Wall clock time and date at job start Mon Mar 30 2020 06:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46936 * 2 1 4 4 C 1.50696 * 109.47162 * 239.99580 * 2 1 3 5 5 H 1.07999 * 120.00492 * 240.00025 * 4 2 1 6 6 C 1.37883 * 119.99828 * 60.00409 * 4 2 1 7 7 N 1.31513 * 120.00230 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00037 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47257 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47210 * 119.99979 * 8 6 4 11 11 H 1.48503 * 109.47032 * 240.00109 * 8 6 4 12 12 N 1.46901 * 109.46747 * 119.99861 * 2 1 3 13 13 C 1.46900 * 111.00216 * 274.99753 * 12 2 1 14 14 C 1.52994 * 109.47253 * 180.02562 * 13 12 2 15 15 H 1.08997 * 109.47564 * 299.14122 * 14 13 12 16 16 C 1.50703 * 109.47400 * 179.13866 * 14 13 12 17 17 C 1.33384 * 125.20450 * 97.98140 * 16 14 13 18 18 C 1.38418 * 114.92105 * 180.25594 * 17 16 14 19 19 C 1.33388 * 114.92141 * 359.49014 * 18 17 16 20 20 S 1.75882 * 125.20099 * 277.96201 * 16 14 13 21 21 N 1.46901 * 109.47161 * 59.14017 * 14 13 12 22 22 C 1.46901 * 110.99786 * 280.42823 * 21 14 13 23 23 C 1.46899 * 111.00032 * 44.37605 * 21 14 13 24 24 H 1.09004 * 109.46904 * 59.99922 * 1 2 3 25 25 H 1.09005 * 109.47213 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47640 * 300.00320 * 1 2 3 27 27 H 0.96993 * 119.99991 * 179.97438 * 7 6 4 28 28 H 1.00900 * 111.00231 * 38.95486 * 12 2 1 29 29 H 1.09007 * 109.46634 * 60.00317 * 13 12 2 30 30 H 1.09004 * 109.46791 * 300.00533 * 13 12 2 31 31 H 1.08004 * 122.53931 * 359.97438 * 17 16 14 32 32 H 1.07999 * 122.54106 * 179.72978 * 18 17 16 33 33 H 1.08005 * 125.20602 * 180.21728 * 19 18 17 34 34 H 1.09000 * 109.47307 * 68.84142 * 22 21 14 35 35 H 1.09007 * 109.47490 * 188.84245 * 22 21 14 36 36 H 1.09000 * 109.47282 * 308.84251 * 22 21 14 37 37 H 1.09005 * 109.46804 * 54.75228 * 23 21 14 38 38 H 1.09005 * 109.47028 * 174.74158 * 23 21 14 39 39 H 1.08994 * 109.47480 * 294.74804 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6035 8 14 2.3225 -1.1197 -4.0079 9 1 3.1484 -2.2858 -3.6037 10 1 1.1679 -1.5867 -4.8165 11 1 3.1474 -0.1859 -4.8160 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5961 -0.5328 3.5742 15 1 1.9119 -1.3473 3.8123 16 6 2.6806 0.4109 4.7461 17 6 1.7600 0.5324 5.7036 18 6 2.0523 1.4709 6.6781 19 6 3.2153 2.1041 6.5178 20 16 4.0086 1.5204 5.0606 21 7 3.9291 -1.0806 3.2895 22 6 3.8332 -2.3140 2.4974 23 6 4.7738 -0.0861 2.6148 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.7089 1.1611 -3.4844 28 1 1.4495 -1.4979 1.4101 29 1 1.0869 0.6163 2.5525 30 1 2.7588 1.0462 2.1182 31 1 0.8529 -0.0538 5.7150 32 1 1.3907 1.6724 7.5076 33 1 3.6077 2.8624 7.1792 34 1 3.4790 -2.0752 1.4946 35 1 4.8154 -2.7824 2.4339 36 1 3.1340 -2.9997 2.9760 37 1 4.8091 0.8255 3.2116 38 1 5.7821 -0.4840 2.4996 39 1 4.3573 0.1383 1.6329 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068481376.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:40 Heat of formation + Delta-G solvation = 34.019245 kcal Electronic energy + Delta-G solvation = -18885.622717 eV Core-core repulsion = 16147.721182 eV Total energy + Delta-G solvation = -2737.901534 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.10014 -38.21754 -36.94140 -34.28731 -32.18792 -30.29197 -28.51417 -27.72677 -27.21054 -24.82775 -24.21479 -22.17047 -21.55646 -20.09240 -18.48269 -17.91618 -16.91227 -16.69754 -16.50925 -16.09926 -15.42933 -15.10803 -15.03211 -14.52246 -13.94055 -13.74121 -13.62471 -13.55261 -13.19775 -13.01531 -12.91583 -12.88374 -12.69573 -12.54065 -12.39533 -12.26173 -12.12145 -11.98878 -11.88037 -11.20271 -11.07248 -10.49899 -9.61843 -9.39284 -9.28848 -8.66826 -8.10268 -6.21036 0.17855 0.81475 1.23770 1.41451 1.44029 1.55403 1.91957 2.43356 3.16158 3.19103 3.43062 3.95538 4.12286 4.28172 4.33564 4.38158 4.60577 4.62767 4.72252 4.73241 4.76810 4.80971 4.85422 4.94532 5.06091 5.09025 5.14883 5.28608 5.36941 5.46990 5.52793 5.66071 5.68887 5.79007 6.10883 6.17583 6.24769 6.57228 6.75520 6.93670 7.49016 8.95687 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.029744 B = 0.004778 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.144301 B = 5858.310403 C = 6176.495738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.218 3.782 3 H -0.005 1.005 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.008 3.992 7 N -0.924 5.924 8 Si 0.959 3.041 9 H -0.266 1.266 10 H -0.282 1.282 11 H -0.285 1.285 12 N -0.667 5.667 13 C 0.043 3.957 14 C 0.160 3.840 15 H 0.100 0.900 16 C -0.169 4.169 17 C -0.146 4.146 18 C -0.141 4.141 19 C -0.237 4.237 20 S 0.104 5.896 21 N -0.526 5.526 22 C 0.011 3.989 23 C 0.023 3.977 24 H 0.060 0.940 25 H 0.035 0.965 26 H 0.021 0.979 27 H 0.260 0.740 28 H 0.333 0.667 29 H 0.020 0.980 30 H 0.054 0.946 31 H 0.149 0.851 32 H 0.159 0.841 33 H 0.181 0.819 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.650 -0.881 16.721 17.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.110 3.890 3 H 0.013 0.987 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.190 4.190 7 N -0.565 5.565 8 Si 0.785 3.215 9 H -0.191 1.191 10 H -0.208 1.208 11 H -0.211 1.211 12 N -0.297 5.297 13 C -0.089 4.089 14 C 0.048 3.952 15 H 0.118 0.882 16 C -0.288 4.288 17 C -0.177 4.177 18 C -0.171 4.171 19 C -0.372 4.372 20 S 0.367 5.633 21 N -0.249 5.249 22 C -0.137 4.137 23 C -0.126 4.126 24 H 0.078 0.922 25 H 0.054 0.946 26 H 0.040 0.960 27 H 0.069 0.931 28 H 0.151 0.849 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.166 0.834 32 H 0.176 0.824 33 H 0.198 0.802 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 5.839 -0.462 16.163 17.191 hybrid contribution -2.537 -0.002 -0.920 2.699 sum 3.301 -0.464 15.243 15.603 Atomic orbital electron populations 1.22230 1.00124 0.99316 0.99846 1.18910 0.89892 0.92482 0.87740 0.98703 1.21427 1.30108 1.12291 0.90696 0.92358 1.25706 0.95514 0.95836 1.01922 1.70021 1.38225 1.24416 1.23832 0.85489 0.77995 0.78627 0.79375 1.19059 1.20808 1.21109 1.60887 1.56811 1.09049 1.02959 1.22553 0.98705 0.96311 0.91329 1.20113 0.91657 0.94271 0.89125 0.88181 1.24432 0.99322 1.03430 1.01585 1.20326 1.00916 1.01694 0.94796 1.20345 0.97862 0.97692 1.01197 1.26255 1.00452 1.07238 1.03257 1.84384 1.23279 1.34357 1.21235 1.62462 1.10570 1.05834 1.45994 1.22663 1.01777 0.90543 0.98714 1.22497 0.97826 0.95065 0.97208 0.92153 0.94634 0.96031 0.93135 0.84944 0.96196 0.92759 0.83380 0.82401 0.80162 0.91838 0.91868 0.91469 0.92149 0.90715 0.94952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.38 8.94 71.98 0.64 -6.74 16 2 C 0.22 10.73 2.57 44.17 0.11 10.85 16 3 H 0.00 -0.28 7.80 -2.39 -0.02 -0.30 16 4 C -0.51 -27.27 8.84 25.60 0.23 -27.04 16 5 H 0.06 3.13 7.81 -2.91 -0.02 3.11 16 6 C 0.01 0.45 5.30 84.66 0.45 0.89 16 7 N -0.92 -53.06 11.32 21.45 0.24 -52.82 16 8 Si 0.96 43.49 29.54 68.60 2.03 45.52 16 9 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 12 N -0.67 -26.23 2.87 -495.46 -1.42 -27.65 16 13 C 0.04 1.49 4.17 86.30 0.36 1.85 16 14 C 0.16 4.63 2.52 44.17 0.11 4.74 16 15 H 0.10 2.71 7.74 -2.39 -0.02 2.69 16 16 C -0.17 -4.59 5.46 24.59 0.13 -4.46 16 17 C -0.15 -3.48 10.04 21.21 0.21 -3.26 16 18 C -0.14 -2.92 10.18 21.21 0.22 -2.71 16 19 C -0.24 -4.96 11.23 66.72 0.75 -4.21 16 20 S 0.10 2.62 19.74 -56.49 -1.12 1.50 16 21 N -0.53 -15.44 4.84 -927.72 -4.49 -19.93 16 22 C 0.01 0.32 9.01 127.69 1.15 1.47 16 23 C 0.02 0.71 8.21 127.69 1.05 1.76 16 24 H 0.06 3.23 6.07 -2.38 -0.01 3.22 16 25 H 0.03 1.58 8.13 -2.38 -0.02 1.56 16 26 H 0.02 0.90 7.45 -2.39 -0.02 0.89 16 27 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 28 H 0.33 12.26 8.19 -89.69 -0.73 11.52 16 29 H 0.02 0.72 7.44 -2.38 -0.02 0.70 16 30 H 0.05 2.10 6.42 -2.39 -0.02 2.08 16 31 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 32 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 33 H 0.18 2.77 8.06 -2.91 -0.02 2.74 16 34 H 0.06 2.17 5.55 -2.39 -0.01 2.15 16 35 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.07 1.71 7.86 -2.39 -0.02 1.69 16 37 H 0.06 1.76 4.39 -15.38 -0.07 1.70 16 38 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 39 H 0.03 1.18 6.22 -2.39 -0.01 1.17 16 Total: -1.00 -58.67 315.93 0.90 -57.77 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.25 Total: 22.48 kcal Atomic # 6 Polarization: -32.28 SS G_CDS: 5.41 Total: -26.87 kcal Atomic # 7 Polarization: -94.73 SS G_CDS: -5.67 Total: -100.40 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -1.12 Total: 1.50 kcal Total: -58.67 0.90 -57.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068481376.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.786 kcal (2) G-P(sol) polarization free energy of solvation -58.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds