Wall clock time and date at job start Mon Mar 30 2020 06:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47235 * 2 1 4 4 C 1.50696 * 109.47251 * 119.99827 * 2 1 3 5 5 H 1.08002 * 120.00062 * 119.99993 * 4 2 1 6 6 C 1.37871 * 120.00279 * 299.99977 * 4 2 1 7 7 N 1.31518 * 119.99812 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00221 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.46838 * 90.00130 * 8 6 4 10 10 H 1.48502 * 109.47002 * 210.00060 * 8 6 4 11 11 H 1.48494 * 109.46798 * 330.00069 * 8 6 4 12 12 N 1.46899 * 109.47224 * 240.00240 * 2 1 3 13 13 C 1.46898 * 111.00167 * 84.99786 * 12 2 1 14 14 C 1.53004 * 109.46864 * 180.02562 * 13 12 2 15 15 H 1.08998 * 109.47539 * 62.78104 * 14 13 12 16 16 C 1.50700 * 109.46701 * 182.77829 * 14 13 12 17 17 C 1.33395 * 125.20543 * 261.55726 * 16 14 13 18 18 C 1.38423 * 114.92321 * 179.97438 * 17 16 14 19 19 C 1.33385 * 114.92146 * 0.02562 * 18 17 16 20 20 S 1.75883 * 125.20589 * 81.25686 * 16 14 13 21 21 N 1.46898 * 109.47207 * 302.77467 * 14 13 12 22 22 C 1.46905 * 110.99959 * 317.67209 * 21 14 13 23 23 C 1.46905 * 110.99867 * 81.62464 * 21 14 13 24 24 H 1.09008 * 109.47586 * 60.00033 * 1 2 3 25 25 H 1.09003 * 109.47110 * 300.00286 * 1 2 3 26 26 H 1.09002 * 109.47235 * 180.02562 * 1 2 3 27 27 H 0.97002 * 119.99717 * 179.97438 * 7 6 4 28 28 H 1.00904 * 110.99880 * 321.04627 * 12 2 1 29 29 H 1.08996 * 109.47120 * 300.00103 * 13 12 2 30 30 H 1.09000 * 109.47337 * 60.00313 * 13 12 2 31 31 H 1.07998 * 122.53512 * 0.02562 * 17 16 14 32 32 H 1.07999 * 122.53517 * 180.02562 * 18 17 16 33 33 H 1.07994 * 125.20592 * 179.97438 * 19 18 17 34 34 H 1.09000 * 109.46795 * 66.94163 * 22 21 14 35 35 H 1.09000 * 109.46577 * 186.93663 * 22 21 14 36 36 H 1.08990 * 109.47087 * 306.93721 * 22 21 14 37 37 H 1.08998 * 109.46757 * 52.21344 * 23 21 14 38 38 H 1.09001 * 109.46937 * 172.21404 * 23 21 14 39 39 H 1.08996 * 109.46921 * 292.21576 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6033 8 14 2.3214 -1.1203 4.0079 9 1 3.6297 -0.5458 4.4123 10 1 1.3431 -0.9492 5.1120 11 1 2.4859 -2.5661 3.7119 12 7 2.0196 -0.6924 -1.1995 13 6 2.0824 0.2226 -2.3469 14 6 2.5950 -0.5332 -3.5745 15 1 1.8927 -1.3258 -3.8327 16 6 2.7242 0.4208 -4.7339 17 6 1.8267 0.5719 -5.7091 18 6 2.1616 1.5106 -6.6697 19 6 3.3312 2.1215 -6.4749 20 16 4.0779 1.5108 -5.0042 21 7 3.9078 -1.1205 -3.2750 22 6 4.7511 -0.1738 -2.5330 23 6 3.7638 -2.3847 -2.5407 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7090 1.1614 3.4844 28 1 1.4495 -1.4979 -1.4101 29 1 1.0870 0.6163 -2.5525 30 1 2.7588 1.0462 -2.1183 31 1 0.9080 0.0053 -5.7460 32 1 1.5241 1.7316 -7.5130 33 1 3.7532 2.8785 -7.1193 34 1 4.3255 -0.0064 -1.5436 35 1 5.7557 -0.5845 -2.4316 36 1 4.7979 0.7717 -3.0732 37 1 3.0805 -3.0416 -3.0790 38 1 4.7375 -2.8666 -2.4527 39 1 3.3665 -2.1837 -1.5459 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068481369.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:30 Heat of formation + Delta-G solvation = 34.055322 kcal Electronic energy + Delta-G solvation = -18890.033935 eV Core-core repulsion = 16152.133965 eV Total energy + Delta-G solvation = -2737.899970 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.10024 -38.21990 -36.92439 -34.27879 -32.19618 -30.28479 -28.50491 -27.72849 -27.20800 -24.81380 -24.21255 -22.17168 -21.54545 -20.09233 -18.48313 -17.90905 -16.90460 -16.70456 -16.50709 -16.08303 -15.43754 -15.09367 -15.00875 -14.52719 -13.93875 -13.74149 -13.60527 -13.54920 -13.17223 -13.01981 -12.90188 -12.85948 -12.68999 -12.55638 -12.40643 -12.26373 -12.10673 -11.97393 -11.86808 -11.24168 -11.08889 -10.49053 -9.61189 -9.39999 -9.28463 -8.67402 -8.10019 -6.20859 0.18020 0.81975 1.24455 1.42911 1.43981 1.54027 1.92002 2.43429 3.16766 3.19315 3.43355 3.95377 4.12835 4.28271 4.34031 4.38927 4.60456 4.63319 4.72563 4.73985 4.77378 4.82507 4.85466 4.94299 5.05910 5.08926 5.18637 5.28555 5.36834 5.46859 5.50661 5.66185 5.68623 5.78816 6.11597 6.18595 6.24919 6.57301 6.75323 6.93431 7.49130 8.95722 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.029590 B = 0.004787 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.033444 B = 5847.862306 C = 6150.436315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.219 3.781 3 H -0.005 1.005 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.009 3.991 7 N -0.924 5.924 8 Si 0.959 3.041 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.267 1.267 12 N -0.667 5.667 13 C 0.043 3.957 14 C 0.159 3.841 15 H 0.100 0.900 16 C -0.168 4.168 17 C -0.147 4.147 18 C -0.140 4.140 19 C -0.236 4.236 20 S 0.102 5.898 21 N -0.526 5.526 22 C 0.023 3.977 23 C 0.011 3.989 24 H 0.021 0.979 25 H 0.060 0.940 26 H 0.034 0.966 27 H 0.260 0.740 28 H 0.333 0.667 29 H 0.020 0.980 30 H 0.053 0.947 31 H 0.149 0.851 32 H 0.159 0.841 33 H 0.181 0.819 34 H 0.035 0.965 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.646 -0.940 -16.707 17.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.110 3.890 3 H 0.013 0.987 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.189 4.189 7 N -0.565 5.565 8 Si 0.785 3.215 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.191 1.191 12 N -0.297 5.297 13 C -0.088 4.088 14 C 0.048 3.952 15 H 0.118 0.882 16 C -0.287 4.287 17 C -0.178 4.178 18 C -0.171 4.171 19 C -0.371 4.371 20 S 0.365 5.635 21 N -0.248 5.248 22 C -0.126 4.126 23 C -0.137 4.137 24 H 0.040 0.960 25 H 0.079 0.921 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.151 0.849 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.166 0.834 32 H 0.177 0.823 33 H 0.199 0.801 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.830 -0.535 -16.104 17.135 hybrid contribution -2.515 0.001 0.883 2.665 sum 3.315 -0.534 -15.221 15.587 Atomic orbital electron populations 1.22228 1.00118 0.99308 0.99850 1.18903 0.89892 0.92478 0.87720 0.98702 1.21391 1.30166 1.12334 0.90707 0.92387 1.25702 0.95494 0.95846 1.01906 1.70021 1.38170 1.24392 1.23884 0.85541 0.77769 0.79188 0.79002 1.20593 1.21216 1.19128 1.60897 1.56843 1.09040 1.02963 1.22546 0.98694 0.96273 0.91300 1.20114 0.91858 0.93938 0.89293 0.88208 1.24439 0.99219 1.03431 1.01564 1.20333 1.01094 1.01637 0.94730 1.20350 0.97530 0.97848 1.01328 1.26209 1.00669 1.07327 1.02845 1.84400 1.23340 1.34449 1.21290 1.62448 1.11673 1.05182 1.45527 1.22472 0.97669 0.95492 0.96955 1.22654 1.01845 0.90021 0.99138 0.96024 0.92149 0.94644 0.93135 0.84949 0.96190 0.92818 0.83353 0.82345 0.80129 0.94617 0.90932 0.92361 0.91389 0.91817 0.92033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.37 8.94 71.98 0.64 -6.73 16 2 C 0.22 10.75 2.57 44.17 0.11 10.86 16 3 H 0.00 -0.28 7.80 -2.39 -0.02 -0.30 16 4 C -0.51 -27.31 8.84 25.60 0.23 -27.08 16 5 H 0.06 3.11 7.81 -2.91 -0.02 3.08 16 6 C 0.01 0.46 5.30 84.65 0.45 0.91 16 7 N -0.92 -53.06 11.32 21.45 0.24 -52.82 16 8 Si 0.96 43.49 29.54 68.60 2.03 45.52 16 9 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 10 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 12 N -0.67 -26.24 2.73 -495.47 -1.36 -27.59 16 13 C 0.04 1.52 4.17 86.30 0.36 1.88 16 14 C 0.16 4.61 2.53 44.17 0.11 4.72 16 15 H 0.10 2.69 7.72 -2.39 -0.02 2.67 16 16 C -0.17 -4.56 5.46 24.59 0.13 -4.43 16 17 C -0.15 -3.48 10.04 21.22 0.21 -3.27 16 18 C -0.14 -2.91 10.18 21.22 0.22 -2.69 16 19 C -0.24 -4.93 11.23 66.72 0.75 -4.18 16 20 S 0.10 2.58 19.92 -56.49 -1.13 1.45 16 21 N -0.53 -15.45 4.82 -927.72 -4.47 -19.93 16 22 C 0.02 0.72 8.08 127.69 1.03 1.75 16 23 C 0.01 0.32 9.05 127.69 1.16 1.48 16 24 H 0.02 0.91 7.45 -2.38 -0.02 0.89 16 25 H 0.06 3.23 6.07 -2.39 -0.01 3.22 16 26 H 0.03 1.58 8.13 -2.39 -0.02 1.56 16 27 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 28 H 0.33 12.26 8.02 -89.69 -0.72 11.54 16 29 H 0.02 0.72 7.44 -2.39 -0.02 0.70 16 30 H 0.05 2.07 6.58 -2.39 -0.02 2.06 16 31 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 32 H 0.16 2.40 8.06 -2.91 -0.02 2.37 16 33 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 34 H 0.04 1.33 6.17 -2.39 -0.01 1.31 16 35 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.06 1.74 4.60 -12.77 -0.06 1.68 16 37 H 0.07 1.69 7.87 -2.39 -0.02 1.67 16 38 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.06 2.06 5.44 -2.39 -0.01 2.05 16 Total: -1.00 -58.64 315.90 0.99 -57.65 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 0.27 Total: 22.50 kcal Atomic # 6 Polarization: -32.18 SS G_CDS: 5.40 Total: -26.78 kcal Atomic # 7 Polarization: -94.75 SS G_CDS: -5.58 Total: -100.34 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -1.13 Total: 1.45 kcal Total: -58.64 0.99 -57.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068481369.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.703 kcal (2) G-P(sol) polarization free energy of solvation -58.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds