Wall clock time and date at job start Mon Mar 30 2020 06:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46985 * 2 1 4 4 C 1.50700 * 109.47238 * 239.99819 * 2 1 3 5 5 H 1.08005 * 119.99347 * 239.99928 * 4 2 1 6 6 C 1.37872 * 120.00060 * 59.99939 * 4 2 1 7 7 N 1.31513 * 120.00174 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99918 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47103 * 89.99681 * 8 6 4 10 10 H 1.48496 * 109.47180 * 209.99842 * 8 6 4 11 11 H 1.48496 * 109.46931 * 329.99953 * 8 6 4 12 12 N 1.46901 * 109.47024 * 119.99494 * 2 1 3 13 13 C 1.46909 * 110.99990 * 274.99893 * 12 2 1 14 14 C 1.53000 * 109.46986 * 174.81471 * 13 12 2 15 15 H 1.08997 * 109.46934 * 56.22124 * 14 13 12 16 16 C 1.50699 * 109.47245 * 296.21919 * 14 13 12 17 17 C 1.38427 * 122.53721 * 99.73676 * 16 14 13 18 18 C 1.33392 * 114.92377 * 179.75972 * 17 16 14 19 19 S 1.75893 * 109.58819 * 0.47948 * 18 17 16 20 20 C 1.33390 * 122.54323 * 280.02454 * 16 14 13 21 21 N 1.46900 * 109.47043 * 176.22079 * 14 13 12 22 22 C 1.46893 * 110.99889 * 181.63032 * 21 14 13 23 23 C 1.46902 * 110.99825 * 305.58433 * 21 14 13 24 24 H 1.08998 * 109.46921 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47434 * 300.00438 * 1 2 3 26 26 H 1.09003 * 109.46922 * 60.00476 * 1 2 3 27 27 H 0.97001 * 120.00145 * 180.02562 * 7 6 4 28 28 H 1.00899 * 110.99858 * 151.04903 * 12 2 1 29 29 H 1.08994 * 109.47066 * 294.81842 * 13 12 2 30 30 H 1.09000 * 109.46701 * 54.81679 * 13 12 2 31 31 H 1.08011 * 122.54022 * 359.97438 * 17 16 14 32 32 H 1.07997 * 125.20838 * 180.21076 * 18 17 16 33 33 H 1.08001 * 125.20075 * 359.97438 * 20 16 14 34 34 H 1.09003 * 109.47365 * 63.95341 * 22 21 14 35 35 H 1.09001 * 109.47345 * 183.95025 * 22 21 14 36 36 H 1.09004 * 109.47258 * 303.95197 * 22 21 14 37 37 H 1.08998 * 109.47092 * 66.76023 * 23 21 14 38 38 H 1.08999 * 109.46747 * 186.75575 * 23 21 14 39 39 H 1.08995 * 109.47031 * 306.75451 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.3429 -2.1619 -4.4116 10 1 2.4867 -0.1417 -5.1122 11 1 3.6294 -1.7585 -3.7120 12 7 2.0197 -0.6924 1.1995 13 6 2.0825 0.2229 2.3469 14 6 2.4712 -0.5598 3.6028 15 1 3.4141 -1.0785 3.4303 16 6 1.3952 -1.5659 3.9209 17 6 1.5035 -2.9038 3.5827 18 6 0.4648 -3.6601 3.9412 19 16 -0.7429 -2.6623 4.7409 20 6 0.2639 -1.2336 4.5446 21 7 2.6223 0.3687 4.7312 22 6 3.0337 -0.3441 5.9479 23 6 3.5690 1.4436 4.4051 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 0.7082 1.1606 -3.4845 28 1 2.9173 -1.1204 1.0288 29 1 2.8271 0.9953 2.1552 30 1 1.1074 0.6869 2.4952 31 1 2.3654 -3.3057 3.0705 32 1 0.3768 -4.7217 3.7635 33 1 0.0059 -0.2394 4.8785 34 1 4.0206 -0.7815 5.7967 35 1 3.0703 0.3548 6.7836 36 1 2.3156 -1.1345 6.1664 37 1 3.1484 2.0726 3.6206 38 1 3.7541 2.0467 5.2941 39 1 4.5068 1.0092 4.0591 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068482138.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:13 Heat of formation + Delta-G solvation = 45.390306 kcal Electronic energy + Delta-G solvation = -18846.395932 eV Core-core repulsion = 16108.987483 eV Total energy + Delta-G solvation = -2737.408448 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.16475 -36.24967 -35.50398 -32.57124 -30.23121 -28.98028 -27.38791 -26.70250 -25.18420 -23.57846 -23.12199 -20.33289 -19.70938 -18.33407 -17.47375 -16.44561 -15.77335 -15.06690 -14.74696 -14.65089 -14.12162 -13.96662 -13.23878 -13.03591 -12.57447 -12.52448 -12.41558 -12.29978 -11.91216 -11.73223 -11.51090 -11.42582 -11.18970 -10.99270 -10.70190 -10.66213 -10.44454 -10.15459 -10.07683 -9.87965 -8.80225 -8.46803 -8.38095 -8.28673 -8.00313 -7.19521 -6.01038 -4.07328 1.40275 2.02165 2.32618 3.11926 3.30201 3.36577 3.39077 3.98593 4.41675 5.02358 5.20096 5.29910 5.30705 5.42400 5.43761 5.56024 5.59392 5.68769 5.76144 5.79841 5.92317 5.98605 6.00587 6.24562 6.39446 6.46707 6.68754 6.81849 6.94250 7.10509 7.20138 7.20474 7.30519 7.55307 7.79700 7.93193 8.30668 8.41723 8.69881 9.03542 9.58495 11.05277 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.019532 B = 0.005430 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.168661 B = 5154.835860 C = 5929.020349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.216 3.784 3 H -0.002 1.002 4 C -0.516 4.516 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.681 5.681 13 C 0.071 3.929 14 C 0.146 3.854 15 H 0.045 0.955 16 C -0.067 4.067 17 C -0.103 4.103 18 C -0.219 4.219 19 S 0.056 5.944 20 C -0.185 4.185 21 N -0.540 5.540 22 C 0.026 3.974 23 C 0.022 3.978 24 H 0.030 0.970 25 H 0.003 0.997 26 H 0.079 0.921 27 H 0.260 0.740 28 H 0.326 0.674 29 H 0.023 0.977 30 H 0.072 0.928 31 H 0.135 0.865 32 H 0.157 0.843 33 H 0.163 0.837 34 H 0.021 0.979 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.127 -3.495 16.094 16.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.108 3.892 3 H 0.016 0.984 4 C -0.555 4.555 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.312 5.312 13 C -0.059 4.059 14 C 0.035 3.965 15 H 0.063 0.937 16 C -0.080 4.080 17 C -0.134 4.134 18 C -0.354 4.354 19 S 0.319 5.681 20 C -0.320 4.320 21 N -0.264 5.264 22 C -0.123 4.123 23 C -0.126 4.126 24 H 0.049 0.951 25 H 0.022 0.978 26 H 0.097 0.903 27 H 0.070 0.930 28 H 0.143 0.857 29 H 0.041 0.959 30 H 0.091 0.909 31 H 0.153 0.847 32 H 0.175 0.825 33 H 0.181 0.819 34 H 0.040 0.960 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -0.472 -3.689 16.846 17.252 hybrid contribution 3.152 -0.003 -2.018 3.743 sum 2.680 -3.692 14.828 15.514 Atomic orbital electron populations 1.21679 0.97846 0.99259 0.99176 1.19047 0.92601 0.92117 0.85402 0.98403 1.21251 1.31378 1.12399 0.90478 0.92319 1.24912 0.95099 0.94984 0.99002 1.69901 1.36657 1.22907 1.23394 0.86540 0.79170 0.79346 0.82570 1.20635 1.21309 1.20007 1.60602 1.31669 1.33166 1.05780 1.21950 1.00599 0.93534 0.89834 1.20339 0.94872 0.90770 0.90473 0.93732 1.18492 0.96211 0.93725 0.99524 1.19966 0.99917 0.92748 1.00767 1.25356 0.98154 1.03143 1.08725 1.84043 1.23626 1.00843 1.59606 1.25278 0.97226 1.01496 1.08047 1.61928 1.48062 1.12483 1.03937 1.22376 0.98803 0.98722 0.92382 1.22433 0.93836 0.94634 1.01680 0.95077 0.97772 0.90284 0.92965 0.85720 0.95920 0.90940 0.84721 0.82515 0.81947 0.96019 0.91733 0.91087 0.90669 0.91714 0.95643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.10 9.19 37.16 0.34 -2.75 16 2 C 0.22 5.49 2.60 -68.86 -0.18 5.31 16 3 H 0.00 -0.05 7.86 -51.93 -0.41 -0.45 16 4 C -0.52 -14.17 8.59 -34.44 -0.30 -14.47 16 5 H 0.06 1.59 7.62 -52.48 -0.40 1.19 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.61 11.32 55.43 0.63 -24.99 16 8 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.68 -14.36 5.96 -107.94 -0.64 -15.00 16 13 C 0.07 1.29 4.56 -3.82 -0.02 1.28 16 14 C 0.15 2.20 2.02 -68.87 -0.14 2.06 16 15 H 0.04 0.68 8.09 -51.93 -0.42 0.26 16 16 C -0.07 -1.02 3.35 -106.25 -0.36 -1.37 16 17 C -0.10 -1.53 9.95 -41.21 -0.41 -1.94 16 18 C -0.22 -2.99 11.23 29.04 0.33 -2.66 16 19 S 0.06 0.75 23.34 -107.50 -2.51 -1.76 16 20 C -0.18 -2.71 9.79 29.04 0.28 -2.42 16 21 N -0.54 -7.11 4.46 -244.59 -1.09 -8.20 16 22 C 0.03 0.29 9.28 60.06 0.56 0.84 16 23 C 0.02 0.27 8.89 60.07 0.53 0.80 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.00 0.08 7.39 -51.93 -0.38 -0.31 16 26 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.33 6.72 8.28 -39.29 -0.33 6.40 16 29 H 0.02 0.41 6.26 -51.93 -0.33 0.09 16 30 H 0.07 1.43 7.33 -51.93 -0.38 1.05 16 31 H 0.14 1.90 8.06 -52.48 -0.42 1.48 16 32 H 0.16 1.79 8.06 -52.49 -0.42 1.37 16 33 H 0.16 2.31 8.03 -52.49 -0.42 1.89 16 34 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.06 0.63 8.12 -51.93 -0.42 0.20 16 36 H 0.07 0.83 6.53 -51.93 -0.34 0.49 16 37 H 0.07 0.97 6.55 -51.93 -0.34 0.63 16 38 H 0.06 0.65 8.05 -51.93 -0.42 0.23 16 39 H 0.02 0.30 8.11 -51.93 -0.42 -0.12 16 LS Contribution 325.67 15.07 4.91 4.91 Total: -1.00 -28.55 325.67 -9.32 -37.88 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.15 Total: 4.53 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 0.55 Total: -13.70 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: -1.11 Total: -48.19 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -2.51 Total: -1.76 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.55 -9.32 -37.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068482138.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.265 kcal (2) G-P(sol) polarization free energy of solvation -28.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds