Wall clock time and date at job start Mon Mar 30 2020 06:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46840 * 2 1 4 4 N 1.46897 * 109.46854 * 120.00196 * 2 1 3 5 5 C 1.53004 * 109.46788 * 240.00323 * 2 1 3 6 6 H 1.08999 * 109.47119 * 296.41142 * 5 2 1 7 7 C 1.50706 * 109.46982 * 176.41558 * 5 2 1 8 8 C 1.33385 * 125.20164 * 110.02367 * 7 5 2 9 9 C 1.38428 * 114.91892 * 179.97438 * 8 7 5 10 10 C 1.33387 * 114.92131 * 359.97438 * 9 8 7 11 11 S 1.75882 * 125.19944 * 289.71972 * 7 5 2 12 12 N 1.46896 * 109.47476 * 56.41543 * 5 2 1 13 13 C 1.46903 * 111.00126 * 277.00484 * 12 5 2 14 14 C 1.46896 * 111.00437 * 153.04977 * 12 5 2 15 15 H 1.09004 * 109.46691 * 307.23843 * 14 12 5 16 16 C 1.52999 * 109.46911 * 67.23055 * 14 12 5 17 17 C 1.50696 * 109.47527 * 187.23283 * 14 12 5 18 18 H 1.07995 * 119.99901 * 0.02562 * 17 14 12 19 19 C 1.37875 * 120.00253 * 179.97438 * 17 14 12 20 20 N 1.31512 * 120.00156 * 180.02562 * 19 17 14 21 21 Si 1.86805 * 119.99693 * 0.02562 * 19 17 14 22 22 H 1.48501 * 109.47125 * 89.99915 * 21 19 17 23 23 H 1.48505 * 109.46891 * 209.99607 * 21 19 17 24 24 H 1.48497 * 109.47411 * 330.00003 * 21 19 17 25 25 H 1.08992 * 109.47033 * 161.49667 * 1 2 3 26 26 H 1.08998 * 109.46762 * 281.49773 * 1 2 3 27 27 H 1.09002 * 109.46583 * 41.49771 * 1 2 3 28 28 H 1.00904 * 110.99552 * 179.97438 * 4 2 1 29 29 H 1.00894 * 111.00189 * 303.94581 * 4 2 1 30 30 H 1.08000 * 122.54062 * 359.97438 * 8 7 5 31 31 H 1.07994 * 122.53689 * 180.02562 * 9 8 7 32 32 H 1.07997 * 125.20325 * 179.97438 * 10 9 8 33 33 H 1.08999 * 109.46951 * 68.89234 * 13 12 5 34 34 H 1.08995 * 109.47382 * 188.89638 * 13 12 5 35 35 H 1.08996 * 109.47147 * 308.89966 * 13 12 5 36 36 H 1.09000 * 109.47014 * 186.47395 * 16 14 12 37 37 H 1.08999 * 109.47461 * 306.47217 * 16 14 12 38 38 H 1.09001 * 109.46811 * 66.47642 * 16 14 12 39 39 H 0.97002 * 119.99763 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0400 -0.7212 -1.2493 6 1 1.7301 -1.7657 -1.2178 7 6 3.5444 -0.6448 -1.2946 8 6 4.3726 -1.6735 -1.1075 9 6 5.7185 -1.3625 -1.1966 10 6 5.9833 -0.0812 -1.4566 11 16 4.4765 0.8131 -1.6097 12 7 1.4809 -0.0805 -2.4472 13 6 0.1298 -0.5825 -2.7307 14 6 2.3654 -0.2666 -3.6052 15 1 3.3732 0.0599 -3.3487 16 6 2.3920 -1.7461 -3.9940 17 6 1.8531 0.5484 -4.7647 18 1 0.9601 1.1452 -4.6524 19 6 2.5251 0.5329 -5.9685 20 7 2.0783 1.2445 -6.9802 21 14 4.0702 -0.4989 -6.1624 22 1 3.7018 -1.8580 -6.6339 23 1 4.9718 0.1414 -7.1535 24 1 4.7651 -0.6004 -4.8540 25 1 -0.3633 -0.9745 -0.3261 26 1 -0.3633 0.2048 1.0070 27 1 -0.3632 0.7697 -0.6810 28 1 3.0283 -0.7063 1.2225 29 1 1.6443 -0.2740 2.0372 30 1 4.0198 -2.6734 -0.9020 31 1 6.4953 -2.1013 -1.0663 32 1 6.9716 0.3417 -1.5603 33 1 -0.5568 -0.2334 -1.9595 34 1 -0.1981 -0.2144 -3.7028 35 1 0.1417 -1.6724 -2.7401 36 1 3.1339 -1.9026 -4.7771 37 1 2.6520 -2.3463 -3.1221 38 1 1.4092 -2.0433 -4.3599 39 1 2.5509 1.2333 -7.8272 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063085427.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:11 Heat of formation + Delta-G solvation = 64.649660 kcal Electronic energy + Delta-G solvation = -19838.527977 eV Core-core repulsion = 17101.954677 eV Total energy + Delta-G solvation = -2736.573300 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.13328 -36.77356 -35.22247 -32.42348 -30.24322 -30.10273 -28.09867 -26.46867 -25.15504 -23.65217 -22.93382 -20.43236 -19.35639 -18.84602 -16.73920 -16.54325 -15.92837 -15.47403 -15.15099 -14.70347 -14.10447 -13.67493 -13.34229 -12.99837 -12.92526 -12.43063 -12.28501 -12.22851 -11.90962 -11.84302 -11.59055 -11.37518 -11.27284 -11.03770 -10.73074 -10.59248 -10.26047 -10.12397 -9.86758 -9.47847 -9.05163 -8.62445 -8.57418 -8.23735 -7.73844 -7.37381 -6.03504 -3.99663 1.34847 2.03705 2.44976 3.06756 3.28861 3.40092 3.42590 4.41357 4.43807 4.93005 5.05720 5.26562 5.32784 5.36188 5.53352 5.65704 5.80862 5.85996 5.95349 6.05188 6.06909 6.24032 6.28746 6.32896 6.35847 6.42616 6.45418 6.62324 6.64515 6.76050 6.81851 6.95120 7.17947 7.31450 7.53647 7.68833 7.93776 8.08894 8.68398 9.03673 9.59904 11.09581 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.017843 B = 0.009867 C = 0.007360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.824920 B = 2836.953082 C = 3803.475060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.102 3.898 3 H 0.042 0.958 4 N -0.847 5.847 5 C 0.156 3.844 6 H 0.061 0.939 7 C -0.157 4.157 8 C -0.144 4.144 9 C -0.138 4.138 10 C -0.238 4.238 11 S 0.148 5.852 12 N -0.516 5.516 13 C 0.014 3.986 14 C 0.166 3.834 15 H 0.059 0.941 16 C -0.182 4.182 17 C -0.497 4.497 18 H 0.082 0.918 19 C 0.072 3.928 20 N -0.901 5.901 21 Si 0.877 3.123 22 H -0.283 1.283 23 H -0.297 1.297 24 H -0.264 1.264 25 H 0.060 0.940 26 H 0.046 0.954 27 H 0.074 0.926 28 H 0.340 0.660 29 H 0.337 0.663 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.157 0.843 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.014 0.986 36 H 0.040 0.960 37 H 0.029 0.971 38 H 0.052 0.948 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.115 -3.885 14.679 15.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.010 4.010 3 H 0.060 0.940 4 N -0.378 5.378 5 C 0.045 3.955 6 H 0.079 0.921 7 C -0.275 4.275 8 C -0.175 4.175 9 C -0.169 4.169 10 C -0.375 4.375 11 S 0.413 5.587 12 N -0.240 5.240 13 C -0.134 4.134 14 C 0.058 3.942 15 H 0.076 0.924 16 C -0.241 4.241 17 C -0.535 4.535 18 H 0.100 0.900 19 C -0.129 4.129 20 N -0.540 5.540 21 Si 0.707 3.293 22 H -0.210 1.210 23 H -0.225 1.225 24 H -0.189 1.189 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.093 0.907 28 H 0.153 0.847 29 H 0.150 0.850 30 H 0.151 0.849 31 H 0.149 0.851 32 H 0.174 0.826 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.033 0.967 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.071 0.929 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.379 -2.425 13.982 14.388 hybrid contribution 1.901 -2.193 -0.126 2.905 sum 4.281 -4.617 13.855 15.219 Atomic orbital electron populations 1.22066 0.94392 1.02543 1.00907 1.21256 0.95461 0.95150 0.89159 0.94035 1.58714 1.13999 1.60918 1.04129 1.20215 0.86040 0.97207 0.92035 0.92141 1.24523 0.99344 0.96604 1.06988 1.20014 0.92393 0.99533 1.05513 1.20012 0.96498 0.96008 1.04419 1.25747 1.02413 0.98729 1.10561 1.84670 0.95032 1.11320 1.67683 1.62194 1.03007 1.55522 1.03244 1.22799 0.90663 0.96647 1.03267 1.20220 0.94461 0.90850 0.88664 0.92377 1.22803 1.00969 1.01086 0.99260 1.20914 1.12551 1.26644 0.93382 0.90032 1.24840 0.96878 0.95323 0.95845 1.69874 1.40167 1.41195 1.02739 0.87015 0.84269 0.79966 0.78005 1.20971 1.22504 1.18869 0.92119 0.93494 0.90719 0.84749 0.85049 0.84916 0.85096 0.82565 0.91429 0.89825 0.96745 0.94121 0.95172 0.92864 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 7.73 37.16 0.29 -1.58 16 2 C 0.10 1.46 3.18 -67.71 -0.22 1.25 16 3 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 4 N -0.85 -10.32 9.23 -4.66 -0.04 -10.36 16 5 C 0.16 2.65 1.33 -68.86 -0.09 2.56 16 6 H 0.06 1.07 7.25 -51.93 -0.38 0.70 16 7 C -0.16 -2.66 2.25 -36.00 -0.08 -2.74 16 8 C -0.14 -2.25 9.45 -41.21 -0.39 -2.64 16 9 C -0.14 -2.02 10.18 -41.21 -0.42 -2.44 16 10 C -0.24 -3.60 11.23 29.04 0.33 -3.27 16 11 S 0.15 2.56 20.91 -107.50 -2.25 0.31 16 12 N -0.52 -10.31 4.45 -229.69 -1.02 -11.33 16 13 C 0.01 0.26 7.62 60.07 0.46 0.72 16 14 C 0.17 3.87 1.38 -68.87 -0.09 3.78 16 15 H 0.06 1.39 3.26 -35.88 -0.12 1.28 16 16 C -0.18 -4.10 7.70 37.16 0.29 -3.81 16 17 C -0.50 -13.73 8.34 -34.44 -0.29 -14.02 16 18 H 0.08 2.45 7.26 -52.49 -0.38 2.07 16 19 C 0.07 2.09 5.45 -17.82 -0.10 1.99 16 20 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 21 Si 0.88 22.39 24.31 -169.99 -4.13 18.26 16 22 H -0.28 -7.13 6.93 56.52 0.39 -6.74 16 23 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 24 H -0.26 -6.54 6.53 56.52 0.37 -6.17 16 25 H 0.06 0.82 6.87 -51.93 -0.36 0.46 16 26 H 0.05 0.53 7.98 -51.93 -0.41 0.11 16 27 H 0.07 1.04 6.66 -51.93 -0.35 0.70 16 28 H 0.34 4.13 8.08 -39.29 -0.32 3.82 16 29 H 0.34 3.40 8.87 -39.29 -0.35 3.05 16 30 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 31 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.16 1.96 8.06 -52.49 -0.42 1.53 16 33 H 0.07 1.07 4.11 -51.93 -0.21 0.85 16 34 H 0.08 1.76 6.40 -51.93 -0.33 1.43 16 35 H 0.01 0.25 6.87 -51.93 -0.36 -0.10 16 36 H 0.04 0.96 3.47 -51.93 -0.18 0.78 16 37 H 0.03 0.60 6.10 -51.93 -0.32 0.29 16 38 H 0.05 1.19 7.03 -51.93 -0.36 0.82 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 300.12 15.07 4.52 4.52 Total: -1.00 -30.03 300.12 -7.76 -37.79 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -5.29 Total: 7.78 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -0.32 Total: -20.21 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: -0.29 Total: -48.45 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.13 Total: 18.26 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -2.25 Total: 0.31 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.03 -7.76 -37.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063085427.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.435 kcal (2) G-P(sol) polarization free energy of solvation -30.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds