Wall clock time and date at job start Mon Mar 30 2020 06:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46572 * 2 1 4 4 H 1.09002 * 109.47012 * 174.22696 * 3 2 1 5 5 C 1.50693 * 109.47149 * 54.23231 * 3 2 1 6 6 H 1.08005 * 119.99636 * 239.99565 * 5 3 2 7 7 C 1.37878 * 120.00423 * 59.99780 * 5 3 2 8 8 N 1.31510 * 119.99862 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00154 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47406 * 59.99853 * 9 7 5 11 11 H 1.48498 * 109.47033 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.46883 * 299.99833 * 9 7 5 13 13 N 1.46900 * 109.47312 * 294.22617 * 3 2 1 14 14 C 1.46895 * 111.00179 * 274.83999 * 13 3 2 15 15 H 1.08995 * 109.47360 * 35.16402 * 14 13 3 16 16 C 1.53009 * 109.46930 * 275.16453 * 14 13 3 17 17 C 1.50700 * 109.47278 * 155.17052 * 14 13 3 18 18 N 1.31781 * 122.75296 * 45.01411 * 17 14 13 19 19 C 1.29025 * 117.13005 * 179.97438 * 18 17 14 20 20 C 1.50697 * 124.91854 * 180.02562 * 19 18 17 21 21 S 1.70979 * 110.16432 * 0.02562 * 19 18 17 22 22 C 1.33639 * 122.75027 * 224.73200 * 17 14 13 23 23 C 1.50704 * 126.03380 * 0.03432 * 22 17 14 24 24 H 1.08996 * 109.47134 * 298.73669 * 1 2 3 25 25 H 1.09009 * 109.46390 * 178.74035 * 1 2 3 26 26 H 1.08995 * 109.47228 * 58.74226 * 1 2 3 27 27 H 1.08992 * 109.47344 * 119.99476 * 2 1 3 28 28 H 1.09000 * 109.47232 * 240.00441 * 2 1 3 29 29 H 0.96995 * 120.00105 * 179.97438 * 8 7 5 30 30 H 1.00909 * 110.99839 * 38.79135 * 13 3 2 31 31 H 1.09001 * 109.46669 * 300.00358 * 16 14 13 32 32 H 1.09002 * 109.46546 * 60.00191 * 16 14 13 33 33 H 1.08996 * 109.46895 * 179.97438 * 16 14 13 34 34 H 1.09003 * 109.47268 * 90.00302 * 20 19 18 35 35 H 1.09005 * 109.46705 * 210.00346 * 20 19 18 36 36 H 1.08994 * 109.47312 * 329.99748 * 20 19 18 37 37 H 1.08998 * 109.47372 * 90.00424 * 23 22 17 38 38 H 1.09007 * 109.46891 * 210.00204 * 23 22 17 39 39 H 1.08997 * 109.47468 * 329.99706 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1250 1.4444 0.1034 5 6 1.4243 2.1929 1.1528 6 1 0.8169 3.0662 0.9659 7 6 1.6365 1.7647 2.4461 8 7 2.3765 0.7016 2.6737 9 14 0.8728 2.6944 3.8750 10 1 -0.6055 2.6914 3.7340 11 1 1.2491 2.0360 5.1517 12 1 1.3672 4.0948 3.8751 13 7 1.6673 2.0937 -1.2630 14 6 2.6573 1.8142 -2.3115 15 1 3.0436 0.8027 -2.1862 16 6 3.8086 2.8165 -2.2061 17 6 2.0052 1.9390 -3.6644 18 7 1.2078 2.9389 -3.9820 19 6 0.7083 2.9381 -5.1716 20 6 -0.2202 3.9918 -5.7180 21 16 1.2524 1.5685 -6.0384 22 6 2.1924 1.0475 -4.6422 23 6 3.0530 -0.1872 -4.5634 24 1 -0.3633 0.4941 0.9011 25 1 -0.3632 -1.0275 -0.0226 26 1 -0.3633 0.5332 -0.8784 27 1 1.8934 -0.5137 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 2.5260 0.4006 3.5835 30 1 0.7427 1.8141 -1.5549 31 1 3.4222 3.8280 -2.3314 32 1 4.2803 2.7263 -1.2275 33 1 4.5435 2.6088 -2.9838 34 1 0.3642 4.7820 -6.1895 35 1 -0.8856 3.5427 -6.4554 36 1 -0.8108 4.4129 -4.9045 37 1 2.4544 -1.0252 -4.2062 38 1 3.4481 -0.4185 -5.5526 39 1 3.8790 -0.0110 -3.8744 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054182824.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:09 Heat of formation + Delta-G solvation = 11.746335 kcal Electronic energy + Delta-G solvation = -18902.845137 eV Core-core repulsion = 16163.977776 eV Total energy + Delta-G solvation = -2738.867360 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.13035 -38.36749 -35.46128 -33.93382 -32.78810 -31.09958 -30.05331 -28.01529 -26.72213 -25.34197 -24.43369 -22.71670 -20.96377 -19.79763 -18.74888 -18.06190 -16.86891 -16.42343 -16.14074 -15.98956 -15.17219 -14.61075 -14.52073 -14.42938 -14.22533 -14.10375 -14.01757 -13.70401 -13.31091 -13.06675 -12.93238 -12.87644 -12.78527 -12.60840 -12.53541 -12.40721 -12.04742 -11.71093 -11.58324 -11.37335 -10.96209 -10.41930 -10.40474 -10.09674 -9.48485 -8.87726 -8.03806 -6.11089 -0.22094 0.43430 0.76390 1.43651 1.44449 1.52133 1.85354 2.47057 3.19352 3.24872 3.64427 3.89153 4.12357 4.20112 4.34407 4.48504 4.51433 4.58888 4.60063 4.66020 4.70988 4.72407 4.79304 4.90399 4.97227 5.02007 5.10575 5.11003 5.24717 5.37271 5.41034 5.44058 5.66475 5.74490 5.86801 6.34659 6.71861 6.82129 6.99719 7.00620 7.56181 9.01551 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.026580 B = 0.005126 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.189465 B = 5460.717697 C = 5774.204416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.136 4.136 3 C 0.223 3.777 4 H 0.004 0.996 5 C -0.499 4.499 6 H 0.046 0.954 7 C 0.017 3.983 8 N -0.919 5.919 9 Si 0.949 3.051 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.278 1.278 13 N -0.671 5.671 14 C 0.159 3.841 15 H 0.048 0.952 16 C -0.121 4.121 17 C 0.050 3.950 18 N -0.483 5.483 19 C 0.029 3.971 20 C -0.074 4.074 21 S 0.149 5.851 22 C -0.231 4.231 23 C -0.076 4.076 24 H 0.042 0.958 25 H 0.044 0.956 26 H 0.037 0.963 27 H 0.065 0.935 28 H 0.025 0.975 29 H 0.259 0.741 30 H 0.327 0.673 31 H 0.048 0.952 32 H 0.044 0.956 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.797 -0.480 -19.337 19.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.176 4.176 3 C 0.114 3.886 4 H 0.022 0.978 5 C -0.538 4.538 6 H 0.064 0.936 7 C -0.181 4.181 8 N -0.559 5.559 9 Si 0.775 3.225 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.203 1.203 13 N -0.303 5.303 14 C 0.047 3.953 15 H 0.066 0.934 16 C -0.179 4.179 17 C -0.081 4.081 18 N -0.198 5.198 19 C -0.249 4.249 20 C -0.135 4.135 21 S 0.404 5.596 22 C -0.353 4.353 23 C -0.135 4.135 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.083 0.917 28 H 0.043 0.957 29 H 0.068 0.932 30 H 0.146 0.854 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.781 0.100 -19.689 19.770 hybrid contribution -0.001 -0.514 1.912 1.980 sum -1.782 -0.415 -17.778 17.872 Atomic orbital electron populations 1.21421 0.96382 0.99157 1.00399 1.21947 0.96120 1.00151 0.99368 1.19002 0.93919 0.89263 0.86382 0.97825 1.21204 1.30323 1.11241 0.91001 0.93607 1.25527 0.95994 0.95911 1.00708 1.69986 1.40070 1.25112 1.20740 0.85755 0.78979 0.78796 0.78922 1.19931 1.20968 1.20340 1.60738 1.03958 1.62867 1.02707 1.20005 0.92775 0.97321 0.85240 0.93402 1.21633 0.96496 0.99025 1.00783 1.20175 0.98825 0.91539 0.97593 1.66058 1.11124 1.25455 1.17135 1.27621 1.03225 1.01472 0.92579 1.20575 0.96488 0.94673 1.01720 1.83375 1.41031 1.19456 1.15746 1.26043 1.07944 1.04495 0.96808 1.20351 0.97596 0.91417 1.04165 0.93928 0.93685 0.94363 0.91676 0.95654 0.93181 0.85382 0.93318 0.93702 0.91443 0.88311 0.87793 0.89958 0.90228 0.88799 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.09 9.39 71.98 0.68 -4.41 16 2 C -0.14 -6.51 5.48 30.60 0.17 -6.34 16 3 C 0.22 11.44 2.14 44.17 0.09 11.53 16 4 H 0.00 0.22 7.10 -2.39 -0.02 0.20 16 5 C -0.50 -28.10 7.35 25.60 0.19 -27.92 16 6 H 0.05 2.67 7.81 -2.91 -0.02 2.64 16 7 C 0.02 0.94 5.23 84.66 0.44 1.38 16 8 N -0.92 -52.91 11.39 21.45 0.24 -52.67 16 9 Si 0.95 44.90 29.54 68.60 2.03 46.93 16 10 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 13 N -0.67 -30.53 5.96 -477.16 -2.84 -33.37 16 14 C 0.16 6.12 2.58 44.17 0.11 6.24 16 15 H 0.05 1.84 5.65 -2.39 -0.01 1.83 16 16 C -0.12 -4.50 9.38 71.99 0.68 -3.83 16 17 C 0.05 1.70 5.29 41.52 0.22 1.92 16 18 N -0.48 -16.50 10.43 -179.40 -1.87 -18.37 16 19 C 0.03 0.75 7.39 88.52 0.65 1.41 16 20 C -0.07 -1.29 10.46 71.23 0.75 -0.55 16 21 S 0.15 3.19 23.18 -56.49 -1.31 1.88 16 22 C -0.23 -6.30 6.59 24.64 0.16 -6.13 16 23 C -0.08 -1.64 9.81 71.24 0.70 -0.95 16 24 H 0.04 2.05 7.05 -2.39 -0.02 2.04 16 25 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 26 H 0.04 1.57 6.42 -2.39 -0.02 1.55 16 27 H 0.06 3.49 6.25 -2.39 -0.01 3.48 16 28 H 0.02 1.09 7.38 -2.39 -0.02 1.08 16 29 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 30 H 0.33 14.89 6.20 -89.69 -0.56 14.34 16 31 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.04 1.80 7.42 -2.39 -0.02 1.79 16 33 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.08 1.73 7.11 -2.39 -0.02 1.72 16 Total: -1.00 -64.41 324.74 1.57 -62.84 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 0.49 Total: 20.42 kcal Atomic # 6 Polarization: -32.49 SS G_CDS: 4.84 Total: -27.66 kcal Atomic # 7 Polarization: -99.94 SS G_CDS: -4.47 Total: -104.41 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: 3.19 SS G_CDS: -1.31 Total: 1.88 kcal Total: -64.41 1.57 -62.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182824.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.590 kcal (2) G-P(sol) polarization free energy of solvation -64.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds