Wall clock time and date at job start Mon Mar 30 2020 06:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.46751 * 2 1 4 4 C 1.50699 * 109.47336 * 119.99233 * 2 1 3 5 5 H 1.08004 * 120.00059 * 120.00003 * 4 2 1 6 6 C 1.37875 * 120.00211 * 300.00567 * 4 2 1 7 7 N 1.31520 * 119.99844 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00201 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47321 * 89.99726 * 8 6 4 10 10 H 1.48501 * 109.47238 * 210.00253 * 8 6 4 11 11 H 1.48504 * 109.46861 * 329.99894 * 8 6 4 12 12 N 1.46894 * 109.47497 * 239.99684 * 2 1 3 13 13 C 1.46903 * 111.00309 * 84.99818 * 12 2 1 14 14 C 1.52996 * 109.47324 * 171.92010 * 13 12 2 15 15 H 1.09001 * 109.47343 * 298.42409 * 14 13 12 16 16 C 1.50704 * 109.47121 * 178.41994 * 14 13 12 17 17 C 1.33390 * 125.20134 * 105.02931 * 16 14 13 18 18 C 1.38424 * 114.92444 * 179.86099 * 17 16 14 19 19 C 1.33393 * 114.91634 * 0.43601 * 18 17 16 20 20 S 1.75881 * 125.20622 * 285.34114 * 16 14 13 21 21 N 1.46900 * 109.47086 * 58.42421 * 14 13 12 22 22 C 1.46901 * 110.99990 * 274.45548 * 21 14 13 23 23 C 1.46903 * 110.99951 * 38.40796 * 21 14 13 24 24 H 1.09005 * 109.47241 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47033 * 60.00839 * 1 2 3 26 26 H 1.08996 * 109.48039 * 300.00191 * 1 2 3 27 27 H 0.97007 * 119.99874 * 180.02562 * 7 6 4 28 28 H 1.00904 * 111.00376 * 321.04493 * 12 2 1 29 29 H 1.09004 * 109.46761 * 291.92381 * 13 12 2 30 30 H 1.09005 * 109.46792 * 51.91554 * 13 12 2 31 31 H 1.08004 * 122.53758 * 0.02628 * 17 16 14 32 32 H 1.07997 * 122.54224 * 180.19944 * 18 17 16 33 33 H 1.07998 * 125.20283 * 179.75740 * 19 18 17 34 34 H 1.08995 * 109.47025 * 65.05397 * 22 21 14 35 35 H 1.09000 * 109.46911 * 185.06145 * 22 21 14 36 36 H 1.09001 * 109.46797 * 305.05313 * 22 21 14 37 37 H 1.08996 * 109.47183 * 63.59411 * 23 21 14 38 38 H 1.09003 * 109.47091 * 183.59015 * 23 21 14 39 39 H 1.08998 * 109.47030 * 303.58901 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7102 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2391 2.4827 7 7 0.9434 0.8304 2.6033 8 14 2.3213 -1.1199 4.0080 9 1 3.6296 -0.5454 4.4124 10 1 1.3430 -0.9489 5.1121 11 1 2.4859 -2.5658 3.7121 12 7 2.0197 -0.6925 -1.1993 13 6 2.0825 0.2225 -2.3469 14 6 2.7813 -0.4736 -3.5165 15 1 3.8012 -0.7300 -3.2299 16 6 2.8112 0.4512 -4.7061 17 6 3.8861 1.1109 -5.1403 18 6 3.6738 1.9018 -6.2564 19 6 2.4242 1.8914 -6.7230 20 16 1.4324 0.8317 -5.7295 21 7 2.0485 -1.6977 -3.8664 22 6 2.4822 -2.8272 -3.0332 23 6 0.5979 -1.4915 -3.7599 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3635 0.5138 0.8899 27 1 0.7093 1.1621 3.4844 28 1 1.4496 -1.4980 -1.4100 29 1 1.0718 0.5039 -2.6428 30 1 2.6418 1.1159 -2.0690 31 1 4.8499 1.0318 -4.6592 32 1 4.4593 2.4861 -6.7123 33 1 2.0749 2.4486 -7.5797 34 1 2.2157 -2.6354 -1.9939 35 1 1.9901 -3.7388 -3.3723 36 1 3.5626 -2.9455 -3.1155 37 1 0.2835 -0.7405 -4.4845 38 1 0.0817 -2.4300 -3.9622 39 1 0.3522 -1.1512 -2.7539 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068481374.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:37 Heat of formation + Delta-G solvation = 59.498494 kcal Electronic energy + Delta-G solvation = -18885.517846 eV Core-core repulsion = 16148.721175 eV Total energy + Delta-G solvation = -2736.796671 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.10588 -37.26620 -35.14220 -32.34662 -31.10402 -28.67463 -27.52783 -26.57231 -25.18892 -23.45075 -23.21600 -20.39780 -20.34756 -19.13660 -17.04575 -16.40051 -15.78813 -15.37516 -15.03054 -14.68285 -14.29223 -13.87881 -13.16784 -12.89237 -12.73991 -12.66289 -12.27480 -12.22365 -12.10663 -11.74533 -11.52034 -11.39430 -11.16570 -11.01673 -10.95667 -10.75109 -10.51972 -10.36418 -10.16209 -9.96166 -9.08534 -8.55144 -8.39314 -8.31851 -8.01006 -7.34861 -6.01783 -4.05625 1.15122 1.78608 2.18394 2.86957 3.30626 3.36946 3.40538 4.16738 4.39877 4.74829 5.12655 5.27065 5.29849 5.39315 5.42354 5.52558 5.62252 5.65643 5.68851 5.77858 6.01772 6.02594 6.12100 6.22349 6.29082 6.37922 6.45513 6.59454 6.62791 6.76886 7.02843 7.17244 7.19418 7.29390 7.66627 7.82254 8.20580 8.40957 8.53453 9.00898 9.59906 11.05181 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.029171 B = 0.004652 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.635037 B = 6016.931344 C = 6203.382425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.210 3.790 3 H 0.034 0.966 4 C -0.496 4.496 5 H 0.062 0.938 6 C 0.056 3.944 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.684 5.684 13 C 0.035 3.965 14 C 0.150 3.850 15 H 0.103 0.897 16 C -0.137 4.137 17 C -0.149 4.149 18 C -0.130 4.130 19 C -0.239 4.239 20 S 0.111 5.889 21 N -0.537 5.537 22 C 0.013 3.987 23 C 0.009 3.991 24 H 0.026 0.974 25 H 0.004 0.996 26 H 0.090 0.910 27 H 0.260 0.740 28 H 0.326 0.674 29 H 0.028 0.972 30 H 0.073 0.927 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.157 0.843 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.498 -0.943 -16.154 16.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.103 3.897 3 H 0.051 0.949 4 C -0.535 4.535 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.319 5.319 13 C -0.097 4.097 14 C 0.039 3.961 15 H 0.121 0.879 16 C -0.256 4.256 17 C -0.179 4.179 18 C -0.161 4.161 19 C -0.374 4.374 20 S 0.374 5.626 21 N -0.260 5.260 22 C -0.135 4.135 23 C -0.140 4.140 24 H 0.045 0.955 25 H 0.023 0.977 26 H 0.109 0.891 27 H 0.070 0.930 28 H 0.148 0.852 29 H 0.046 0.954 30 H 0.091 0.909 31 H 0.155 0.845 32 H 0.151 0.849 33 H 0.174 0.826 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.663 -1.303 -16.360 16.425 hybrid contribution 0.598 0.495 1.398 1.599 sum 1.260 -0.808 -14.961 15.036 Atomic orbital electron populations 1.22434 1.00698 0.99049 1.00572 1.19205 0.89592 0.94484 0.86414 0.94854 1.21124 1.30299 1.12484 0.89549 0.91990 1.24953 0.95275 0.95199 0.99065 1.69887 1.37204 1.23167 1.23389 0.86501 0.78467 0.79996 0.82428 1.20741 1.21412 1.19936 1.61180 1.58178 1.09019 1.03474 1.22533 0.98501 0.97152 0.91495 1.20306 0.99779 0.87609 0.88361 0.87897 1.24498 0.96134 1.03415 1.01567 1.20062 0.99465 1.00089 0.98286 1.20078 0.96883 1.01621 0.97552 1.25754 0.98213 1.07180 1.06236 1.84225 1.13271 1.41567 1.23512 1.62240 1.04450 1.04736 1.54577 1.22672 1.01172 0.92396 0.97280 1.22667 0.88752 1.01738 1.00801 0.95496 0.97704 0.89132 0.93037 0.85193 0.95433 0.90863 0.84453 0.84856 0.82571 0.91826 0.92097 0.91494 0.91890 0.91264 0.93748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.01 8.94 37.15 0.33 -3.68 16 2 C 0.21 5.21 2.57 -68.87 -0.18 5.03 16 3 H 0.03 0.92 7.67 -51.93 -0.40 0.52 16 4 C -0.50 -13.50 8.84 -34.44 -0.30 -13.81 16 5 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 6 C 0.06 1.53 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -25.50 11.32 55.43 0.63 -24.87 16 8 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 12 N -0.68 -13.98 5.18 -107.95 -0.56 -14.54 16 13 C 0.03 0.62 4.31 -3.82 -0.02 0.61 16 14 C 0.15 2.29 2.59 -68.86 -0.18 2.11 16 15 H 0.10 1.60 7.68 -51.93 -0.40 1.20 16 16 C -0.14 -1.96 5.41 -36.00 -0.19 -2.15 16 17 C -0.15 -1.94 10.03 -41.21 -0.41 -2.36 16 18 C -0.13 -1.53 10.18 -41.21 -0.42 -1.95 16 19 C -0.24 -2.76 11.23 29.04 0.33 -2.44 16 20 S 0.11 1.44 20.36 -107.50 -2.19 -0.75 16 21 N -0.54 -7.75 4.82 -244.58 -1.18 -8.93 16 22 C 0.01 0.18 9.18 60.07 0.55 0.73 16 23 C 0.01 0.13 8.24 60.07 0.49 0.62 16 24 H 0.03 0.61 8.13 -51.93 -0.42 0.19 16 25 H 0.00 0.09 7.62 -51.93 -0.40 -0.31 16 26 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 27 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.33 6.33 3.85 -39.29 -0.15 6.18 16 29 H 0.03 0.50 5.98 -51.93 -0.31 0.19 16 30 H 0.07 1.40 7.85 -51.93 -0.41 0.99 16 31 H 0.14 1.61 8.06 -52.48 -0.42 1.19 16 32 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 33 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.06 1.01 4.73 -51.93 -0.25 0.76 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.89 7.93 -51.93 -0.41 0.47 16 37 H 0.06 0.86 5.16 -46.68 -0.24 0.62 16 38 H 0.07 0.86 8.11 -51.93 -0.42 0.44 16 39 H 0.04 0.71 4.63 -51.93 -0.24 0.46 16 LS Contribution 313.21 15.07 4.72 4.72 Total: -1.00 -28.15 313.21 -9.29 -37.44 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -5.60 Total: 6.47 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -0.09 Total: -15.84 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: -1.11 Total: -48.34 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.19 Total: -0.75 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.15 -9.29 -37.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068481374.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.943 kcal (2) G-P(sol) polarization free energy of solvation -28.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds