Wall clock time and date at job start Mon Mar 30 2020 06:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46985 * 2 1 4 4 C 1.50700 * 109.47238 * 239.99819 * 2 1 3 5 5 H 1.08005 * 119.99347 * 239.99928 * 4 2 1 6 6 C 1.37872 * 120.00060 * 59.99939 * 4 2 1 7 7 N 1.31513 * 120.00174 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99918 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47103 * 89.99681 * 8 6 4 10 10 H 1.48496 * 109.47180 * 209.99842 * 8 6 4 11 11 H 1.48496 * 109.46931 * 329.99953 * 8 6 4 12 12 N 1.46901 * 109.47024 * 119.99494 * 2 1 3 13 13 C 1.46909 * 110.99990 * 274.99893 * 12 2 1 14 14 C 1.53000 * 109.46986 * 174.81471 * 13 12 2 15 15 H 1.08997 * 109.46934 * 56.22124 * 14 13 12 16 16 C 1.50699 * 109.47245 * 296.21919 * 14 13 12 17 17 C 1.38427 * 122.53721 * 99.73676 * 16 14 13 18 18 C 1.33392 * 114.92377 * 179.75972 * 17 16 14 19 19 S 1.75893 * 109.58819 * 0.47948 * 18 17 16 20 20 C 1.33390 * 122.54323 * 280.02454 * 16 14 13 21 21 N 1.46900 * 109.47043 * 176.22079 * 14 13 12 22 22 C 1.46893 * 110.99889 * 181.63032 * 21 14 13 23 23 C 1.46902 * 110.99825 * 305.58433 * 21 14 13 24 24 H 1.08998 * 109.46921 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47434 * 300.00438 * 1 2 3 26 26 H 1.09003 * 109.46922 * 60.00476 * 1 2 3 27 27 H 0.97001 * 120.00145 * 180.02562 * 7 6 4 28 28 H 1.00899 * 110.99858 * 151.04903 * 12 2 1 29 29 H 1.08994 * 109.47066 * 294.81842 * 13 12 2 30 30 H 1.09000 * 109.46701 * 54.81679 * 13 12 2 31 31 H 1.08011 * 122.54022 * 359.97438 * 17 16 14 32 32 H 1.07997 * 125.20838 * 180.21076 * 18 17 16 33 33 H 1.08001 * 125.20075 * 359.97438 * 20 16 14 34 34 H 1.09003 * 109.47365 * 63.95341 * 22 21 14 35 35 H 1.09001 * 109.47345 * 183.95025 * 22 21 14 36 36 H 1.09004 * 109.47258 * 303.95197 * 22 21 14 37 37 H 1.08998 * 109.47092 * 66.76023 * 23 21 14 38 38 H 1.08999 * 109.46747 * 186.75575 * 23 21 14 39 39 H 1.08995 * 109.47031 * 306.75451 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.3429 -2.1619 -4.4116 10 1 2.4867 -0.1417 -5.1122 11 1 3.6294 -1.7585 -3.7120 12 7 2.0197 -0.6924 1.1995 13 6 2.0825 0.2229 2.3469 14 6 2.4712 -0.5598 3.6028 15 1 3.4141 -1.0785 3.4303 16 6 1.3952 -1.5659 3.9209 17 6 1.5035 -2.9038 3.5827 18 6 0.4648 -3.6601 3.9412 19 16 -0.7429 -2.6623 4.7409 20 6 0.2639 -1.2336 4.5446 21 7 2.6223 0.3687 4.7312 22 6 3.0337 -0.3441 5.9479 23 6 3.5690 1.4436 4.4051 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 0.7082 1.1606 -3.4845 28 1 2.9173 -1.1204 1.0288 29 1 2.8271 0.9953 2.1552 30 1 1.1074 0.6869 2.4952 31 1 2.3654 -3.3057 3.0705 32 1 0.3768 -4.7217 3.7635 33 1 0.0059 -0.2394 4.8785 34 1 4.0206 -0.7815 5.7967 35 1 3.0703 0.3548 6.7836 36 1 2.3156 -1.1345 6.1664 37 1 3.1484 2.0726 3.6206 38 1 3.7541 2.0467 5.2941 39 1 4.5068 1.0092 4.0591 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068482138.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:12 Heat of formation + Delta-G solvation = 27.273881 kcal Electronic energy + Delta-G solvation = -18847.181519 eV Core-core repulsion = 16108.987483 eV Total energy + Delta-G solvation = -2738.194035 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.33618 -37.56505 -37.07739 -34.49182 -31.74380 -30.34384 -28.59280 -28.01014 -27.26733 -24.81511 -24.37079 -21.76659 -21.43464 -19.52041 -18.61879 -18.39346 -17.01211 -16.78560 -16.04422 -15.97103 -15.67641 -15.09722 -14.82534 -14.54448 -14.22025 -13.72825 -13.56835 -13.40785 -13.21442 -13.14889 -12.92651 -12.75829 -12.68597 -12.53895 -12.36817 -12.29288 -12.18209 -12.02843 -11.69127 -11.46175 -10.88333 -10.56618 -9.50068 -9.32747 -9.10073 -8.96751 -8.12483 -6.26503 0.29274 0.94370 1.22783 1.42319 1.43522 1.53267 1.97844 2.41477 2.89505 3.16465 3.70385 4.08120 4.14845 4.27778 4.35408 4.41251 4.50131 4.60536 4.69027 4.71217 4.80551 4.84280 4.90140 5.01245 5.04457 5.05850 5.09746 5.23553 5.30101 5.47236 5.58739 5.66898 5.71580 5.85516 6.09460 6.15432 6.22620 6.48475 6.78865 7.02053 7.43974 8.93400 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.019532 B = 0.005430 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.168661 B = 5154.835860 C = 5929.020349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.222 3.778 3 H -0.034 1.034 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.962 3.038 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.266 1.266 12 N -0.674 5.674 13 C 0.079 3.921 14 C 0.158 3.842 15 H 0.045 0.955 16 C -0.078 4.078 17 C -0.123 4.123 18 C -0.219 4.219 19 S 0.081 5.919 20 C -0.197 4.197 21 N -0.547 5.547 22 C 0.029 3.971 23 C 0.022 3.978 24 H 0.024 0.976 25 H 0.015 0.985 26 H 0.055 0.945 27 H 0.262 0.738 28 H 0.330 0.670 29 H 0.021 0.979 30 H 0.054 0.946 31 H 0.138 0.862 32 H 0.179 0.821 33 H 0.163 0.837 34 H 0.026 0.974 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.087 0.913 39 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.642 -4.565 16.848 17.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.113 3.887 3 H -0.016 1.016 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.788 3.212 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.191 1.191 12 N -0.305 5.305 13 C -0.052 4.052 14 C 0.047 3.953 15 H 0.062 0.938 16 C -0.090 4.090 17 C -0.154 4.154 18 C -0.354 4.354 19 S 0.344 5.656 20 C -0.333 4.333 21 N -0.271 5.271 22 C -0.119 4.119 23 C -0.126 4.126 24 H 0.043 0.957 25 H 0.034 0.966 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.147 0.853 29 H 0.039 0.961 30 H 0.073 0.927 31 H 0.155 0.845 32 H 0.196 0.804 33 H 0.181 0.819 34 H 0.044 0.956 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 0.051 -4.765 17.629 18.261 hybrid contribution 2.960 0.353 -2.177 3.691 sum 3.011 -4.411 15.451 16.348 Atomic orbital electron populations 1.21483 0.98023 0.98483 0.98564 1.18824 0.92414 0.90574 0.86858 1.01629 1.21569 1.31574 1.12598 0.91498 0.92150 1.25733 0.95211 0.95649 1.02058 1.70032 1.37543 1.24148 1.24114 0.85494 0.78872 0.78165 0.78700 1.20254 1.20978 1.19066 1.60485 1.31898 1.33193 1.04931 1.21884 0.99634 0.93420 0.90237 1.20086 0.94862 0.90596 0.89737 0.93762 1.18559 0.96425 0.93984 1.00075 1.20092 1.00698 0.92855 1.01766 1.25703 0.97676 1.04272 1.07708 1.83944 1.22879 0.99854 1.58960 1.25390 0.97568 1.02191 1.08157 1.61912 1.48908 1.12461 1.03835 1.22390 0.98754 0.98929 0.91809 1.22453 0.93400 0.94347 1.02354 0.95689 0.96604 0.92605 0.92890 0.85297 0.96073 0.92698 0.84454 0.80355 0.81933 0.95553 0.89859 0.91615 0.92127 0.89437 0.95523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.55 9.19 71.98 0.66 -4.89 16 2 C 0.22 11.46 2.60 44.17 0.11 11.58 16 3 H -0.03 -1.94 7.86 -2.38 -0.02 -1.96 16 4 C -0.53 -29.41 8.59 25.60 0.22 -29.19 16 5 H 0.06 3.24 7.62 -2.91 -0.02 3.21 16 6 C 0.01 0.70 5.30 84.65 0.45 1.15 16 7 N -0.92 -53.50 11.32 21.45 0.24 -53.26 16 8 Si 0.96 43.58 29.54 68.60 2.03 45.61 16 9 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 11 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 12 N -0.67 -28.53 5.96 -495.42 -2.95 -31.48 16 13 C 0.08 2.86 4.56 86.30 0.39 3.25 16 14 C 0.16 4.66 2.02 44.17 0.09 4.75 16 15 H 0.04 1.31 8.09 -2.39 -0.02 1.29 16 16 C -0.08 -2.29 3.35 -20.92 -0.07 -2.36 16 17 C -0.12 -3.50 9.95 21.22 0.21 -3.29 16 18 C -0.22 -5.57 11.23 66.72 0.75 -4.82 16 19 S 0.08 2.03 23.34 -56.49 -1.32 0.71 16 20 C -0.20 -5.58 9.79 66.72 0.65 -4.93 16 21 N -0.55 -13.73 4.46 -927.75 -4.14 -17.87 16 22 C 0.03 0.59 9.28 127.69 1.18 1.78 16 23 C 0.02 0.51 8.89 127.69 1.14 1.64 16 24 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.01 0.73 7.39 -2.39 -0.02 0.71 16 26 H 0.06 3.15 6.07 -2.39 -0.01 3.13 16 27 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 28 H 0.33 13.56 8.28 -89.69 -0.74 12.82 16 29 H 0.02 0.78 6.26 -2.39 -0.01 0.77 16 30 H 0.05 2.19 7.33 -2.39 -0.02 2.17 16 31 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 32 H 0.18 3.63 8.06 -2.91 -0.02 3.61 16 33 H 0.16 4.51 8.03 -2.91 -0.02 4.48 16 34 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.08 1.40 8.12 -2.39 -0.02 1.38 16 36 H 0.07 1.43 6.53 -2.39 -0.02 1.41 16 37 H 0.06 1.54 6.55 -2.39 -0.02 1.53 16 38 H 0.09 1.58 8.05 -2.39 -0.02 1.56 16 39 H 0.03 0.59 8.11 -2.39 -0.02 0.57 16 Total: -1.00 -60.14 325.67 -0.07 -60.20 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.28 Total: 21.41 kcal Atomic # 6 Polarization: -31.11 SS G_CDS: 5.79 Total: -25.32 kcal Atomic # 7 Polarization: -95.76 SS G_CDS: -6.85 Total: -102.61 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -1.32 Total: 0.71 kcal Total: -60.14 -0.07 -60.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068482138.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.478 kcal (2) G-P(sol) polarization free energy of solvation -60.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds