Wall clock time and date at job start Mon Mar 30 2020 06:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46840 * 2 1 4 4 N 1.46897 * 109.46854 * 120.00196 * 2 1 3 5 5 C 1.53004 * 109.46788 * 240.00323 * 2 1 3 6 6 H 1.08999 * 109.47119 * 296.41142 * 5 2 1 7 7 C 1.50706 * 109.46982 * 176.41558 * 5 2 1 8 8 C 1.33385 * 125.20164 * 110.02367 * 7 5 2 9 9 C 1.38428 * 114.91892 * 179.97438 * 8 7 5 10 10 C 1.33387 * 114.92131 * 359.97438 * 9 8 7 11 11 S 1.75882 * 125.19944 * 289.71972 * 7 5 2 12 12 N 1.46896 * 109.47476 * 56.41543 * 5 2 1 13 13 C 1.46903 * 111.00126 * 277.00484 * 12 5 2 14 14 C 1.46896 * 111.00437 * 153.04977 * 12 5 2 15 15 H 1.09004 * 109.46691 * 307.23843 * 14 12 5 16 16 C 1.52999 * 109.46911 * 67.23055 * 14 12 5 17 17 C 1.50696 * 109.47527 * 187.23283 * 14 12 5 18 18 H 1.07995 * 119.99901 * 0.02562 * 17 14 12 19 19 C 1.37875 * 120.00253 * 179.97438 * 17 14 12 20 20 N 1.31512 * 120.00156 * 180.02562 * 19 17 14 21 21 Si 1.86805 * 119.99693 * 0.02562 * 19 17 14 22 22 H 1.48501 * 109.47125 * 89.99915 * 21 19 17 23 23 H 1.48505 * 109.46891 * 209.99607 * 21 19 17 24 24 H 1.48497 * 109.47411 * 330.00003 * 21 19 17 25 25 H 1.08992 * 109.47033 * 161.49667 * 1 2 3 26 26 H 1.08998 * 109.46762 * 281.49773 * 1 2 3 27 27 H 1.09002 * 109.46583 * 41.49771 * 1 2 3 28 28 H 1.00904 * 110.99552 * 179.97438 * 4 2 1 29 29 H 1.00894 * 111.00189 * 303.94581 * 4 2 1 30 30 H 1.08000 * 122.54062 * 359.97438 * 8 7 5 31 31 H 1.07994 * 122.53689 * 180.02562 * 9 8 7 32 32 H 1.07997 * 125.20325 * 179.97438 * 10 9 8 33 33 H 1.08999 * 109.46951 * 68.89234 * 13 12 5 34 34 H 1.08995 * 109.47382 * 188.89638 * 13 12 5 35 35 H 1.08996 * 109.47147 * 308.89966 * 13 12 5 36 36 H 1.09000 * 109.47014 * 186.47395 * 16 14 12 37 37 H 1.08999 * 109.47461 * 306.47217 * 16 14 12 38 38 H 1.09001 * 109.46811 * 66.47642 * 16 14 12 39 39 H 0.97002 * 119.99763 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0400 -0.7212 -1.2493 6 1 1.7301 -1.7657 -1.2178 7 6 3.5444 -0.6448 -1.2946 8 6 4.3726 -1.6735 -1.1075 9 6 5.7185 -1.3625 -1.1966 10 6 5.9833 -0.0812 -1.4566 11 16 4.4765 0.8131 -1.6097 12 7 1.4809 -0.0805 -2.4472 13 6 0.1298 -0.5825 -2.7307 14 6 2.3654 -0.2666 -3.6052 15 1 3.3732 0.0599 -3.3487 16 6 2.3920 -1.7461 -3.9940 17 6 1.8531 0.5484 -4.7647 18 1 0.9601 1.1452 -4.6524 19 6 2.5251 0.5329 -5.9685 20 7 2.0783 1.2445 -6.9802 21 14 4.0702 -0.4989 -6.1624 22 1 3.7018 -1.8580 -6.6339 23 1 4.9718 0.1414 -7.1535 24 1 4.7651 -0.6004 -4.8540 25 1 -0.3633 -0.9745 -0.3261 26 1 -0.3633 0.2048 1.0070 27 1 -0.3632 0.7697 -0.6810 28 1 3.0283 -0.7063 1.2225 29 1 1.6443 -0.2740 2.0372 30 1 4.0198 -2.6734 -0.9020 31 1 6.4953 -2.1013 -1.0663 32 1 6.9716 0.3417 -1.5603 33 1 -0.5568 -0.2334 -1.9595 34 1 -0.1981 -0.2144 -3.7028 35 1 0.1417 -1.6724 -2.7401 36 1 3.1339 -1.9026 -4.7771 37 1 2.6520 -2.3463 -3.1221 38 1 1.4092 -2.0433 -4.3599 39 1 2.5509 1.2333 -7.8272 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063085427.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:11 Heat of formation + Delta-G solvation = 42.157691 kcal Electronic energy + Delta-G solvation = -19839.503302 eV Core-core repulsion = 17101.954677 eV Total energy + Delta-G solvation = -2737.548625 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.53569 -38.04289 -36.60774 -34.42328 -31.77566 -31.49674 -29.33133 -27.77617 -27.17421 -25.19925 -24.19832 -21.85920 -20.80719 -20.15909 -18.63118 -17.98703 -17.22681 -16.85755 -16.59712 -16.19101 -15.55331 -15.31591 -14.77687 -14.49953 -14.35949 -14.13956 -13.65150 -13.48552 -13.41432 -13.28370 -13.04181 -12.86287 -12.77971 -12.59800 -12.19443 -12.09197 -11.96533 -11.52767 -11.45850 -11.32941 -11.01828 -10.76415 -9.68969 -9.41282 -9.11945 -8.93244 -8.26203 -6.24589 0.14375 0.79686 1.24474 1.25668 1.31991 1.41228 1.90499 2.31266 3.07125 3.12140 3.69113 3.90804 4.09470 4.25242 4.31547 4.41473 4.48449 4.60475 4.62570 4.65576 4.68233 4.74328 4.77085 4.88601 5.00152 5.09270 5.13778 5.25392 5.27145 5.38241 5.42883 5.46630 5.63730 5.70422 6.05878 6.22514 6.44522 6.63331 6.73790 6.80726 7.38084 8.90709 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.017843 B = 0.009867 C = 0.007360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.824920 B = 2836.953082 C = 3803.475060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.109 3.891 3 H 0.027 0.973 4 N -0.839 5.839 5 C 0.160 3.840 6 H 0.060 0.940 7 C -0.171 4.171 8 C -0.138 4.138 9 C -0.138 4.138 10 C -0.230 4.230 11 S 0.084 5.916 12 N -0.528 5.528 13 C 0.019 3.981 14 C 0.171 3.829 15 H 0.062 0.938 16 C -0.177 4.177 17 C -0.490 4.490 18 H 0.042 0.958 19 C 0.017 3.983 20 N -0.949 5.949 21 Si 0.935 3.065 22 H -0.275 1.275 23 H -0.299 1.299 24 H -0.249 1.249 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.342 0.658 29 H 0.351 0.649 30 H 0.150 0.850 31 H 0.164 0.836 32 H 0.181 0.819 33 H 0.096 0.904 34 H 0.049 0.951 35 H 0.022 0.978 36 H 0.030 0.970 37 H 0.055 0.945 38 H 0.046 0.954 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.610 -5.921 16.829 18.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.004 4.004 3 H 0.045 0.955 4 N -0.372 5.372 5 C 0.050 3.950 6 H 0.078 0.922 7 C -0.289 4.289 8 C -0.169 4.169 9 C -0.168 4.168 10 C -0.366 4.366 11 S 0.348 5.652 12 N -0.251 5.251 13 C -0.129 4.129 14 C 0.062 3.938 15 H 0.079 0.921 16 C -0.235 4.235 17 C -0.529 4.529 18 H 0.060 0.940 19 C -0.180 4.180 20 N -0.590 5.590 21 Si 0.763 3.237 22 H -0.202 1.202 23 H -0.227 1.227 24 H -0.173 1.173 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.155 0.845 29 H 0.165 0.835 30 H 0.167 0.833 31 H 0.181 0.819 32 H 0.199 0.801 33 H 0.114 0.886 34 H 0.067 0.933 35 H 0.041 0.959 36 H 0.049 0.951 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.867 -4.473 16.176 17.223 hybrid contribution 1.391 -1.540 -0.691 2.187 sum 5.258 -6.013 15.485 17.424 Atomic orbital electron populations 1.22010 0.93557 1.02076 1.02053 1.21088 0.96055 0.94167 0.89051 0.95495 1.58657 1.14209 1.60413 1.03882 1.20234 0.86424 0.96990 0.91377 0.92238 1.24506 0.99204 0.96476 1.08682 1.20329 0.92815 0.99775 1.04008 1.20374 0.96803 0.96421 1.03235 1.26032 1.02071 0.98526 1.09936 1.84906 0.97762 1.13276 1.69226 1.62078 1.03003 1.56789 1.03231 1.22778 0.90711 0.96997 1.02409 1.20016 0.94970 0.90590 0.88264 0.92102 1.22693 1.00366 1.00615 0.99856 1.21184 1.10818 1.25875 0.95019 0.93979 1.25579 1.00023 0.96706 0.95660 1.70019 1.42019 1.43528 1.03446 0.86062 0.80716 0.78510 0.78382 1.20185 1.22716 1.17334 0.92106 0.91236 0.91936 0.84539 0.83455 0.83282 0.81896 0.80130 0.88636 0.93253 0.95925 0.95143 0.92650 0.93453 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 7.73 71.98 0.56 -2.85 16 2 C 0.11 2.93 3.18 44.92 0.14 3.08 16 3 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 4 N -0.84 -18.18 9.23 -168.67 -1.56 -19.73 16 5 C 0.16 5.16 1.33 44.17 0.06 5.22 16 6 H 0.06 1.94 7.25 -2.39 -0.02 1.93 16 7 C -0.17 -5.43 2.25 24.59 0.06 -5.37 16 8 C -0.14 -3.83 9.45 21.22 0.20 -3.63 16 9 C -0.14 -3.46 10.18 21.22 0.22 -3.25 16 10 C -0.23 -6.22 11.23 66.72 0.75 -5.47 16 11 S 0.08 2.80 20.91 -56.49 -1.18 1.62 16 12 N -0.53 -20.86 4.45 -880.61 -3.92 -24.78 16 13 C 0.02 0.69 7.62 127.69 0.97 1.66 16 14 C 0.17 7.89 1.38 44.17 0.06 7.95 16 15 H 0.06 2.86 3.26 -12.59 -0.04 2.82 16 16 C -0.18 -7.64 7.70 71.98 0.55 -7.08 16 17 C -0.49 -27.87 8.34 25.60 0.21 -27.66 16 18 H 0.04 2.67 7.26 -2.91 -0.02 2.64 16 19 C 0.02 1.00 5.45 84.65 0.46 1.46 16 20 N -0.95 -59.87 13.96 21.45 0.30 -59.57 16 21 Si 0.93 46.21 24.31 68.60 1.67 47.88 16 22 H -0.28 -13.18 6.93 99.48 0.69 -12.49 16 23 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 24 H -0.25 -11.61 6.53 99.48 0.65 -10.96 16 25 H 0.06 1.49 6.87 -2.39 -0.02 1.47 16 26 H 0.07 1.38 7.98 -2.39 -0.02 1.36 16 27 H 0.06 1.68 6.66 -2.39 -0.02 1.66 16 28 H 0.34 7.39 8.08 -89.69 -0.72 6.67 16 29 H 0.35 6.05 8.87 -89.70 -0.80 5.25 16 30 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 31 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 32 H 0.18 3.88 8.06 -2.91 -0.02 3.85 16 33 H 0.10 2.96 4.11 -2.39 -0.01 2.95 16 34 H 0.05 2.15 6.40 -2.39 -0.02 2.13 16 35 H 0.02 0.78 6.87 -2.39 -0.02 0.77 16 36 H 0.03 1.37 3.47 -2.39 -0.01 1.36 16 37 H 0.05 2.08 6.10 -2.39 -0.01 2.07 16 38 H 0.05 2.06 7.03 -2.39 -0.02 2.04 16 39 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -65.73 300.12 -1.00 -66.73 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: -0.55 Total: 23.81 kcal Atomic # 6 Polarization: -40.19 SS G_CDS: 4.24 Total: -35.95 kcal Atomic # 7 Polarization: -98.91 SS G_CDS: -5.18 Total: -104.09 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.67 Total: 47.88 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -1.18 Total: 1.62 kcal Total: -65.73 -1.00 -66.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063085427.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.887 kcal (2) G-P(sol) polarization free energy of solvation -65.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds