Wall clock time and date at job start Mon Mar 30 2020 06:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47235 * 2 1 4 4 C 1.50696 * 109.47251 * 119.99827 * 2 1 3 5 5 H 1.08002 * 120.00062 * 119.99993 * 4 2 1 6 6 C 1.37871 * 120.00279 * 299.99977 * 4 2 1 7 7 N 1.31518 * 119.99812 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00221 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.46838 * 90.00130 * 8 6 4 10 10 H 1.48502 * 109.47002 * 210.00060 * 8 6 4 11 11 H 1.48494 * 109.46798 * 330.00069 * 8 6 4 12 12 N 1.46899 * 109.47224 * 240.00240 * 2 1 3 13 13 C 1.46898 * 111.00167 * 84.99786 * 12 2 1 14 14 C 1.53004 * 109.46864 * 180.02562 * 13 12 2 15 15 H 1.08998 * 109.47539 * 62.78104 * 14 13 12 16 16 C 1.50700 * 109.46701 * 182.77829 * 14 13 12 17 17 C 1.33395 * 125.20543 * 261.55726 * 16 14 13 18 18 C 1.38423 * 114.92321 * 179.97438 * 17 16 14 19 19 C 1.33385 * 114.92146 * 0.02562 * 18 17 16 20 20 S 1.75883 * 125.20589 * 81.25686 * 16 14 13 21 21 N 1.46898 * 109.47207 * 302.77467 * 14 13 12 22 22 C 1.46905 * 110.99959 * 317.67209 * 21 14 13 23 23 C 1.46905 * 110.99867 * 81.62464 * 21 14 13 24 24 H 1.09008 * 109.47586 * 60.00033 * 1 2 3 25 25 H 1.09003 * 109.47110 * 300.00286 * 1 2 3 26 26 H 1.09002 * 109.47235 * 180.02562 * 1 2 3 27 27 H 0.97002 * 119.99717 * 179.97438 * 7 6 4 28 28 H 1.00904 * 110.99880 * 321.04627 * 12 2 1 29 29 H 1.08996 * 109.47120 * 300.00103 * 13 12 2 30 30 H 1.09000 * 109.47337 * 60.00313 * 13 12 2 31 31 H 1.07998 * 122.53512 * 0.02562 * 17 16 14 32 32 H 1.07999 * 122.53517 * 180.02562 * 18 17 16 33 33 H 1.07994 * 125.20592 * 179.97438 * 19 18 17 34 34 H 1.09000 * 109.46795 * 66.94163 * 22 21 14 35 35 H 1.09000 * 109.46577 * 186.93663 * 22 21 14 36 36 H 1.08990 * 109.47087 * 306.93721 * 22 21 14 37 37 H 1.08998 * 109.46757 * 52.21344 * 23 21 14 38 38 H 1.09001 * 109.46937 * 172.21404 * 23 21 14 39 39 H 1.08996 * 109.46921 * 292.21576 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6033 8 14 2.3214 -1.1203 4.0079 9 1 3.6297 -0.5458 4.4123 10 1 1.3431 -0.9492 5.1120 11 1 2.4859 -2.5661 3.7119 12 7 2.0196 -0.6924 -1.1995 13 6 2.0824 0.2226 -2.3469 14 6 2.5950 -0.5332 -3.5745 15 1 1.8927 -1.3258 -3.8327 16 6 2.7242 0.4208 -4.7339 17 6 1.8267 0.5719 -5.7091 18 6 2.1616 1.5106 -6.6697 19 6 3.3312 2.1215 -6.4749 20 16 4.0779 1.5108 -5.0042 21 7 3.9078 -1.1205 -3.2750 22 6 4.7511 -0.1738 -2.5330 23 6 3.7638 -2.3847 -2.5407 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7090 1.1614 3.4844 28 1 1.4495 -1.4979 -1.4101 29 1 1.0870 0.6163 -2.5525 30 1 2.7588 1.0462 -2.1183 31 1 0.9080 0.0053 -5.7460 32 1 1.5241 1.7316 -7.5130 33 1 3.7532 2.8785 -7.1193 34 1 4.3255 -0.0064 -1.5436 35 1 5.7557 -0.5845 -2.4316 36 1 4.7979 0.7717 -3.0732 37 1 3.0805 -3.0416 -3.0790 38 1 4.7375 -2.8666 -2.4527 39 1 3.3665 -2.1837 -1.5459 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068481369.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:31 Heat of formation + Delta-G solvation = 50.312233 kcal Electronic energy + Delta-G solvation = -18889.328982 eV Core-core repulsion = 16152.133965 eV Total energy + Delta-G solvation = -2737.195018 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.84083 -37.13683 -35.23070 -32.39895 -30.93655 -28.67004 -27.27597 -26.44356 -25.17832 -23.46748 -23.09889 -20.33647 -20.26469 -19.10265 -16.96949 -16.33673 -15.66982 -15.30887 -14.88580 -14.60289 -14.15669 -13.69635 -13.47227 -12.85458 -12.75848 -12.63319 -12.24424 -12.05468 -11.82574 -11.64633 -11.55139 -11.31544 -11.16567 -10.95470 -10.85098 -10.73851 -10.48637 -10.22386 -10.17214 -9.96468 -9.11107 -8.53541 -8.40301 -8.29249 -8.02625 -7.15466 -6.02961 -4.06898 1.17177 1.81580 2.22112 2.87766 3.29703 3.36329 3.39660 4.36346 4.38998 4.78459 5.14663 5.28831 5.29680 5.43891 5.51067 5.59115 5.65195 5.75463 5.93129 6.03888 6.07044 6.20069 6.27981 6.29696 6.44361 6.50365 6.60685 6.63961 6.72837 6.78536 7.05491 7.24923 7.36892 7.40411 7.67960 7.80619 8.19447 8.40580 8.51654 8.99702 9.58790 11.04009 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.029590 B = 0.004787 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.033444 B = 5847.862306 C = 6150.436315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.212 3.788 3 H 0.032 0.968 4 C -0.495 4.495 5 H 0.062 0.938 6 C 0.056 3.944 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.677 5.677 13 C 0.034 3.966 14 C 0.148 3.852 15 H 0.090 0.910 16 C -0.140 4.140 17 C -0.152 4.152 18 C -0.132 4.132 19 C -0.245 4.245 20 S 0.127 5.873 21 N -0.529 5.529 22 C 0.017 3.983 23 C 0.008 3.992 24 H 0.004 0.996 25 H 0.089 0.911 26 H 0.027 0.973 27 H 0.260 0.740 28 H 0.325 0.675 29 H 0.026 0.974 30 H 0.072 0.928 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.156 0.844 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.547 -0.217 -15.103 15.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.104 3.896 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.307 5.307 13 C -0.098 4.098 14 C 0.037 3.963 15 H 0.108 0.892 16 C -0.259 4.259 17 C -0.183 4.183 18 C -0.163 4.163 19 C -0.380 4.380 20 S 0.391 5.609 21 N -0.252 5.252 22 C -0.132 4.132 23 C -0.140 4.140 24 H 0.023 0.977 25 H 0.107 0.893 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.142 0.858 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.152 0.848 32 H 0.150 0.850 33 H 0.173 0.827 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.723 0.202 -14.482 15.574 hybrid contribution -2.484 -0.275 0.492 2.547 sum 3.239 -0.072 -13.991 14.361 Atomic orbital electron populations 1.22413 1.00640 0.99172 1.00519 1.19180 0.89672 0.94377 0.86352 0.95013 1.21102 1.30346 1.12431 0.89516 0.91998 1.24947 0.95271 0.95175 0.99065 1.69886 1.37159 1.23163 1.23389 0.86513 0.78456 0.80004 0.82495 1.20774 1.21433 1.19933 1.61022 1.57263 1.08927 1.03448 1.22608 0.99373 0.96781 0.91000 1.20245 0.91965 0.93867 0.90233 0.89191 1.24505 0.98058 1.02359 1.00971 1.20011 1.01131 1.01900 0.95211 1.20041 0.97142 0.98338 1.00791 1.25887 1.00972 1.07352 1.03834 1.84371 1.22853 1.33961 1.19699 1.62400 1.11644 1.05196 1.45929 1.22553 0.97300 0.94765 0.98534 1.22691 1.01061 0.89893 1.00331 0.97664 0.89267 0.95346 0.93040 0.85822 0.95624 0.91001 0.84763 0.85046 0.82662 0.91507 0.91968 0.92965 0.92954 0.92688 0.89680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.95 8.94 37.15 0.33 -3.62 16 2 C 0.21 5.09 2.57 -68.87 -0.18 4.91 16 3 H 0.03 0.86 7.80 -51.93 -0.40 0.45 16 4 C -0.50 -13.15 8.84 -34.44 -0.30 -13.45 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.52 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -25.26 11.32 55.43 0.63 -24.63 16 8 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 N -0.68 -13.18 2.73 -107.96 -0.30 -13.48 16 13 C 0.03 0.59 4.17 -3.82 -0.02 0.58 16 14 C 0.15 2.22 2.53 -68.86 -0.17 2.04 16 15 H 0.09 1.29 7.72 -51.93 -0.40 0.89 16 16 C -0.14 -2.00 5.46 -36.00 -0.20 -2.20 16 17 C -0.15 -1.98 10.04 -41.21 -0.41 -2.40 16 18 C -0.13 -1.57 10.18 -41.21 -0.42 -1.99 16 19 C -0.25 -2.89 11.23 29.04 0.33 -2.57 16 20 S 0.13 1.69 19.92 -107.50 -2.14 -0.45 16 21 N -0.53 -8.01 4.82 -244.58 -1.18 -9.18 16 22 C 0.02 0.27 8.08 60.07 0.49 0.75 16 23 C 0.01 0.12 9.05 60.07 0.54 0.67 16 24 H 0.00 0.09 7.45 -51.92 -0.39 -0.29 16 25 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 26 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.33 6.07 8.02 -39.29 -0.31 5.75 16 29 H 0.03 0.46 7.44 -51.93 -0.39 0.08 16 30 H 0.07 1.34 6.58 -51.93 -0.34 1.00 16 31 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.07 1.21 6.17 -51.93 -0.32 0.89 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.77 4.60 -35.61 -0.16 0.61 16 37 H 0.05 0.70 7.87 -51.93 -0.41 0.29 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 1.44 5.44 -51.93 -0.28 1.16 16 LS Contribution 315.90 15.07 4.76 4.76 Total: -1.00 -27.34 315.90 -9.16 -36.50 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -5.81 Total: 6.24 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: -0.11 Total: -15.84 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -0.85 Total: -47.29 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.14 Total: -0.45 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.34 -9.16 -36.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068481369.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.812 kcal (2) G-P(sol) polarization free energy of solvation -27.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds