Wall clock time and date at job start Mon Mar 30 2020 06:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46936 * 2 1 4 4 C 1.50696 * 109.47162 * 239.99580 * 2 1 3 5 5 H 1.07999 * 120.00492 * 240.00025 * 4 2 1 6 6 C 1.37883 * 119.99828 * 60.00409 * 4 2 1 7 7 N 1.31513 * 120.00230 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00037 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47257 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47210 * 119.99979 * 8 6 4 11 11 H 1.48503 * 109.47032 * 240.00109 * 8 6 4 12 12 N 1.46901 * 109.46747 * 119.99861 * 2 1 3 13 13 C 1.46900 * 111.00216 * 274.99753 * 12 2 1 14 14 C 1.52994 * 109.47253 * 180.02562 * 13 12 2 15 15 H 1.08997 * 109.47564 * 299.14122 * 14 13 12 16 16 C 1.50703 * 109.47400 * 179.13866 * 14 13 12 17 17 C 1.33384 * 125.20450 * 97.98140 * 16 14 13 18 18 C 1.38418 * 114.92105 * 180.25594 * 17 16 14 19 19 C 1.33388 * 114.92141 * 359.49014 * 18 17 16 20 20 S 1.75882 * 125.20099 * 277.96201 * 16 14 13 21 21 N 1.46901 * 109.47161 * 59.14017 * 14 13 12 22 22 C 1.46901 * 110.99786 * 280.42823 * 21 14 13 23 23 C 1.46899 * 111.00032 * 44.37605 * 21 14 13 24 24 H 1.09004 * 109.46904 * 59.99922 * 1 2 3 25 25 H 1.09005 * 109.47213 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47640 * 300.00320 * 1 2 3 27 27 H 0.96993 * 119.99991 * 179.97438 * 7 6 4 28 28 H 1.00900 * 111.00231 * 38.95486 * 12 2 1 29 29 H 1.09007 * 109.46634 * 60.00317 * 13 12 2 30 30 H 1.09004 * 109.46791 * 300.00533 * 13 12 2 31 31 H 1.08004 * 122.53931 * 359.97438 * 17 16 14 32 32 H 1.07999 * 122.54106 * 179.72978 * 18 17 16 33 33 H 1.08005 * 125.20602 * 180.21728 * 19 18 17 34 34 H 1.09000 * 109.47307 * 68.84142 * 22 21 14 35 35 H 1.09007 * 109.47490 * 188.84245 * 22 21 14 36 36 H 1.09000 * 109.47282 * 308.84251 * 22 21 14 37 37 H 1.09005 * 109.46804 * 54.75228 * 23 21 14 38 38 H 1.09005 * 109.47028 * 174.74158 * 23 21 14 39 39 H 1.08994 * 109.47480 * 294.74804 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6035 8 14 2.3225 -1.1197 -4.0079 9 1 3.1484 -2.2858 -3.6037 10 1 1.1679 -1.5867 -4.8165 11 1 3.1474 -0.1859 -4.8160 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5961 -0.5328 3.5742 15 1 1.9119 -1.3473 3.8123 16 6 2.6806 0.4109 4.7461 17 6 1.7600 0.5324 5.7036 18 6 2.0523 1.4709 6.6781 19 6 3.2153 2.1041 6.5178 20 16 4.0086 1.5204 5.0606 21 7 3.9291 -1.0806 3.2895 22 6 3.8332 -2.3140 2.4974 23 6 4.7738 -0.0861 2.6148 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.7089 1.1611 -3.4844 28 1 1.4495 -1.4979 1.4101 29 1 1.0869 0.6163 2.5525 30 1 2.7588 1.0462 2.1182 31 1 0.8529 -0.0538 5.7150 32 1 1.3907 1.6724 7.5076 33 1 3.6077 2.8624 7.1792 34 1 3.4790 -2.0752 1.4946 35 1 4.8154 -2.7824 2.4339 36 1 3.1340 -2.9997 2.9760 37 1 4.8091 0.8255 3.2116 38 1 5.7821 -0.4840 2.4996 39 1 4.3573 0.1383 1.6329 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068481376.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:40 Heat of formation + Delta-G solvation = 50.415017 kcal Electronic energy + Delta-G solvation = -18884.911743 eV Core-core repulsion = 16147.721182 eV Total energy + Delta-G solvation = -2737.190560 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.84333 -37.13511 -35.24755 -32.40639 -30.92712 -28.67782 -27.29052 -26.44156 -25.18028 -23.47489 -23.10591 -20.34331 -20.26984 -19.10151 -16.97047 -16.34084 -15.67644 -15.32020 -14.87677 -14.61839 -14.15281 -13.72097 -13.48919 -12.85001 -12.75420 -12.63545 -12.25082 -12.07194 -11.84425 -11.65451 -11.58125 -11.31181 -11.16368 -10.97300 -10.86708 -10.72203 -10.47753 -10.20805 -10.16002 -9.96786 -9.09698 -8.54074 -8.41033 -8.29671 -8.02828 -7.14531 -6.03221 -4.07071 1.17043 1.81090 2.21464 2.87822 3.28324 3.36542 3.40929 4.35575 4.38956 4.77726 5.14693 5.28676 5.29674 5.43825 5.51067 5.57338 5.65317 5.75420 5.92523 6.02254 6.05758 6.20278 6.27576 6.29035 6.44206 6.45485 6.60752 6.64089 6.75615 6.79137 7.05752 7.24848 7.35862 7.39463 7.68042 7.80826 8.19351 8.40718 8.51614 8.99937 9.58671 11.03800 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.029744 B = 0.004778 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.144301 B = 5858.310403 C = 6176.495738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.211 3.789 3 H 0.032 0.968 4 C -0.495 4.495 5 H 0.062 0.938 6 C 0.056 3.944 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.676 5.676 13 C 0.033 3.967 14 C 0.149 3.851 15 H 0.091 0.909 16 C -0.141 4.141 17 C -0.151 4.151 18 C -0.132 4.132 19 C -0.247 4.247 20 S 0.127 5.873 21 N -0.529 5.529 22 C 0.007 3.993 23 C 0.018 3.982 24 H 0.089 0.911 25 H 0.027 0.973 26 H 0.004 0.996 27 H 0.259 0.741 28 H 0.325 0.675 29 H 0.026 0.974 30 H 0.072 0.928 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.155 0.845 34 H 0.088 0.912 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.545 -0.170 15.135 15.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.104 3.896 3 H 0.050 0.950 4 C -0.533 4.533 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.212 1.212 12 N -0.306 5.306 13 C -0.099 4.099 14 C 0.037 3.963 15 H 0.109 0.891 16 C -0.260 4.260 17 C -0.182 4.182 18 C -0.163 4.163 19 C -0.382 4.382 20 S 0.391 5.609 21 N -0.252 5.252 22 C -0.141 4.141 23 C -0.131 4.131 24 H 0.107 0.893 25 H 0.047 0.953 26 H 0.023 0.977 27 H 0.069 0.931 28 H 0.142 0.858 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.152 0.848 32 H 0.149 0.851 33 H 0.173 0.827 34 H 0.106 0.894 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.728 0.264 14.561 15.649 hybrid contribution -2.503 -0.275 -0.534 2.574 sum 3.224 -0.010 14.027 14.392 Atomic orbital electron populations 1.22415 1.00639 0.99178 1.00522 1.19188 0.89677 0.94379 0.86375 0.95020 1.21146 1.30284 1.12400 0.89502 0.91929 1.24952 0.95288 0.95167 0.99081 1.69890 1.37229 1.23187 1.23289 0.86465 0.78514 0.79647 0.82901 1.19729 1.21221 1.21160 1.61011 1.57228 1.08934 1.03440 1.22615 0.99391 0.96812 0.91033 1.20247 0.91786 0.94199 0.90038 0.89104 1.24498 0.98122 1.02349 1.01024 1.20007 1.01002 1.01910 0.95243 1.20040 0.97404 0.98173 1.00706 1.25936 1.00831 1.07238 1.04172 1.84374 1.22808 1.33955 1.19732 1.62414 1.10538 1.05882 1.46372 1.22712 1.00918 0.90352 1.00070 1.22559 0.97458 0.94382 0.98679 0.89266 0.95341 0.97662 0.93093 0.85820 0.95600 0.90977 0.84752 0.85071 0.82693 0.89358 0.92803 0.92916 0.92887 0.91779 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.95 8.94 37.16 0.33 -3.62 16 2 C 0.21 5.08 2.57 -68.87 -0.18 4.90 16 3 H 0.03 0.86 7.80 -51.93 -0.40 0.45 16 4 C -0.49 -13.13 8.84 -34.44 -0.30 -13.44 16 5 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 6 C 0.06 1.51 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.26 11.32 55.43 0.63 -24.63 16 8 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 9 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 N -0.68 -13.17 2.87 -107.95 -0.31 -13.48 16 13 C 0.03 0.58 4.17 -3.83 -0.02 0.56 16 14 C 0.15 2.22 2.52 -68.87 -0.17 2.05 16 15 H 0.09 1.31 7.74 -51.93 -0.40 0.91 16 16 C -0.14 -2.01 5.46 -36.00 -0.20 -2.21 16 17 C -0.15 -1.97 10.04 -41.21 -0.41 -2.39 16 18 C -0.13 -1.57 10.18 -41.21 -0.42 -1.99 16 19 C -0.25 -2.91 11.23 29.04 0.33 -2.58 16 20 S 0.13 1.68 19.74 -107.50 -2.12 -0.44 16 21 N -0.53 -8.00 4.84 -244.58 -1.18 -9.18 16 22 C 0.01 0.11 9.01 60.07 0.54 0.65 16 23 C 0.02 0.28 8.21 60.06 0.49 0.77 16 24 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 25 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 26 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 27 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 28 H 0.33 6.06 8.19 -39.29 -0.32 5.74 16 29 H 0.03 0.47 7.44 -51.93 -0.39 0.08 16 30 H 0.07 1.35 6.42 -51.93 -0.33 1.01 16 31 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 32 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.16 1.45 8.06 -52.48 -0.42 1.03 16 34 H 0.09 1.52 5.55 -51.93 -0.29 1.23 16 35 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 36 H 0.05 0.72 7.86 -51.93 -0.41 0.31 16 37 H 0.05 0.77 4.39 -31.48 -0.14 0.63 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 1.12 6.22 -51.93 -0.32 0.79 16 LS Contribution 315.93 15.07 4.76 4.76 Total: -1.00 -27.37 315.93 -9.14 -36.51 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -5.79 Total: 6.26 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -0.10 Total: -15.88 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: -0.87 Total: -47.29 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.12 Total: -0.44 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.37 -9.14 -36.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068481376.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.927 kcal (2) G-P(sol) polarization free energy of solvation -27.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds