Wall clock time and date at job start Mon Mar 30 2020 06:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.46751 * 2 1 4 4 C 1.50699 * 109.47336 * 119.99233 * 2 1 3 5 5 H 1.08004 * 120.00059 * 120.00003 * 4 2 1 6 6 C 1.37875 * 120.00211 * 300.00567 * 4 2 1 7 7 N 1.31520 * 119.99844 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00201 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47321 * 89.99726 * 8 6 4 10 10 H 1.48501 * 109.47238 * 210.00253 * 8 6 4 11 11 H 1.48504 * 109.46861 * 329.99894 * 8 6 4 12 12 N 1.46894 * 109.47497 * 239.99684 * 2 1 3 13 13 C 1.46903 * 111.00309 * 84.99818 * 12 2 1 14 14 C 1.52996 * 109.47324 * 171.92010 * 13 12 2 15 15 H 1.09001 * 109.47343 * 298.42409 * 14 13 12 16 16 C 1.50704 * 109.47121 * 178.41994 * 14 13 12 17 17 C 1.33390 * 125.20134 * 105.02931 * 16 14 13 18 18 C 1.38424 * 114.92444 * 179.86099 * 17 16 14 19 19 C 1.33393 * 114.91634 * 0.43601 * 18 17 16 20 20 S 1.75881 * 125.20622 * 285.34114 * 16 14 13 21 21 N 1.46900 * 109.47086 * 58.42421 * 14 13 12 22 22 C 1.46901 * 110.99990 * 274.45548 * 21 14 13 23 23 C 1.46903 * 110.99951 * 38.40796 * 21 14 13 24 24 H 1.09005 * 109.47241 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47033 * 60.00839 * 1 2 3 26 26 H 1.08996 * 109.48039 * 300.00191 * 1 2 3 27 27 H 0.97007 * 119.99874 * 180.02562 * 7 6 4 28 28 H 1.00904 * 111.00376 * 321.04493 * 12 2 1 29 29 H 1.09004 * 109.46761 * 291.92381 * 13 12 2 30 30 H 1.09005 * 109.46792 * 51.91554 * 13 12 2 31 31 H 1.08004 * 122.53758 * 0.02628 * 17 16 14 32 32 H 1.07997 * 122.54224 * 180.19944 * 18 17 16 33 33 H 1.07998 * 125.20283 * 179.75740 * 19 18 17 34 34 H 1.08995 * 109.47025 * 65.05397 * 22 21 14 35 35 H 1.09000 * 109.46911 * 185.06145 * 22 21 14 36 36 H 1.09001 * 109.46797 * 305.05313 * 22 21 14 37 37 H 1.08996 * 109.47183 * 63.59411 * 23 21 14 38 38 H 1.09003 * 109.47091 * 183.59015 * 23 21 14 39 39 H 1.08998 * 109.47030 * 303.58901 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7102 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2391 2.4827 7 7 0.9434 0.8304 2.6033 8 14 2.3213 -1.1199 4.0080 9 1 3.6296 -0.5454 4.4124 10 1 1.3430 -0.9489 5.1121 11 1 2.4859 -2.5658 3.7121 12 7 2.0197 -0.6925 -1.1993 13 6 2.0825 0.2225 -2.3469 14 6 2.7813 -0.4736 -3.5165 15 1 3.8012 -0.7300 -3.2299 16 6 2.8112 0.4512 -4.7061 17 6 3.8861 1.1109 -5.1403 18 6 3.6738 1.9018 -6.2564 19 6 2.4242 1.8914 -6.7230 20 16 1.4324 0.8317 -5.7295 21 7 2.0485 -1.6977 -3.8664 22 6 2.4822 -2.8272 -3.0332 23 6 0.5979 -1.4915 -3.7599 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3635 0.5138 0.8899 27 1 0.7093 1.1621 3.4844 28 1 1.4496 -1.4980 -1.4100 29 1 1.0718 0.5039 -2.6428 30 1 2.6418 1.1159 -2.0690 31 1 4.8499 1.0318 -4.6592 32 1 4.4593 2.4861 -6.7123 33 1 2.0749 2.4486 -7.5797 34 1 2.2157 -2.6354 -1.9939 35 1 1.9901 -3.7388 -3.3723 36 1 3.5626 -2.9455 -3.1155 37 1 0.2835 -0.7405 -4.4845 38 1 0.0817 -2.4300 -3.9622 39 1 0.3522 -1.1512 -2.7539 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068481374.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:37 Heat of formation + Delta-G solvation = 41.829872 kcal Electronic energy + Delta-G solvation = -18886.284015 eV Core-core repulsion = 16148.721175 eV Total energy + Delta-G solvation = -2737.562840 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.38042 -38.31716 -36.86507 -34.23976 -32.34502 -30.32031 -28.66858 -27.83173 -27.25923 -24.80973 -24.29745 -22.26035 -21.61075 -20.11940 -18.59813 -17.88758 -17.13107 -16.83682 -16.37768 -16.26768 -15.52000 -15.36064 -14.78648 -14.31936 -13.97405 -13.84534 -13.77402 -13.56413 -13.23276 -13.19078 -12.89829 -12.85831 -12.75507 -12.62338 -12.39430 -12.26582 -12.21226 -12.02120 -11.90993 -11.37627 -11.09652 -10.50580 -9.56724 -9.32022 -9.28431 -8.99750 -8.11484 -6.23169 0.16337 0.80120 1.21202 1.42716 1.43276 1.53909 1.90803 2.42623 3.01983 3.17126 3.37042 4.01768 4.07823 4.15269 4.26248 4.32663 4.44824 4.57763 4.63533 4.70182 4.71078 4.77692 4.80362 4.87717 4.91050 4.96536 5.05059 5.21194 5.28020 5.36142 5.47442 5.64306 5.65124 5.75017 5.99288 6.04440 6.22024 6.55006 6.71183 6.89833 7.46848 8.94166 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.029171 B = 0.004652 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.635037 B = 6016.931344 C = 6203.382425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.215 3.785 3 H -0.002 1.002 4 C -0.513 4.513 5 H 0.056 0.944 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.962 3.038 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.267 1.267 12 N -0.681 5.681 13 C 0.043 3.957 14 C 0.162 3.838 15 H 0.098 0.902 16 C -0.167 4.167 17 C -0.147 4.147 18 C -0.139 4.139 19 C -0.229 4.229 20 S 0.098 5.902 21 N -0.533 5.533 22 C 0.015 3.985 23 C 0.011 3.989 24 H 0.031 0.969 25 H 0.020 0.980 26 H 0.063 0.937 27 H 0.261 0.739 28 H 0.334 0.666 29 H 0.025 0.975 30 H 0.054 0.946 31 H 0.146 0.854 32 H 0.160 0.840 33 H 0.184 0.816 34 H 0.042 0.958 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.959 -1.513 -17.494 17.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.107 3.893 3 H 0.016 0.984 4 C -0.552 4.552 5 H 0.075 0.925 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.787 3.213 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.192 1.192 12 N -0.316 5.316 13 C -0.089 4.089 14 C 0.051 3.949 15 H 0.116 0.884 16 C -0.285 4.285 17 C -0.178 4.178 18 C -0.170 4.170 19 C -0.364 4.364 20 S 0.361 5.639 21 N -0.256 5.256 22 C -0.133 4.133 23 C -0.138 4.138 24 H 0.050 0.950 25 H 0.039 0.961 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.158 0.842 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.164 0.836 32 H 0.178 0.822 33 H 0.201 0.799 34 H 0.060 0.940 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 1.124 -1.885 -17.720 17.855 hybrid contribution 0.468 0.721 1.719 1.922 sum 1.592 -1.165 -16.001 16.122 Atomic orbital electron populations 1.22224 1.00056 0.99092 0.99937 1.18962 0.89970 0.92656 0.87747 0.98399 1.21408 1.30443 1.12503 0.90843 0.92534 1.25730 0.95397 0.95855 1.01952 1.70018 1.38014 1.24304 1.24009 0.85499 0.77866 0.79115 0.78775 1.20415 1.21003 1.19175 1.61083 1.57943 1.09350 1.03191 1.22498 0.98460 0.96376 0.91547 1.20080 0.99051 0.87911 0.87813 0.88444 1.24410 0.97292 1.04646 1.02150 1.20364 0.99568 0.99376 0.98498 1.20355 0.97770 1.01672 0.97154 1.26118 0.97742 1.06214 1.06325 1.84196 1.13421 1.42405 1.23862 1.62306 1.04625 1.04426 1.54270 1.22675 1.01767 0.92988 0.95853 1.22678 0.88600 1.02850 0.99653 0.94964 0.96099 0.91861 0.93011 0.84235 0.95688 0.92721 0.83612 0.82230 0.79873 0.94025 0.90087 0.91010 0.91443 0.89417 0.95849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.45 8.94 71.98 0.64 -6.80 16 2 C 0.22 10.92 2.57 44.17 0.11 11.04 16 3 H 0.00 -0.11 7.67 -2.38 -0.02 -0.13 16 4 C -0.51 -28.37 8.84 25.60 0.23 -28.14 16 5 H 0.06 3.12 7.81 -2.91 -0.02 3.10 16 6 C 0.01 0.49 5.30 84.65 0.45 0.94 16 7 N -0.92 -53.36 11.32 21.45 0.24 -53.12 16 8 Si 0.96 43.82 29.54 68.60 2.03 45.84 16 9 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 12 N -0.68 -28.29 5.18 -495.46 -2.57 -30.86 16 13 C 0.04 1.55 4.31 86.30 0.37 1.92 16 14 C 0.16 4.90 2.59 44.17 0.11 5.01 16 15 H 0.10 3.01 7.68 -2.39 -0.02 2.99 16 16 C -0.17 -4.59 5.41 24.59 0.13 -4.46 16 17 C -0.15 -3.62 10.03 21.22 0.21 -3.41 16 18 C -0.14 -2.91 10.18 21.22 0.22 -2.69 16 19 C -0.23 -4.69 11.23 66.72 0.75 -3.94 16 20 S 0.10 2.40 20.36 -56.49 -1.15 1.25 16 21 N -0.53 -14.85 4.82 -927.73 -4.47 -19.32 16 22 C 0.02 0.40 9.18 127.69 1.17 1.58 16 23 C 0.01 0.29 8.24 127.69 1.05 1.35 16 24 H 0.03 1.47 8.13 -2.38 -0.02 1.45 16 25 H 0.02 0.90 7.62 -2.38 -0.02 0.88 16 26 H 0.06 3.43 6.07 -2.39 -0.01 3.41 16 27 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 28 H 0.33 13.07 3.85 -89.69 -0.35 12.72 16 29 H 0.03 0.92 5.98 -2.38 -0.01 0.91 16 30 H 0.05 2.16 7.85 -2.38 -0.02 2.15 16 31 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 32 H 0.16 2.45 8.06 -2.91 -0.02 2.42 16 33 H 0.18 2.68 8.06 -2.91 -0.02 2.66 16 34 H 0.04 1.30 4.73 -2.39 -0.01 1.29 16 35 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 1.82 7.93 -2.39 -0.02 1.80 16 37 H 0.07 1.77 5.16 -5.73 -0.03 1.74 16 38 H 0.09 2.02 8.11 -2.39 -0.02 2.00 16 39 H 0.02 0.73 4.63 -2.39 -0.01 0.72 16 Total: -1.00 -60.19 313.21 0.21 -59.97 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 0.68 Total: 23.86 kcal Atomic # 6 Polarization: -33.08 SS G_CDS: 5.45 Total: -27.62 kcal Atomic # 7 Polarization: -96.50 SS G_CDS: -6.80 Total: -103.30 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -1.15 Total: 1.25 kcal Total: -60.19 0.21 -59.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068481374.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.804 kcal (2) G-P(sol) polarization free energy of solvation -60.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds