Wall clock time and date at job start Mon Mar 30 2020 06:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47184 * 2 1 4 4 N 1.46903 * 109.47330 * 119.99916 * 2 1 3 5 5 C 1.52999 * 109.47105 * 239.99904 * 2 1 3 6 6 H 1.08994 * 109.47409 * 304.93702 * 5 2 1 7 7 C 1.50706 * 109.47114 * 184.93246 * 5 2 1 8 8 C 1.38426 * 122.53340 * 108.51765 * 7 5 2 9 9 C 1.33393 * 114.91784 * 179.97438 * 8 7 5 10 10 S 1.75885 * 109.59218 * 0.02562 * 9 8 7 11 11 C 1.33382 * 122.54378 * 288.23467 * 7 5 2 12 12 N 1.46898 * 109.47111 * 64.94104 * 5 2 1 13 13 C 1.46910 * 110.99619 * 282.55295 * 12 5 2 14 14 C 1.46898 * 111.00500 * 158.59730 * 12 5 2 15 15 H 1.08992 * 109.47100 * 306.17010 * 14 12 5 16 16 C 1.53003 * 109.46935 * 66.17231 * 14 12 5 17 17 C 1.50700 * 109.47266 * 186.16698 * 14 12 5 18 18 H 1.07999 * 120.00081 * 353.23260 * 17 14 12 19 19 C 1.37880 * 119.99799 * 173.23037 * 17 14 12 20 20 N 1.31510 * 120.00306 * 351.59263 * 19 17 14 21 21 Si 1.86804 * 119.99862 * 171.58930 * 19 17 14 22 22 H 1.48495 * 109.47037 * 180.02562 * 21 19 17 23 23 H 1.48502 * 109.47030 * 300.00244 * 21 19 17 24 24 H 1.48506 * 109.46829 * 60.00554 * 21 19 17 25 25 H 1.08997 * 109.47104 * 158.13543 * 1 2 3 26 26 H 1.09001 * 109.46888 * 278.13483 * 1 2 3 27 27 H 1.08999 * 109.46960 * 38.13345 * 1 2 3 28 28 H 1.00904 * 110.99894 * 56.04834 * 4 2 1 29 29 H 1.00899 * 111.00140 * 179.97438 * 4 2 1 30 30 H 1.07999 * 122.54232 * 359.96231 * 8 7 5 31 31 H 1.08002 * 125.20041 * 179.97438 * 9 8 7 32 32 H 1.08002 * 125.20137 * 0.02562 * 11 7 5 33 33 H 1.08999 * 109.46862 * 310.62103 * 13 12 5 34 34 H 1.08991 * 109.47023 * 70.62249 * 13 12 5 35 35 H 1.09004 * 109.47032 * 190.62300 * 13 12 5 36 36 H 1.08994 * 109.47000 * 181.47757 * 16 14 12 37 37 H 1.09007 * 109.47035 * 301.47099 * 16 14 12 38 38 H 1.08998 * 109.47572 * 61.46683 * 16 14 12 39 39 H 0.97003 * 119.99449 * 4.45422 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0400 -0.7213 -1.2492 6 1 1.6063 -1.7202 -1.2946 7 6 3.5421 -0.8279 -1.1897 8 6 4.1948 -2.0274 -0.9626 9 6 5.5261 -1.9473 -0.9408 10 16 6.0215 -0.2825 -1.2176 11 6 4.3434 0.2251 -1.3572 12 7 1.6502 0.0366 -2.4457 13 6 0.2337 -0.1815 -2.7687 14 6 2.5090 -0.3039 -3.5877 15 1 3.5542 -0.1708 -3.3087 16 6 2.2698 -1.7608 -3.9892 17 6 2.1805 0.5977 -4.7498 18 1 1.3400 1.2730 -4.6885 19 6 2.9531 0.5603 -5.8912 20 7 4.0689 -0.1356 -5.9075 21 14 2.4149 1.4982 -7.4144 22 1 3.4107 1.2966 -8.4974 23 1 1.0901 0.9979 -7.8614 24 1 2.3159 2.9452 -7.0955 25 1 -0.3633 -0.9537 -0.3827 26 1 -0.3633 0.1454 1.0173 27 1 -0.3633 0.8083 -0.6346 28 1 1.6442 -1.6274 1.2559 29 1 3.0284 -0.7063 1.2225 30 1 3.6662 -2.9574 -0.8141 31 1 6.1971 -2.7777 -0.7773 32 1 4.0123 1.2354 -1.5471 33 1 0.0219 -1.2508 -2.7698 34 1 -0.3892 0.3115 -2.0224 35 1 0.0176 0.2328 -3.7535 36 1 2.9259 -2.0212 -4.8196 37 1 2.4824 -2.4111 -3.1405 38 1 1.2308 -1.8881 -4.2931 39 1 4.3157 -0.6744 -5.1395 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063085429.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:43 Heat of formation + Delta-G solvation = 31.893208 kcal Electronic energy + Delta-G solvation = -19833.829307 eV Core-core repulsion = 17095.835580 eV Total energy + Delta-G solvation = -2737.993726 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.04289 -37.73298 -36.62845 -34.45629 -31.06508 -30.86028 -29.17219 -28.24204 -26.91567 -25.60019 -23.99399 -21.96549 -21.07821 -19.56120 -18.83907 -18.40261 -17.28571 -16.79053 -16.14829 -15.67732 -15.65513 -15.21738 -14.73496 -14.40177 -14.13375 -13.91121 -13.72344 -13.52909 -13.33007 -13.29200 -13.08295 -12.78205 -12.58069 -12.54691 -12.34004 -12.03969 -11.96003 -11.82018 -11.54403 -11.33249 -10.65459 -10.33062 -9.71033 -9.53816 -9.23628 -8.88252 -8.50825 -6.19415 0.12267 0.78099 1.09407 1.52842 1.59606 1.75785 1.78347 2.58733 3.22306 3.30931 3.74557 3.87168 4.14454 4.20538 4.22883 4.42555 4.51647 4.57096 4.59707 4.60869 4.70239 4.71895 4.75520 4.93829 5.01985 5.08597 5.09349 5.26673 5.29656 5.42573 5.47169 5.55722 5.57486 5.98084 6.17385 6.23163 6.57786 6.61181 6.61969 6.85905 7.56746 8.86494 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.017191 B = 0.008364 C = 0.006290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.334417 B = 3347.074546 C = 4450.283744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.110 3.890 3 H 0.067 0.933 4 N -0.831 5.831 5 C 0.116 3.884 6 H 0.036 0.964 7 C -0.102 4.102 8 C -0.141 4.141 9 C -0.209 4.209 10 S 0.091 5.909 11 C -0.192 4.192 12 N -0.523 5.523 13 C 0.019 3.981 14 C 0.196 3.804 15 H 0.035 0.965 16 C -0.155 4.155 17 C -0.589 4.589 18 H 0.046 0.954 19 C -0.029 4.029 20 N -0.937 5.937 21 Si 1.107 2.893 22 H -0.288 1.288 23 H -0.275 1.275 24 H -0.275 1.275 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.342 0.658 29 H 0.341 0.659 30 H 0.147 0.853 31 H 0.189 0.811 32 H 0.146 0.854 33 H 0.013 0.987 34 H 0.095 0.905 35 H 0.050 0.950 36 H 0.026 0.974 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.965 -3.543 12.579 13.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.003 4.003 3 H 0.086 0.914 4 N -0.360 5.360 5 C 0.003 3.997 6 H 0.054 0.946 7 C -0.115 4.115 8 C -0.172 4.172 9 C -0.344 4.344 10 S 0.355 5.645 11 C -0.329 4.329 12 N -0.247 5.247 13 C -0.129 4.129 14 C 0.088 3.912 15 H 0.052 0.948 16 C -0.215 4.215 17 C -0.627 4.627 18 H 0.064 0.936 19 C -0.227 4.227 20 N -0.575 5.575 21 Si 0.930 3.070 22 H -0.214 1.214 23 H -0.200 1.200 24 H -0.201 1.201 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.154 0.846 29 H 0.153 0.847 30 H 0.165 0.835 31 H 0.206 0.794 32 H 0.164 0.836 33 H 0.032 0.968 34 H 0.113 0.887 35 H 0.069 0.931 36 H 0.045 0.955 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.412 -1.311 11.490 11.572 hybrid contribution -1.229 -2.716 0.206 2.988 sum -1.641 -4.027 11.696 12.478 Atomic orbital electron populations 1.22079 0.93658 1.01904 1.02308 1.21269 0.95873 0.97405 0.85712 0.91443 1.59179 1.14237 1.23710 1.38848 1.21337 0.89534 0.95421 0.93420 0.94595 1.18840 0.96432 0.92577 1.03615 1.20158 0.94013 0.98464 1.04541 1.25819 0.99050 1.00059 1.09496 1.84095 1.07174 1.02950 1.70291 1.25371 0.95669 1.03341 1.08478 1.62222 1.03413 1.55163 1.03867 1.22803 0.89620 0.98259 1.02184 1.19404 0.93728 0.89923 0.88122 0.94761 1.22297 0.99443 1.00762 0.99017 1.22232 1.16099 1.23492 1.00885 0.93561 1.26913 0.93182 0.98666 1.03965 1.70899 1.22219 1.30157 1.34274 0.83044 0.75630 0.75436 0.72843 1.21398 1.20042 1.20110 0.92796 0.91134 0.91229 0.84577 0.84659 0.83497 0.79374 0.83644 0.96833 0.88684 0.93105 0.95516 0.94713 0.94703 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 7.88 71.98 0.57 -2.91 16 2 C 0.11 3.07 3.15 44.91 0.14 3.22 16 3 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 4 N -0.83 -19.69 9.16 -168.67 -1.54 -21.23 16 5 C 0.12 3.79 1.13 44.17 0.05 3.84 16 6 H 0.04 1.19 7.00 -2.39 -0.02 1.18 16 7 C -0.10 -3.37 1.73 -20.92 -0.04 -3.40 16 8 C -0.14 -4.06 9.44 21.22 0.20 -3.86 16 9 C -0.21 -5.60 11.23 66.72 0.75 -4.85 16 10 S 0.09 2.77 23.34 -56.49 -1.32 1.45 16 11 C -0.19 -6.85 8.53 66.72 0.57 -6.29 16 12 N -0.52 -20.97 4.41 -880.59 -3.89 -24.86 16 13 C 0.02 0.70 7.48 127.69 0.96 1.65 16 14 C 0.20 9.47 1.40 44.17 0.06 9.54 16 15 H 0.03 1.81 4.26 -2.39 -0.01 1.80 16 16 C -0.16 -7.31 8.18 71.98 0.59 -6.72 16 17 C -0.59 -32.32 7.80 25.60 0.20 -32.12 16 18 H 0.05 2.56 6.71 -2.91 -0.02 2.55 16 19 C -0.03 -1.63 5.24 84.66 0.44 -1.18 16 20 N -0.94 -56.47 13.16 21.45 0.28 -56.19 16 21 Si 1.11 50.73 29.91 68.60 2.05 52.78 16 22 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 25 H 0.05 1.27 7.31 -2.39 -0.02 1.25 16 26 H 0.07 1.55 8.11 -2.39 -0.02 1.53 16 27 H 0.07 1.77 5.96 -2.39 -0.01 1.75 16 28 H 0.34 7.05 8.98 -89.69 -0.81 6.25 16 29 H 0.34 8.26 7.74 -89.69 -0.69 7.57 16 30 H 0.15 3.67 8.06 -2.91 -0.02 3.64 16 31 H 0.19 3.80 8.06 -2.91 -0.02 3.78 16 32 H 0.15 5.74 8.06 -2.91 -0.02 5.72 16 33 H 0.01 0.47 6.87 -2.39 -0.02 0.46 16 34 H 0.10 2.90 4.25 -2.39 -0.01 2.89 16 35 H 0.05 2.12 6.17 -2.38 -0.01 2.11 16 36 H 0.03 1.38 6.47 -2.39 -0.02 1.36 16 37 H 0.03 1.45 6.33 -2.38 -0.02 1.43 16 38 H 0.03 1.60 6.79 -2.39 -0.02 1.58 16 39 H 0.26 15.73 5.92 -92.71 -0.55 15.18 16 Total: -1.00 -61.80 305.67 -0.13 -61.93 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: -0.20 Total: 29.19 kcal Atomic # 6 Polarization: -47.57 SS G_CDS: 4.49 Total: -43.08 kcal Atomic # 7 Polarization: -97.13 SS G_CDS: -5.15 Total: -102.28 kcal Atomic # 14 Polarization: 50.73 SS G_CDS: 2.05 Total: 52.78 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -1.32 Total: 1.45 kcal Total: -61.80 -0.13 -61.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063085429.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.825 kcal (2) G-P(sol) polarization free energy of solvation -61.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds