Wall clock time and date at job start Mon Mar 30 2020 06:38:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53005 * 109.46572 * 2 1
4 4 H 1.09002 * 109.47012 * 174.22696 * 3 2 1
5 5 C 1.50693 * 109.47149 * 54.23231 * 3 2 1
6 6 H 1.08005 * 119.99636 * 239.99565 * 5 3 2
7 7 C 1.37878 * 120.00423 * 59.99780 * 5 3 2
8 8 N 1.31510 * 119.99862 * 0.02562 * 7 5 3
9 9 Si 1.86798 * 120.00154 * 180.02562 * 7 5 3
10 10 H 1.48497 * 109.47406 * 59.99853 * 9 7 5
11 11 H 1.48498 * 109.47033 * 179.97438 * 9 7 5
12 12 H 1.48508 * 109.46883 * 299.99833 * 9 7 5
13 13 N 1.46900 * 109.47312 * 294.22617 * 3 2 1
14 14 C 1.46895 * 111.00179 * 274.83999 * 13 3 2
15 15 H 1.08995 * 109.47360 * 35.16402 * 14 13 3
16 16 C 1.53009 * 109.46930 * 275.16453 * 14 13 3
17 17 C 1.50700 * 109.47278 * 155.17052 * 14 13 3
18 18 N 1.31781 * 122.75296 * 45.01411 * 17 14 13
19 19 C 1.29025 * 117.13005 * 179.97438 * 18 17 14
20 20 C 1.50697 * 124.91854 * 180.02562 * 19 18 17
21 21 S 1.70979 * 110.16432 * 0.02562 * 19 18 17
22 22 C 1.33639 * 122.75027 * 224.73200 * 17 14 13
23 23 C 1.50704 * 126.03380 * 0.03432 * 22 17 14
24 24 H 1.08996 * 109.47134 * 298.73669 * 1 2 3
25 25 H 1.09009 * 109.46390 * 178.74035 * 1 2 3
26 26 H 1.08995 * 109.47228 * 58.74226 * 1 2 3
27 27 H 1.08992 * 109.47344 * 119.99476 * 2 1 3
28 28 H 1.09000 * 109.47232 * 240.00441 * 2 1 3
29 29 H 0.96995 * 120.00105 * 179.97438 * 8 7 5
30 30 H 1.00909 * 110.99839 * 38.79135 * 13 3 2
31 31 H 1.09001 * 109.46669 * 300.00358 * 16 14 13
32 32 H 1.09002 * 109.46546 * 60.00191 * 16 14 13
33 33 H 1.08996 * 109.46895 * 179.97438 * 16 14 13
34 34 H 1.09003 * 109.47268 * 90.00302 * 20 19 18
35 35 H 1.09005 * 109.46705 * 210.00346 * 20 19 18
36 36 H 1.08994 * 109.47312 * 329.99748 * 20 19 18
37 37 H 1.08998 * 109.47372 * 90.00424 * 23 22 17
38 38 H 1.09007 * 109.46891 * 210.00204 * 23 22 17
39 39 H 1.08997 * 109.47468 * 329.99706 * 23 22 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 1 3.1250 1.4444 0.1034
5 6 1.4243 2.1929 1.1528
6 1 0.8169 3.0662 0.9659
7 6 1.6365 1.7647 2.4461
8 7 2.3765 0.7016 2.6737
9 14 0.8728 2.6944 3.8750
10 1 -0.6055 2.6914 3.7340
11 1 1.2491 2.0360 5.1517
12 1 1.3672 4.0948 3.8751
13 7 1.6673 2.0937 -1.2630
14 6 2.6573 1.8142 -2.3115
15 1 3.0436 0.8027 -2.1862
16 6 3.8086 2.8165 -2.2061
17 6 2.0052 1.9390 -3.6644
18 7 1.2078 2.9389 -3.9820
19 6 0.7083 2.9381 -5.1716
20 6 -0.2202 3.9918 -5.7180
21 16 1.2524 1.5685 -6.0384
22 6 2.1924 1.0475 -4.6422
23 6 3.0530 -0.1872 -4.5634
24 1 -0.3633 0.4941 0.9011
25 1 -0.3632 -1.0275 -0.0226
26 1 -0.3633 0.5332 -0.8784
27 1 1.8934 -0.5137 0.8899
28 1 1.8934 -0.5138 -0.8900
29 1 2.5260 0.4006 3.5835
30 1 0.7427 1.8141 -1.5549
31 1 3.4222 3.8280 -2.3314
32 1 4.2803 2.7263 -1.2275
33 1 4.5435 2.6088 -2.9838
34 1 0.3642 4.7820 -6.1895
35 1 -0.8856 3.5427 -6.4554
36 1 -0.8108 4.4129 -4.9045
37 1 2.4544 -1.0252 -4.2062
38 1 3.4481 -0.4185 -5.5526
39 1 3.8790 -0.0110 -3.8744
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000054182824.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:38:09
Heat of formation + Delta-G solvation = 11.746335 kcal
Electronic energy + Delta-G solvation = -18902.845137 eV
Core-core repulsion = 16163.977776 eV
Total energy + Delta-G solvation = -2738.867360 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 268.130 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-41.13035 -38.36749 -35.46128 -33.93382 -32.78810 -31.09958 -30.05331 -28.01529
-26.72213 -25.34197 -24.43369 -22.71670 -20.96377 -19.79763 -18.74888 -18.06190
-16.86891 -16.42343 -16.14074 -15.98956 -15.17219 -14.61075 -14.52073 -14.42938
-14.22533 -14.10375 -14.01757 -13.70401 -13.31091 -13.06675 -12.93238 -12.87644
-12.78527 -12.60840 -12.53541 -12.40721 -12.04742 -11.71093 -11.58324 -11.37335
-10.96209 -10.41930 -10.40474 -10.09674 -9.48485 -8.87726 -8.03806 -6.11089
-0.22094 0.43430 0.76390 1.43651 1.44449 1.52133 1.85354 2.47057
3.19352 3.24872 3.64427 3.89153 4.12357 4.20112 4.34407 4.48504
4.51433 4.58888 4.60063 4.66020 4.70988 4.72407 4.79304 4.90399
4.97227 5.02007 5.10575 5.11003 5.24717 5.37271 5.41034 5.44058
5.66475 5.74490 5.86801 6.34659 6.71861 6.82129 6.99719 7.00620
7.56181 9.01551
Molecular weight = 268.13amu
Principal moments of inertia in cm(-1)
A = 0.026580 B = 0.005126 C = 0.004848
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1053.189465 B = 5460.717697 C = 5774.204416
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 C -0.136 4.136
3 C 0.223 3.777
4 H 0.004 0.996
5 C -0.499 4.499
6 H 0.046 0.954
7 C 0.017 3.983
8 N -0.919 5.919
9 Si 0.949 3.051
10 H -0.274 1.274
11 H -0.284 1.284
12 H -0.278 1.278
13 N -0.671 5.671
14 C 0.159 3.841
15 H 0.048 0.952
16 C -0.121 4.121
17 C 0.050 3.950
18 N -0.483 5.483
19 C 0.029 3.971
20 C -0.074 4.074
21 S 0.149 5.851
22 C -0.231 4.231
23 C -0.076 4.076
24 H 0.042 0.958
25 H 0.044 0.956
26 H 0.037 0.963
27 H 0.065 0.935
28 H 0.025 0.975
29 H 0.259 0.741
30 H 0.327 0.673
31 H 0.048 0.952
32 H 0.044 0.956
33 H 0.067 0.933
34 H 0.098 0.902
35 H 0.103 0.897
36 H 0.082 0.918
37 H 0.079 0.921
38 H 0.093 0.907
39 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.797 -0.480 -19.337 19.427
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C -0.176 4.176
3 C 0.114 3.886
4 H 0.022 0.978
5 C -0.538 4.538
6 H 0.064 0.936
7 C -0.181 4.181
8 N -0.559 5.559
9 Si 0.775 3.225
10 H -0.199 1.199
11 H -0.210 1.210
12 H -0.203 1.203
13 N -0.303 5.303
14 C 0.047 3.953
15 H 0.066 0.934
16 C -0.179 4.179
17 C -0.081 4.081
18 N -0.198 5.198
19 C -0.249 4.249
20 C -0.135 4.135
21 S 0.404 5.596
22 C -0.353 4.353
23 C -0.135 4.135
24 H 0.061 0.939
25 H 0.063 0.937
26 H 0.056 0.944
27 H 0.083 0.917
28 H 0.043 0.957
29 H 0.068 0.932
30 H 0.146 0.854
31 H 0.067 0.933
32 H 0.063 0.937
33 H 0.086 0.914
34 H 0.117 0.883
35 H 0.122 0.878
36 H 0.100 0.900
37 H 0.098 0.902
38 H 0.112 0.888
39 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -1.781 0.100 -19.689 19.770
hybrid contribution -0.001 -0.514 1.912 1.980
sum -1.782 -0.415 -17.778 17.872
Atomic orbital electron populations
1.21421 0.96382 0.99157 1.00399 1.21947 0.96120 1.00151 0.99368
1.19002 0.93919 0.89263 0.86382 0.97825 1.21204 1.30323 1.11241
0.91001 0.93607 1.25527 0.95994 0.95911 1.00708 1.69986 1.40070
1.25112 1.20740 0.85755 0.78979 0.78796 0.78922 1.19931 1.20968
1.20340 1.60738 1.03958 1.62867 1.02707 1.20005 0.92775 0.97321
0.85240 0.93402 1.21633 0.96496 0.99025 1.00783 1.20175 0.98825
0.91539 0.97593 1.66058 1.11124 1.25455 1.17135 1.27621 1.03225
1.01472 0.92579 1.20575 0.96488 0.94673 1.01720 1.83375 1.41031
1.19456 1.15746 1.26043 1.07944 1.04495 0.96808 1.20351 0.97596
0.91417 1.04165 0.93928 0.93685 0.94363 0.91676 0.95654 0.93181
0.85382 0.93318 0.93702 0.91443 0.88311 0.87793 0.89958 0.90228
0.88799 0.90495
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.09 9.39 71.98 0.68 -4.41 16
2 C -0.14 -6.51 5.48 30.60 0.17 -6.34 16
3 C 0.22 11.44 2.14 44.17 0.09 11.53 16
4 H 0.00 0.22 7.10 -2.39 -0.02 0.20 16
5 C -0.50 -28.10 7.35 25.60 0.19 -27.92 16
6 H 0.05 2.67 7.81 -2.91 -0.02 2.64 16
7 C 0.02 0.94 5.23 84.66 0.44 1.38 16
8 N -0.92 -52.91 11.39 21.45 0.24 -52.67 16
9 Si 0.95 44.90 29.54 68.60 2.03 46.93 16
10 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16
11 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16
12 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16
13 N -0.67 -30.53 5.96 -477.16 -2.84 -33.37 16
14 C 0.16 6.12 2.58 44.17 0.11 6.24 16
15 H 0.05 1.84 5.65 -2.39 -0.01 1.83 16
16 C -0.12 -4.50 9.38 71.99 0.68 -3.83 16
17 C 0.05 1.70 5.29 41.52 0.22 1.92 16
18 N -0.48 -16.50 10.43 -179.40 -1.87 -18.37 16
19 C 0.03 0.75 7.39 88.52 0.65 1.41 16
20 C -0.07 -1.29 10.46 71.23 0.75 -0.55 16
21 S 0.15 3.19 23.18 -56.49 -1.31 1.88 16
22 C -0.23 -6.30 6.59 24.64 0.16 -6.13 16
23 C -0.08 -1.64 9.81 71.24 0.70 -0.95 16
24 H 0.04 2.05 7.05 -2.39 -0.02 2.04 16
25 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16
26 H 0.04 1.57 6.42 -2.39 -0.02 1.55 16
27 H 0.06 3.49 6.25 -2.39 -0.01 3.48 16
28 H 0.02 1.09 7.38 -2.39 -0.02 1.08 16
29 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16
30 H 0.33 14.89 6.20 -89.69 -0.56 14.34 16
31 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16
32 H 0.04 1.80 7.42 -2.39 -0.02 1.79 16
33 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16
34 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16
35 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16
36 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16
37 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16
38 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16
39 H 0.08 1.73 7.11 -2.39 -0.02 1.72 16
Total: -1.00 -64.41 324.74 1.57 -62.84
By element:
Atomic # 1 Polarization: 19.93 SS G_CDS: 0.49 Total: 20.42 kcal
Atomic # 6 Polarization: -32.49 SS G_CDS: 4.84 Total: -27.66 kcal
Atomic # 7 Polarization: -99.94 SS G_CDS: -4.47 Total: -104.41 kcal
Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal
Atomic # 16 Polarization: 3.19 SS G_CDS: -1.31 Total: 1.88 kcal
Total: -64.41 1.57 -62.84 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000054182824.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.590 kcal
(2) G-P(sol) polarization free energy of solvation -64.414 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.175 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.571 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.843 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.746 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds