Wall clock time and date at job start Mon Mar 30 2020 06:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47184 * 2 1 4 4 N 1.46903 * 109.47330 * 119.99916 * 2 1 3 5 5 C 1.52999 * 109.47105 * 239.99904 * 2 1 3 6 6 H 1.08994 * 109.47409 * 304.93702 * 5 2 1 7 7 C 1.50706 * 109.47114 * 184.93246 * 5 2 1 8 8 C 1.38426 * 122.53340 * 108.51765 * 7 5 2 9 9 C 1.33393 * 114.91784 * 179.97438 * 8 7 5 10 10 S 1.75885 * 109.59218 * 0.02562 * 9 8 7 11 11 C 1.33382 * 122.54378 * 288.23467 * 7 5 2 12 12 N 1.46898 * 109.47111 * 64.94104 * 5 2 1 13 13 C 1.46910 * 110.99619 * 282.55295 * 12 5 2 14 14 C 1.46898 * 111.00500 * 158.59730 * 12 5 2 15 15 H 1.08992 * 109.47100 * 306.17010 * 14 12 5 16 16 C 1.53003 * 109.46935 * 66.17231 * 14 12 5 17 17 C 1.50700 * 109.47266 * 186.16698 * 14 12 5 18 18 H 1.07999 * 120.00081 * 353.23260 * 17 14 12 19 19 C 1.37880 * 119.99799 * 173.23037 * 17 14 12 20 20 N 1.31510 * 120.00306 * 351.59263 * 19 17 14 21 21 Si 1.86804 * 119.99862 * 171.58930 * 19 17 14 22 22 H 1.48495 * 109.47037 * 180.02562 * 21 19 17 23 23 H 1.48502 * 109.47030 * 300.00244 * 21 19 17 24 24 H 1.48506 * 109.46829 * 60.00554 * 21 19 17 25 25 H 1.08997 * 109.47104 * 158.13543 * 1 2 3 26 26 H 1.09001 * 109.46888 * 278.13483 * 1 2 3 27 27 H 1.08999 * 109.46960 * 38.13345 * 1 2 3 28 28 H 1.00904 * 110.99894 * 56.04834 * 4 2 1 29 29 H 1.00899 * 111.00140 * 179.97438 * 4 2 1 30 30 H 1.07999 * 122.54232 * 359.96231 * 8 7 5 31 31 H 1.08002 * 125.20041 * 179.97438 * 9 8 7 32 32 H 1.08002 * 125.20137 * 0.02562 * 11 7 5 33 33 H 1.08999 * 109.46862 * 310.62103 * 13 12 5 34 34 H 1.08991 * 109.47023 * 70.62249 * 13 12 5 35 35 H 1.09004 * 109.47032 * 190.62300 * 13 12 5 36 36 H 1.08994 * 109.47000 * 181.47757 * 16 14 12 37 37 H 1.09007 * 109.47035 * 301.47099 * 16 14 12 38 38 H 1.08998 * 109.47572 * 61.46683 * 16 14 12 39 39 H 0.97003 * 119.99449 * 4.45422 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0400 -0.7213 -1.2492 6 1 1.6063 -1.7202 -1.2946 7 6 3.5421 -0.8279 -1.1897 8 6 4.1948 -2.0274 -0.9626 9 6 5.5261 -1.9473 -0.9408 10 16 6.0215 -0.2825 -1.2176 11 6 4.3434 0.2251 -1.3572 12 7 1.6502 0.0366 -2.4457 13 6 0.2337 -0.1815 -2.7687 14 6 2.5090 -0.3039 -3.5877 15 1 3.5542 -0.1708 -3.3087 16 6 2.2698 -1.7608 -3.9892 17 6 2.1805 0.5977 -4.7498 18 1 1.3400 1.2730 -4.6885 19 6 2.9531 0.5603 -5.8912 20 7 4.0689 -0.1356 -5.9075 21 14 2.4149 1.4982 -7.4144 22 1 3.4107 1.2966 -8.4974 23 1 1.0901 0.9979 -7.8614 24 1 2.3159 2.9452 -7.0955 25 1 -0.3633 -0.9537 -0.3827 26 1 -0.3633 0.1454 1.0173 27 1 -0.3633 0.8083 -0.6346 28 1 1.6442 -1.6274 1.2559 29 1 3.0284 -0.7063 1.2225 30 1 3.6662 -2.9574 -0.8141 31 1 6.1971 -2.7777 -0.7773 32 1 4.0123 1.2354 -1.5471 33 1 0.0219 -1.2508 -2.7698 34 1 -0.3892 0.3115 -2.0224 35 1 0.0176 0.2328 -3.7535 36 1 2.9259 -2.0212 -4.8196 37 1 2.4824 -2.4111 -3.1405 38 1 1.2308 -1.8881 -4.2931 39 1 4.3157 -0.6744 -5.1395 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063085429.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:44 Heat of formation + Delta-G solvation = 51.459383 kcal Electronic energy + Delta-G solvation = -19832.980854 eV Core-core repulsion = 17095.835580 eV Total energy + Delta-G solvation = -2737.145273 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.63412 -36.29372 -35.19725 -32.59147 -29.78795 -29.28700 -27.75741 -26.82878 -24.94358 -24.00035 -22.63469 -20.44454 -19.58692 -18.21205 -17.44935 -16.57889 -15.89426 -15.49582 -14.64719 -14.34683 -13.84773 -13.63444 -13.38466 -12.89283 -12.81282 -12.43380 -12.27834 -12.13181 -11.93719 -11.72469 -11.34159 -11.16332 -11.06651 -10.81300 -10.69980 -10.65744 -10.25822 -10.22021 -10.08176 -9.80386 -8.82173 -8.48937 -8.35037 -8.07999 -7.92491 -7.27499 -6.30087 -3.99234 1.37765 2.01947 2.33968 3.02221 3.44553 3.45615 3.64340 4.51564 4.70532 4.89981 5.15796 5.36399 5.38643 5.47064 5.55589 5.60541 5.81677 5.85815 6.01610 6.03052 6.08577 6.24990 6.29536 6.41646 6.47086 6.52031 6.58578 6.71188 6.79338 6.86087 6.88957 7.17677 7.30926 7.42059 7.61232 7.89294 8.10831 8.43420 8.62756 8.93558 9.69868 11.06860 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.017191 B = 0.008364 C = 0.006290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.334417 B = 3347.074546 C = 4450.283744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.101 3.899 3 H 0.086 0.914 4 N -0.840 5.840 5 C 0.112 3.888 6 H 0.036 0.964 7 C -0.104 4.104 8 C -0.126 4.126 9 C -0.223 4.223 10 S 0.084 5.916 11 C -0.162 4.162 12 N -0.515 5.515 13 C 0.016 3.984 14 C 0.191 3.809 15 H 0.051 0.949 16 C -0.171 4.171 17 C -0.583 4.583 18 H 0.054 0.946 19 C 0.019 3.981 20 N -0.912 5.912 21 Si 1.065 2.935 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.289 1.289 25 H 0.047 0.953 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.331 0.669 29 H 0.340 0.660 30 H 0.129 0.871 31 H 0.158 0.842 32 H 0.168 0.832 33 H 0.009 0.991 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.014 0.986 38 H 0.036 0.964 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.287 -2.771 11.463 11.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.011 4.011 3 H 0.104 0.896 4 N -0.368 5.368 5 C -0.001 4.001 6 H 0.054 0.946 7 C -0.116 4.116 8 C -0.158 4.158 9 C -0.358 4.358 10 S 0.348 5.652 11 C -0.298 4.298 12 N -0.238 5.238 13 C -0.132 4.132 14 C 0.084 3.916 15 H 0.069 0.931 16 C -0.230 4.230 17 C -0.621 4.621 18 H 0.073 0.927 19 C -0.185 4.185 20 N -0.549 5.549 21 Si 0.894 3.106 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.215 1.215 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.142 0.858 29 H 0.153 0.847 30 H 0.147 0.853 31 H 0.175 0.825 32 H 0.185 0.815 33 H 0.028 0.972 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.034 0.966 38 H 0.055 0.945 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.285 -0.536 10.340 10.358 hybrid contribution -1.450 -2.941 0.465 3.312 sum -1.166 -3.477 10.805 11.410 Atomic orbital electron populations 1.22145 0.94932 1.01866 1.01498 1.21428 0.94975 0.98497 0.86239 0.89631 1.59211 1.14120 1.23030 1.40397 1.21237 0.89164 0.95648 0.94079 0.94625 1.18714 0.96520 0.92144 1.04177 1.19996 0.93540 0.98415 1.03806 1.25405 0.98807 1.00031 1.11547 1.84163 1.08584 1.01936 1.70524 1.25472 0.94039 1.03841 1.06418 1.62318 1.03263 1.54089 1.04134 1.22783 0.89977 0.97848 1.02610 1.19657 0.93866 0.90412 0.87678 0.93129 1.22487 1.00452 1.00630 0.99479 1.21891 1.16903 1.23613 0.99734 0.92747 1.25680 0.93487 0.98231 1.01089 1.70787 1.20890 1.28688 1.34525 0.83590 0.75501 0.75685 0.75800 1.20957 1.21669 1.21518 0.93349 0.92488 0.90721 0.85756 0.84727 0.85325 0.82459 0.81464 0.97247 0.91666 0.90507 0.92663 0.96649 0.94484 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 7.88 37.16 0.29 -1.68 16 2 C 0.10 1.48 3.15 -67.71 -0.21 1.27 16 3 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 4 N -0.84 -10.85 9.16 -4.66 -0.04 -10.89 16 5 C 0.11 1.90 1.13 -68.86 -0.08 1.82 16 6 H 0.04 0.63 7.00 -51.93 -0.36 0.27 16 7 C -0.10 -1.75 1.73 -106.25 -0.18 -1.93 16 8 C -0.13 -1.94 9.44 -41.21 -0.39 -2.33 16 9 C -0.22 -3.22 11.23 29.04 0.33 -2.90 16 10 S 0.08 1.31 23.34 -107.50 -2.51 -1.20 16 11 C -0.16 -2.85 8.53 29.04 0.25 -2.60 16 12 N -0.51 -10.39 4.41 -229.68 -1.01 -11.40 16 13 C 0.02 0.30 7.48 60.07 0.45 0.75 16 14 C 0.19 4.57 1.40 -68.86 -0.10 4.47 16 15 H 0.05 1.30 4.26 -51.93 -0.22 1.08 16 16 C -0.17 -4.02 8.18 37.16 0.30 -3.72 16 17 C -0.58 -15.80 7.80 -34.44 -0.27 -16.07 16 18 H 0.05 1.49 6.71 -52.49 -0.35 1.14 16 19 C 0.02 0.54 5.24 -17.82 -0.09 0.45 16 20 N -0.91 -27.01 13.16 55.43 0.73 -26.28 16 21 Si 1.07 25.11 29.91 -169.99 -5.08 20.03 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 H 0.05 0.64 7.31 -51.93 -0.38 0.26 16 26 H 0.06 0.71 8.11 -51.93 -0.42 0.29 16 27 H 0.07 1.03 5.96 -51.93 -0.31 0.72 16 28 H 0.33 3.89 8.98 -39.29 -0.35 3.54 16 29 H 0.34 4.44 7.74 -39.29 -0.30 4.13 16 30 H 0.13 1.80 8.06 -52.49 -0.42 1.37 16 31 H 0.16 1.86 8.06 -52.49 -0.42 1.44 16 32 H 0.17 3.14 8.06 -52.49 -0.42 2.72 16 33 H 0.01 0.17 6.87 -51.93 -0.36 -0.19 16 34 H 0.07 1.05 4.25 -51.93 -0.22 0.83 16 35 H 0.08 1.61 6.17 -51.93 -0.32 1.29 16 36 H 0.05 1.43 6.47 -51.93 -0.34 1.09 16 37 H 0.01 0.32 6.33 -51.93 -0.33 -0.01 16 38 H 0.04 0.86 6.79 -51.93 -0.35 0.50 16 39 H 0.27 8.00 5.92 -40.82 -0.24 7.76 16 LS Contribution 305.67 15.07 4.61 4.61 Total: -1.00 -28.72 305.67 -8.37 -37.09 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -5.35 Total: 10.53 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: 0.30 Total: -22.47 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: -0.33 Total: -48.57 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.08 Total: 20.03 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -2.51 Total: -1.20 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.72 -8.37 -37.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063085429.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.546 kcal (2) G-P(sol) polarization free energy of solvation -28.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds