90113 -12.76334 -12.52071 -12.14428 -12.07573 -12.02373 -11.69282 -11.38864 -11.07102 -10.90759 -10.75267 -10.51474 -10.42579 -9.89383 -9.75098 -9.50673 -9.31329 -9.06884 -8.92459 -8.38559 -8.28147 -7.10521 -5.92006 -3.92422 0.84479 1.45117 1.83986 3.02833 3.38594 3.42276 3.46510 4.23235 4.49716 5.01240 5.06510 5.12085 5.33052 5.39709 5.40872 5.45067 5.53261 5.74779 5.82005 5.93968 5.94921 6.06136 6.28130 6.36929 6.40642 6.43688 6.56254 6.61221 6.88289 6.94325 7.32451 7.34237 7.54173 7.74785 7.94788 8.05059 8.35994 8.64591 8.70847 9.13589 9.70854 11.15279 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.026580 B = 0.005126 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.189465 B = 5460.717697 C = 5774.204416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.145 4.145 3 C 0.214 3.786 4 H 0.035 0.965 5 C -0.484 4.484 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.898 5.898 9 Si 0.893 3.107 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.666 5.666 14 C 0.158 3.842 15 H 0.050 0.950 16 C -0.130 4.130 17 C 0.078 3.922 18 N -0.438 5.438 19 C 0.042 3.958 20 C -0.074 4.074 21 S 0.077 5.923 22 C -0.224 4.224 23 C -0.074 4.074 24 H 0.066 0.934 25 H 0.021 0.979 26 H 0.027 0.973 27 H 0.092 0.908 28 H 0.008 0.992 29 H 0.259 0.741 30 H 0.329 0.671 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.040 0.960 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.016 -0.129 -17.230 17.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.184 4.184 3 C 0.107 3.893 4 H 0.052 0.948 5 C -0.523 4.523 6 H 0.079 0.921 7 C -0.143 4.143 8 N -0.538 5.538 9 Si 0.721 3.279 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.297 5.297 14 C 0.045 3.955 15 H 0.068 0.932 16 C -0.188 4.188 17 C -0.054 4.054 18 N -0.151 5.151 19 C -0.237 4.237 20 C -0.134 4.134 21 S 0.332 5.668 22 C -0.345 4.345 23 C -0.133 4.133 24 H 0.085 0.915 25 H 0.040 0.960 26 H 0.046 0.954 27 H 0.111 0.889 28 H 0.027 0.973 29 H 0.068 0.932 30 H 0.149 0.851 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.998 0.446 -17.561 17.595 hybrid contribution -0.254 -0.623 1.395 1.548 sum -1.252 -0.176 -16.166 16.215 Atomic orbital electron populations 1.21554 0.97758 0.97867 1.01225 1.22118 0.94997 1.01309 1.00022 1.19278 0.96077 0.88462 0.85527 0.94757 1.21021 1.30263 1.11401 0.89630 0.92082 1.24893 0.95635 0.95191 0.98621 1.69869 1.39363 1.24196 1.20369 0.86641 0.79605 0.80055 0.81558 1.20462 1.21585 1.20366 1.60873 1.03314 1.62981 1.02573 1.20086 0.93324 0.97492 0.84593 0.93225 1.21727 0.96121 0.99869 1.01086 1.20511 0.97031 0.89868 0.97956 1.66099 1.09667 1.24375 1.14986 1.26984 1.03518 1.00141 0.93063 1.20392 0.96626 0.94971 1.01424 1.83677 1.43116 1.21617 1.18411 1.25669 1.08119 1.04557 0.96131 1.20241 0.98001 0.92423 1.02658 0.91474 0.96009 0.95364 0.88923 0.97306 0.93165 0.85148 0.91939 0.91616 0.94126 0.89930 0.90540 0.89155 0.90666 0.91397 0.89991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.39 37.16 0.35 -2.45 16 2 C -0.14 -3.43 5.48 -26.73 -0.15 -3.57 16 3 C 0.21 5.34 2.14 -68.87 -0.15 5.19 16 4 H 0.03 0.94 7.10 -51.93 -0.37 0.57 16 5 C -0.48 -13.29 7.35 -34.44 -0.25 -13.54 16 6 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 7 C 0.06 1.56 5.23 -17.82 -0.09 1.47 16 8 N -0.90 -25.39 11.39 55.43 0.63 -24.76 16 9 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.67 -14.78 5.96 -102.17 -0.61 -15.39 16 14 C 0.16 3.00 2.58 -68.86 -0.18 2.83 16 15 H 0.05 0.94 5.65 -51.93 -0.29 0.65 16 16 C -0.13 -2.36 9.38 37.16 0.35 -2.01 16 17 C 0.08 1.35 5.29 -84.23 -0.45 0.90 16 18 N -0.44 -7.62 10.43 -8.06 -0.08 -7.70 16 19 C 0.04 0.58 7.39 -13.46 -0.10 0.48 16 20 C -0.07 -0.73 10.46 36.00 0.38 -0.35 16 21 S 0.08 0.95 23.18 -107.50 -2.49 -1.54 16 22 C -0.22 -3.27 6.59 -35.92 -0.24 -3.50 16 23 C -0.07 -0.88 9.81 36.01 0.35 -0.53 16 24 H 0.07 1.62 7.05 -51.93 -0.37 1.25 16 25 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 26 H 0.03 0.58 6.42 -51.93 -0.33 0.25 16 27 H 0.09 2.44 6.25 -51.93 -0.32 2.12 16 28 H 0.01 0.18 7.38 -51.93 -0.38 -0.20 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.33 7.39 6.20 -39.29 -0.24 7.14 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.27 7.42 -51.93 -0.39 0.88 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 39 H 0.08 0.98 7.11 -51.93 -0.37 0.61 16 LS Contribution 324.74 15.07 4.89 4.89 Total: -1.00 -29.44 324.74 -8.85 -38.28 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -5.99 Total: 4.67 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -0.17 Total: -15.08 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: -0.06 Total: -47.85 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.49 Total: -1.54 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.44 -8.85 -38.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182824.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.332 kcal (2) G-P(sol) polarization free energy of solvation -29.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds