Wall clock time and date at job start Mon Mar 30 2020 06:48:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09004 * 109.47184 * 2 1
4 4 N 1.46903 * 109.47330 * 119.99916 * 2 1 3
5 5 C 1.52999 * 109.47105 * 239.99904 * 2 1 3
6 6 H 1.08994 * 109.47409 * 304.93702 * 5 2 1
7 7 C 1.50706 * 109.47114 * 184.93246 * 5 2 1
8 8 C 1.38426 * 122.53340 * 108.51765 * 7 5 2
9 9 C 1.33393 * 114.91784 * 179.97438 * 8 7 5
10 10 S 1.75885 * 109.59218 * 0.02562 * 9 8 7
11 11 C 1.33382 * 122.54378 * 288.23467 * 7 5 2
12 12 N 1.46898 * 109.47111 * 64.94104 * 5 2 1
13 13 C 1.46910 * 110.99619 * 282.55295 * 12 5 2
14 14 C 1.46898 * 111.00500 * 158.59730 * 12 5 2
15 15 H 1.08992 * 109.47100 * 306.17010 * 14 12 5
16 16 C 1.53003 * 109.46935 * 66.17231 * 14 12 5
17 17 C 1.50700 * 109.47266 * 186.16698 * 14 12 5
18 18 H 1.07999 * 120.00081 * 353.23260 * 17 14 12
19 19 C 1.37880 * 119.99799 * 173.23037 * 17 14 12
20 20 N 1.31510 * 120.00306 * 351.59263 * 19 17 14
21 21 Si 1.86804 * 119.99862 * 171.58930 * 19 17 14
22 22 H 1.48495 * 109.47037 * 180.02562 * 21 19 17
23 23 H 1.48502 * 109.47030 * 300.00244 * 21 19 17
24 24 H 1.48506 * 109.46829 * 60.00554 * 21 19 17
25 25 H 1.08997 * 109.47104 * 158.13543 * 1 2 3
26 26 H 1.09001 * 109.46888 * 278.13483 * 1 2 3
27 27 H 1.08999 * 109.46960 * 38.13345 * 1 2 3
28 28 H 1.00904 * 110.99894 * 56.04834 * 4 2 1
29 29 H 1.00899 * 111.00140 * 179.97438 * 4 2 1
30 30 H 1.07999 * 122.54232 * 359.96231 * 8 7 5
31 31 H 1.08002 * 125.20041 * 179.97438 * 9 8 7
32 32 H 1.08002 * 125.20137 * 0.02562 * 11 7 5
33 33 H 1.08999 * 109.46862 * 310.62103 * 13 12 5
34 34 H 1.08991 * 109.47023 * 70.62249 * 13 12 5
35 35 H 1.09004 * 109.47032 * 190.62300 * 13 12 5
36 36 H 1.08994 * 109.47000 * 181.47757 * 16 14 12
37 37 H 1.09007 * 109.47035 * 301.47099 * 16 14 12
38 38 H 1.08998 * 109.47572 * 61.46683 * 16 14 12
39 39 H 0.97003 * 119.99449 * 4.45422 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 7 2.0197 -0.6925 1.1995
5 6 2.0400 -0.7213 -1.2492
6 1 1.6063 -1.7202 -1.2946
7 6 3.5421 -0.8279 -1.1897
8 6 4.1948 -2.0274 -0.9626
9 6 5.5261 -1.9473 -0.9408
10 16 6.0215 -0.2825 -1.2176
11 6 4.3434 0.2251 -1.3572
12 7 1.6502 0.0366 -2.4457
13 6 0.2337 -0.1815 -2.7687
14 6 2.5090 -0.3039 -3.5877
15 1 3.5542 -0.1708 -3.3087
16 6 2.2698 -1.7608 -3.9892
17 6 2.1805 0.5977 -4.7498
18 1 1.3400 1.2730 -4.6885
19 6 2.9531 0.5603 -5.8912
20 7 4.0689 -0.1356 -5.9075
21 14 2.4149 1.4982 -7.4144
22 1 3.4107 1.2966 -8.4974
23 1 1.0901 0.9979 -7.8614
24 1 2.3159 2.9452 -7.0955
25 1 -0.3633 -0.9537 -0.3827
26 1 -0.3633 0.1454 1.0173
27 1 -0.3633 0.8083 -0.6346
28 1 1.6442 -1.6274 1.2559
29 1 3.0284 -0.7063 1.2225
30 1 3.6662 -2.9574 -0.8141
31 1 6.1971 -2.7777 -0.7773
32 1 4.0123 1.2354 -1.5471
33 1 0.0219 -1.2508 -2.7698
34 1 -0.3892 0.3115 -2.0224
35 1 0.0176 0.2328 -3.7535
36 1 2.9259 -2.0212 -4.8196
37 1 2.4824 -2.4111 -3.1405
38 1 1.2308 -1.8881 -4.2931
39 1 4.3157 -0.6744 -5.1395
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000063085429.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:48:44
Heat of formation + Delta-G solvation = 51.459383 kcal
Electronic energy + Delta-G solvation = -19832.980854 eV
Core-core repulsion = 17095.835580 eV
Total energy + Delta-G solvation = -2737.145273 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 268.130 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-39.63412 -36.29372 -35.19725 -32.59147 -29.78795 -29.28700 -27.75741 -26.82878
-24.94358 -24.00035 -22.63469 -20.44454 -19.58692 -18.21205 -17.44935 -16.57889
-15.89426 -15.49582 -14.64719 -14.34683 -13.84773 -13.63444 -13.38466 -12.89283
-12.81282 -12.43380 -12.27834 -12.13181 -11.93719 -11.72469 -11.34159 -11.16332
-11.06651 -10.81300 -10.69980 -10.65744 -10.25822 -10.22021 -10.08176 -9.80386
-8.82173 -8.48937 -8.35037 -8.07999 -7.92491 -7.27499 -6.30087 -3.99234
1.37765 2.01947 2.33968 3.02221 3.44553 3.45615 3.64340 4.51564
4.70532 4.89981 5.15796 5.36399 5.38643 5.47064 5.55589 5.60541
5.81677 5.85815 6.01610 6.03052 6.08577 6.24990 6.29536 6.41646
6.47086 6.52031 6.58578 6.71188 6.79338 6.86087 6.88957 7.17677
7.30926 7.42059 7.61232 7.89294 8.10831 8.43420 8.62756 8.93558
9.69868 11.06860
Molecular weight = 268.13amu
Principal moments of inertia in cm(-1)
A = 0.017191 B = 0.008364 C = 0.006290
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1628.334417 B = 3347.074546 C = 4450.283744
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.101 3.899
3 H 0.086 0.914
4 N -0.840 5.840
5 C 0.112 3.888
6 H 0.036 0.964
7 C -0.104 4.104
8 C -0.126 4.126
9 C -0.223 4.223
10 S 0.084 5.916
11 C -0.162 4.162
12 N -0.515 5.515
13 C 0.016 3.984
14 C 0.191 3.809
15 H 0.051 0.949
16 C -0.171 4.171
17 C -0.583 4.583
18 H 0.054 0.946
19 C 0.019 3.981
20 N -0.912 5.912
21 Si 1.065 2.935
22 H -0.284 1.284
23 H -0.290 1.290
24 H -0.289 1.289
25 H 0.047 0.953
26 H 0.056 0.944
27 H 0.074 0.926
28 H 0.331 0.669
29 H 0.340 0.660
30 H 0.129 0.871
31 H 0.158 0.842
32 H 0.168 0.832
33 H 0.009 0.991
34 H 0.065 0.935
35 H 0.076 0.924
36 H 0.054 0.946
37 H 0.014 0.986
38 H 0.036 0.964
39 H 0.270 0.730
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.287 -2.771 11.463 11.863
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.011 4.011
3 H 0.104 0.896
4 N -0.368 5.368
5 C -0.001 4.001
6 H 0.054 0.946
7 C -0.116 4.116
8 C -0.158 4.158
9 C -0.358 4.358
10 S 0.348 5.652
11 C -0.298 4.298
12 N -0.238 5.238
13 C -0.132 4.132
14 C 0.084 3.916
15 H 0.069 0.931
16 C -0.230 4.230
17 C -0.621 4.621
18 H 0.073 0.927
19 C -0.185 4.185
20 N -0.549 5.549
21 Si 0.894 3.106
22 H -0.210 1.210
23 H -0.217 1.217
24 H -0.215 1.215
25 H 0.067 0.933
26 H 0.075 0.925
27 H 0.093 0.907
28 H 0.142 0.858
29 H 0.153 0.847
30 H 0.147 0.853
31 H 0.175 0.825
32 H 0.185 0.815
33 H 0.028 0.972
34 H 0.083 0.917
35 H 0.095 0.905
36 H 0.073 0.927
37 H 0.034 0.966
38 H 0.055 0.945
39 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges 0.285 -0.536 10.340 10.358
hybrid contribution -1.450 -2.941 0.465 3.312
sum -1.166 -3.477 10.805 11.410
Atomic orbital electron populations
1.22145 0.94932 1.01866 1.01498 1.21428 0.94975 0.98497 0.86239
0.89631 1.59211 1.14120 1.23030 1.40397 1.21237 0.89164 0.95648
0.94079 0.94625 1.18714 0.96520 0.92144 1.04177 1.19996 0.93540
0.98415 1.03806 1.25405 0.98807 1.00031 1.11547 1.84163 1.08584
1.01936 1.70524 1.25472 0.94039 1.03841 1.06418 1.62318 1.03263
1.54089 1.04134 1.22783 0.89977 0.97848 1.02610 1.19657 0.93866
0.90412 0.87678 0.93129 1.22487 1.00452 1.00630 0.99479 1.21891
1.16903 1.23613 0.99734 0.92747 1.25680 0.93487 0.98231 1.01089
1.70787 1.20890 1.28688 1.34525 0.83590 0.75501 0.75685 0.75800
1.20957 1.21669 1.21518 0.93349 0.92488 0.90721 0.85756 0.84727
0.85325 0.82459 0.81464 0.97247 0.91666 0.90507 0.92663 0.96649
0.94484 0.91898
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.97 7.88 37.16 0.29 -1.68 16
2 C 0.10 1.48 3.15 -67.71 -0.21 1.27 16
3 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16
4 N -0.84 -10.85 9.16 -4.66 -0.04 -10.89 16
5 C 0.11 1.90 1.13 -68.86 -0.08 1.82 16
6 H 0.04 0.63 7.00 -51.93 -0.36 0.27 16
7 C -0.10 -1.75 1.73 -106.25 -0.18 -1.93 16
8 C -0.13 -1.94 9.44 -41.21 -0.39 -2.33 16
9 C -0.22 -3.22 11.23 29.04 0.33 -2.90 16
10 S 0.08 1.31 23.34 -107.50 -2.51 -1.20 16
11 C -0.16 -2.85 8.53 29.04 0.25 -2.60 16
12 N -0.51 -10.39 4.41 -229.68 -1.01 -11.40 16
13 C 0.02 0.30 7.48 60.07 0.45 0.75 16
14 C 0.19 4.57 1.40 -68.86 -0.10 4.47 16
15 H 0.05 1.30 4.26 -51.93 -0.22 1.08 16
16 C -0.17 -4.02 8.18 37.16 0.30 -3.72 16
17 C -0.58 -15.80 7.80 -34.44 -0.27 -16.07 16
18 H 0.05 1.49 6.71 -52.49 -0.35 1.14 16
19 C 0.02 0.54 5.24 -17.82 -0.09 0.45 16
20 N -0.91 -27.01 13.16 55.43 0.73 -26.28 16
21 Si 1.07 25.11 29.91 -169.99 -5.08 20.03 16
22 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16
23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16
24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16
25 H 0.05 0.64 7.31 -51.93 -0.38 0.26 16
26 H 0.06 0.71 8.11 -51.93 -0.42 0.29 16
27 H 0.07 1.03 5.96 -51.93 -0.31 0.72 16
28 H 0.33 3.89 8.98 -39.29 -0.35 3.54 16
29 H 0.34 4.44 7.74 -39.29 -0.30 4.13 16
30 H 0.13 1.80 8.06 -52.49 -0.42 1.37 16
31 H 0.16 1.86 8.06 -52.49 -0.42 1.44 16
32 H 0.17 3.14 8.06 -52.49 -0.42 2.72 16
33 H 0.01 0.17 6.87 -51.93 -0.36 -0.19 16
34 H 0.07 1.05 4.25 -51.93 -0.22 0.83 16
35 H 0.08 1.61 6.17 -51.93 -0.32 1.29 16
36 H 0.05 1.43 6.47 -51.93 -0.34 1.09 16
37 H 0.01 0.32 6.33 -51.93 -0.33 -0.01 16
38 H 0.04 0.86 6.79 -51.93 -0.35 0.50 16
39 H 0.27 8.00 5.92 -40.82 -0.24 7.76 16
LS Contribution 305.67 15.07 4.61 4.61
Total: -1.00 -28.72 305.67 -8.37 -37.09
By element:
Atomic # 1 Polarization: 15.88 SS G_CDS: -5.35 Total: 10.53 kcal
Atomic # 6 Polarization: -22.77 SS G_CDS: 0.30 Total: -22.47 kcal
Atomic # 7 Polarization: -48.25 SS G_CDS: -0.33 Total: -48.57 kcal
Atomic # 14 Polarization: 25.11 SS G_CDS: -5.08 Total: 20.03 kcal
Atomic # 16 Polarization: 1.31 SS G_CDS: -2.51 Total: -1.20 kcal
Total LS contribution 4.61 Total: 4.61 kcal
Total: -28.72 -8.37 -37.09 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000063085429.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.546 kcal
(2) G-P(sol) polarization free energy of solvation -28.721 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.825 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.087 kcal
(6) G-S(sol) free energy of system = (1) + (5) 51.459 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds