Wall clock time and date at job start Mon Mar 30 2020 06:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 N 1.29031 * 124.91620 * 119.71617 * 4 2 1 6 6 C 1.31783 * 117.12504 * 179.81258 * 5 4 2 7 7 C 1.50695 * 122.75219 * 180.22834 * 6 5 4 8 8 C 1.53006 * 109.47075 * 265.29930 * 7 6 5 9 9 N 1.46905 * 109.47216 * 179.97438 * 8 7 6 10 10 C 1.46891 * 110.99848 * 179.97438 * 9 8 7 11 11 H 1.09001 * 109.47872 * 325.00086 * 10 9 8 12 12 C 1.53002 * 109.46994 * 85.00058 * 10 9 8 13 13 C 1.50705 * 109.47006 * 204.99958 * 10 9 8 14 14 H 1.08001 * 119.99762 * 359.97438 * 13 10 9 15 15 C 1.37880 * 119.99788 * 180.02562 * 13 10 9 16 16 N 1.31509 * 120.00185 * 0.02562 * 15 13 10 17 17 Si 1.86797 * 119.99628 * 179.97438 * 15 13 10 18 18 H 1.48510 * 109.47102 * 89.99887 * 17 15 13 19 19 H 1.48503 * 109.47395 * 209.99581 * 17 15 13 20 20 H 1.48500 * 109.47612 * 330.00107 * 17 15 13 21 21 C 1.33646 * 114.49875 * 0.47947 * 6 5 4 22 22 S 1.70972 * 124.91751 * 300.02763 * 4 2 1 23 23 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 26 26 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 27 27 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 28 28 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 29 29 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47283 * 25.29334 * 7 6 5 31 31 H 1.09000 * 109.47342 * 145.29870 * 7 6 5 32 32 H 1.09003 * 109.47043 * 299.99726 * 8 7 6 33 33 H 1.09000 * 109.47085 * 59.99782 * 8 7 6 34 34 H 1.00898 * 110.99874 * 56.04404 * 9 8 7 35 35 H 1.08994 * 109.47395 * 299.99914 * 12 10 9 36 36 H 1.09005 * 109.47236 * 59.99943 * 12 10 9 37 37 H 1.09005 * 109.47126 * 179.97438 * 12 10 9 38 38 H 0.96997 * 120.00196 * 180.02562 * 16 15 13 39 39 H 1.07995 * 126.03807 * 179.70752 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 2.7731 -1.7669 1.2225 6 6 3.1280 -2.2606 2.3917 7 6 3.9943 -3.4859 2.5302 8 6 3.1074 -4.7209 2.7010 9 7 3.9518 -5.9154 2.8355 10 6 3.1325 -7.1232 3.0023 11 1 2.2421 -6.8811 3.5824 12 6 2.7175 -7.6517 1.6277 13 6 3.9319 -8.1766 3.7251 14 1 4.9472 -7.9696 4.0297 15 6 3.3674 -9.4049 3.9967 16 7 2.1316 -9.6574 3.6244 17 14 4.3585 -10.7108 4.8920 18 1 4.1535 -10.5706 6.3562 19 1 3.9105 -12.0578 4.4562 20 1 5.7996 -10.5421 4.5757 21 6 2.6524 -1.5887 3.4445 22 16 1.6972 -0.2376 2.8389 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 4.6078 -3.6001 1.6365 31 1 4.6392 -3.3782 3.4024 32 1 2.4938 -4.6068 3.5947 33 1 2.4625 -4.8285 1.8289 34 1 4.6041 -5.8131 3.5984 35 1 2.1393 -6.8899 1.1049 36 1 3.6079 -7.8939 1.0475 37 1 2.1099 -8.5482 1.7515 38 1 1.7344 -10.5213 3.8157 39 1 2.8227 -1.8314 4.4829 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068614981.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:05 Heat of formation + Delta-G solvation = 21.776945 kcal Electronic energy + Delta-G solvation = -17728.961885 eV Core-core repulsion = 14990.529485 eV Total energy + Delta-G solvation = -2738.432400 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.98368 -36.40553 -35.64132 -33.09966 -31.25106 -29.02589 -27.50899 -26.98816 -25.26976 -24.89254 -22.29504 -20.80378 -19.79527 -19.58552 -17.49299 -16.45786 -15.85780 -14.99485 -14.87383 -14.58913 -14.43158 -14.06966 -13.55548 -13.27235 -13.04096 -12.83079 -12.53538 -12.44809 -11.90603 -11.84152 -11.50516 -11.43181 -11.24737 -11.06135 -10.94893 -10.73380 -10.61767 -10.18610 -10.07542 -9.92036 -9.61619 -9.40017 -8.82183 -8.62521 -8.46022 -7.25265 -6.01017 -4.07626 0.71360 1.35136 1.73741 2.83427 3.30142 3.36824 3.40944 3.87664 4.41197 4.57058 4.77627 4.79244 5.10978 5.26201 5.26864 5.30177 5.34926 5.46326 5.50873 5.55168 5.67289 5.69889 5.78972 5.89050 5.91564 6.02535 6.27899 6.50068 6.56252 6.93116 7.18587 7.27155 7.53468 7.79661 7.81514 7.92467 8.29997 8.41006 8.69500 9.03353 9.58221 11.05388 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.039830 B = 0.003245 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.813393 B = 8625.344156 C = 8857.590919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.021 4.021 3 C -0.146 4.146 4 C 0.056 3.944 5 N -0.464 5.464 6 C 0.084 3.916 7 C -0.045 4.045 8 C 0.071 3.929 9 N -0.688 5.688 10 C 0.212 3.788 11 H 0.000 1.000 12 C -0.124 4.124 13 C -0.518 4.518 14 H 0.060 0.940 15 C 0.061 3.939 16 N -0.890 5.890 17 Si 0.897 3.103 18 H -0.282 1.282 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.260 4.260 22 S 0.099 5.901 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.101 0.899 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.018 0.982 33 H 0.065 0.935 34 H 0.330 0.670 35 H 0.004 0.996 36 H 0.032 0.968 37 H 0.080 0.920 38 H 0.261 0.739 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.466 22.012 -3.825 22.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.043 4.043 3 C -0.204 4.204 4 C -0.223 4.223 5 N -0.178 5.178 6 C -0.048 4.048 7 C -0.086 4.086 8 C -0.060 4.060 9 N -0.319 5.319 10 C 0.104 3.896 11 H 0.017 0.983 12 C -0.183 4.183 13 C -0.557 4.557 14 H 0.078 0.922 15 C -0.141 4.141 16 N -0.529 5.529 17 Si 0.725 3.275 18 H -0.208 1.208 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.399 4.399 22 S 0.353 5.647 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.119 0.881 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.036 0.964 33 H 0.083 0.917 34 H 0.146 0.854 35 H 0.023 0.977 36 H 0.051 0.949 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.957 22.342 -4.537 22.989 hybrid contribution 0.630 -1.469 1.594 2.258 sum -2.327 20.872 -2.943 21.207 Atomic orbital electron populations 1.21928 0.93187 1.02910 1.02542 1.19820 0.96100 0.95320 0.93062 1.21917 1.01775 0.94162 1.02565 1.27083 0.99990 0.96534 0.98657 1.66149 1.13023 1.09862 1.28781 1.20380 0.99736 0.98629 0.86025 1.20254 0.96099 0.88737 1.03497 1.21812 0.94808 0.89544 0.99824 1.60716 1.19546 1.02000 1.49671 1.19096 0.91398 0.85707 0.93349 0.98256 1.21712 0.99361 1.00353 0.96851 1.21277 0.99622 0.98415 1.36384 0.92166 1.24931 0.94998 0.98337 0.95803 1.69901 1.13204 1.23191 1.46606 0.86516 0.80404 0.80901 0.79683 1.20787 1.21194 1.19808 1.26835 1.07402 1.00990 1.04629 1.83712 1.49411 1.29292 1.02256 0.92248 0.91831 0.91211 0.88056 0.91228 0.92260 0.92023 0.89385 0.90568 0.96406 0.91659 0.85354 0.97729 0.94926 0.90131 0.92933 0.80667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.09 37.16 0.34 -0.82 16 2 C -0.02 -0.19 3.35 -91.78 -0.31 -0.50 16 3 C -0.15 -1.05 9.09 37.16 0.34 -0.71 16 4 C 0.06 0.70 6.03 -13.46 -0.08 0.62 16 5 N -0.46 -7.14 10.53 -8.06 -0.08 -7.23 16 6 C 0.08 1.27 5.99 -84.22 -0.50 0.76 16 7 C -0.05 -0.71 5.89 -27.88 -0.16 -0.88 16 8 C 0.07 1.35 5.47 -3.82 -0.02 1.33 16 9 N -0.69 -15.19 6.30 -107.95 -0.68 -15.87 16 10 C 0.21 5.55 2.60 -68.87 -0.18 5.37 16 11 H 0.00 -0.01 7.80 -51.93 -0.40 -0.41 16 12 C -0.12 -3.24 9.19 37.16 0.34 -2.90 16 13 C -0.52 -14.49 8.59 -34.44 -0.30 -14.78 16 14 H 0.06 1.65 7.62 -52.49 -0.40 1.25 16 15 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 16 N -0.89 -25.90 11.32 55.43 0.63 -25.27 16 17 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 C -0.26 -3.38 11.14 29.12 0.32 -3.06 16 22 S 0.10 1.09 22.53 -107.50 -2.42 -1.34 16 23 H 0.06 0.44 7.93 -51.93 -0.41 0.02 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.40 7.93 -51.93 -0.41 -0.01 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.02 0.35 8.06 -51.93 -0.42 -0.07 16 33 H 0.06 1.35 7.44 -51.93 -0.39 0.97 16 34 H 0.33 6.92 8.22 -39.29 -0.32 6.59 16 35 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 36 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 2.25 6.07 -51.93 -0.32 1.94 16 38 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.18 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 333.29 15.07 5.02 5.02 Total: -1.00 -30.47 333.29 -9.26 -39.73 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -6.40 Total: 2.44 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -0.31 Total: -13.94 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: -0.14 Total: -48.37 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.42 Total: -1.34 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.47 -9.26 -39.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068614981.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.504 kcal (2) G-P(sol) polarization free energy of solvation -30.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds