Wall clock time and date at job start Mon Mar 30 2020 06:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 N 1.29031 * 124.91620 * 119.71617 * 4 2 1 6 6 C 1.31783 * 117.12504 * 179.81258 * 5 4 2 7 7 C 1.50695 * 122.75219 * 180.22834 * 6 5 4 8 8 C 1.53006 * 109.47075 * 265.29930 * 7 6 5 9 9 N 1.46905 * 109.47216 * 179.97438 * 8 7 6 10 10 C 1.46891 * 110.99848 * 179.97438 * 9 8 7 11 11 H 1.09001 * 109.47872 * 325.00086 * 10 9 8 12 12 C 1.53002 * 109.46994 * 85.00058 * 10 9 8 13 13 C 1.50705 * 109.47006 * 204.99958 * 10 9 8 14 14 H 1.08001 * 119.99762 * 359.97438 * 13 10 9 15 15 C 1.37880 * 119.99788 * 180.02562 * 13 10 9 16 16 N 1.31509 * 120.00185 * 0.02562 * 15 13 10 17 17 Si 1.86797 * 119.99628 * 179.97438 * 15 13 10 18 18 H 1.48510 * 109.47102 * 89.99887 * 17 15 13 19 19 H 1.48503 * 109.47395 * 209.99581 * 17 15 13 20 20 H 1.48500 * 109.47612 * 330.00107 * 17 15 13 21 21 C 1.33646 * 114.49875 * 0.47947 * 6 5 4 22 22 S 1.70972 * 124.91751 * 300.02763 * 4 2 1 23 23 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 26 26 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 27 27 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 28 28 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 29 29 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47283 * 25.29334 * 7 6 5 31 31 H 1.09000 * 109.47342 * 145.29870 * 7 6 5 32 32 H 1.09003 * 109.47043 * 299.99726 * 8 7 6 33 33 H 1.09000 * 109.47085 * 59.99782 * 8 7 6 34 34 H 1.00898 * 110.99874 * 56.04404 * 9 8 7 35 35 H 1.08994 * 109.47395 * 299.99914 * 12 10 9 36 36 H 1.09005 * 109.47236 * 59.99943 * 12 10 9 37 37 H 1.09005 * 109.47126 * 179.97438 * 12 10 9 38 38 H 0.96997 * 120.00196 * 180.02562 * 16 15 13 39 39 H 1.07995 * 126.03807 * 179.70752 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 2.7731 -1.7669 1.2225 6 6 3.1280 -2.2606 2.3917 7 6 3.9943 -3.4859 2.5302 8 6 3.1074 -4.7209 2.7010 9 7 3.9518 -5.9154 2.8355 10 6 3.1325 -7.1232 3.0023 11 1 2.2421 -6.8811 3.5824 12 6 2.7175 -7.6517 1.6277 13 6 3.9319 -8.1766 3.7251 14 1 4.9472 -7.9696 4.0297 15 6 3.3674 -9.4049 3.9967 16 7 2.1316 -9.6574 3.6244 17 14 4.3585 -10.7108 4.8920 18 1 4.1535 -10.5706 6.3562 19 1 3.9105 -12.0578 4.4562 20 1 5.7996 -10.5421 4.5757 21 6 2.6524 -1.5887 3.4445 22 16 1.6972 -0.2376 2.8389 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 4.6078 -3.6001 1.6365 31 1 4.6392 -3.3782 3.4024 32 1 2.4938 -4.6068 3.5947 33 1 2.4625 -4.8285 1.8289 34 1 4.6041 -5.8131 3.5984 35 1 2.1393 -6.8899 1.1049 36 1 3.6079 -7.8939 1.0475 37 1 2.1099 -8.5482 1.7515 38 1 1.7344 -10.5213 3.8157 39 1 2.8227 -1.8314 4.4829 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068614981.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:04 Heat of formation + Delta-G solvation = 2.673089 kcal Electronic energy + Delta-G solvation = -17729.790290 eV Core-core repulsion = 14990.529485 eV Total energy + Delta-G solvation = -2739.260806 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.01601 -38.02394 -36.65622 -34.92313 -32.84333 -30.52110 -28.53224 -28.09033 -27.31297 -26.00401 -23.73787 -21.77796 -21.66656 -20.68838 -18.58454 -18.43437 -17.02325 -16.66986 -16.17959 -15.97678 -15.53574 -15.23938 -15.06907 -14.51177 -14.25550 -14.00208 -13.94553 -13.58456 -13.12230 -13.00306 -12.88283 -12.74009 -12.59463 -12.41975 -12.29467 -12.23474 -12.14904 -12.00453 -11.89236 -11.71871 -10.92478 -10.60619 -10.59146 -10.37445 -9.63953 -9.12108 -8.14734 -6.29784 -0.25986 0.42263 0.75470 1.41994 1.43576 1.54569 1.76283 2.40992 2.98711 3.13818 3.56965 3.90308 4.03620 4.11025 4.13281 4.25851 4.34314 4.48937 4.53183 4.58372 4.73836 4.77600 4.87909 4.90975 4.99043 5.03295 5.05948 5.13955 5.16657 5.24748 5.28757 5.31143 5.43532 5.64949 5.81598 6.18321 6.43141 6.73657 6.82034 6.98497 7.40884 8.91451 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.039830 B = 0.003245 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.813393 B = 8625.344156 C = 8857.590919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.024 4.024 3 C -0.141 4.141 4 C 0.045 3.955 5 N -0.504 5.504 6 C 0.058 3.942 7 C -0.031 4.031 8 C 0.079 3.921 9 N -0.686 5.686 10 C 0.216 3.784 11 H -0.032 1.032 12 C -0.113 4.113 13 C -0.539 4.539 14 H 0.063 0.937 15 C 0.011 3.989 16 N -0.920 5.920 17 Si 0.967 3.033 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.266 1.266 21 C -0.269 4.269 22 S 0.158 5.842 23 H 0.066 0.934 24 H 0.046 0.954 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.015 0.985 33 H 0.044 0.956 34 H 0.337 0.663 35 H 0.014 0.986 36 H 0.029 0.971 37 H 0.059 0.941 38 H 0.263 0.737 39 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.181 23.525 -3.239 23.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.047 4.047 3 C -0.199 4.199 4 C -0.233 4.233 5 N -0.219 5.219 6 C -0.073 4.073 7 C -0.072 4.072 8 C -0.051 4.051 9 N -0.317 5.317 10 C 0.107 3.893 11 H -0.015 1.015 12 C -0.172 4.172 13 C -0.577 4.577 14 H 0.082 0.918 15 C -0.188 4.188 16 N -0.559 5.559 17 Si 0.792 3.208 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.191 1.191 21 C -0.408 4.408 22 S 0.414 5.586 23 H 0.085 0.915 24 H 0.065 0.935 25 H 0.111 0.889 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.033 0.967 33 H 0.062 0.938 34 H 0.155 0.845 35 H 0.033 0.967 36 H 0.048 0.952 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -2.668 23.885 -3.952 24.356 hybrid contribution 0.465 -1.837 1.392 2.351 sum -2.202 22.048 -2.561 22.305 Atomic orbital electron populations 1.21930 0.91968 1.02278 1.04071 1.20004 0.97015 0.96205 0.91441 1.21906 1.01265 0.92720 1.04021 1.27678 0.99018 0.95906 1.00662 1.66138 1.14819 1.11518 1.29453 1.20262 1.01091 0.99104 0.86855 1.20031 0.95618 0.87704 1.03829 1.21727 0.94856 0.89884 0.98614 1.60607 1.19437 1.01861 1.49831 1.18909 0.90581 0.87196 0.92589 1.01496 1.21553 0.98890 0.99717 0.97038 1.21598 0.99960 0.99232 1.36922 0.91840 1.25797 0.96008 1.00526 0.96482 1.70033 1.14695 1.23803 1.47396 0.85421 0.78997 0.77837 0.78548 1.19944 1.20880 1.19065 1.27140 1.07008 1.01492 1.05117 1.83445 1.47630 1.27260 1.00313 0.91499 0.93515 0.88930 0.88958 0.89059 0.91523 0.92825 0.90446 0.88641 0.96667 0.93770 0.84511 0.96664 0.95198 0.92264 0.92778 0.79065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.09 71.98 0.65 -1.36 16 2 C -0.02 -0.42 3.35 -11.54 -0.04 -0.46 16 3 C -0.14 -1.71 9.09 71.98 0.65 -1.06 16 4 C 0.05 1.09 6.03 88.52 0.53 1.62 16 5 N -0.50 -15.53 10.53 -179.41 -1.89 -17.42 16 6 C 0.06 1.75 5.99 41.52 0.25 2.00 16 7 C -0.03 -0.99 5.89 29.85 0.18 -0.81 16 8 C 0.08 3.09 5.47 86.30 0.47 3.56 16 9 N -0.69 -30.57 6.30 -495.43 -3.12 -33.69 16 10 C 0.22 11.54 2.60 44.17 0.11 11.65 16 11 H -0.03 -1.92 7.80 -2.39 -0.02 -1.93 16 12 C -0.11 -6.04 9.19 71.98 0.66 -5.38 16 13 C -0.54 -30.27 8.59 25.60 0.22 -30.05 16 14 H 0.06 3.44 7.62 -2.91 -0.02 3.42 16 15 C 0.01 0.62 5.30 84.66 0.45 1.06 16 16 N -0.92 -54.18 11.32 21.45 0.24 -53.93 16 17 Si 0.97 43.86 29.54 68.60 2.03 45.89 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 21 C -0.27 -6.64 11.14 66.78 0.74 -5.90 16 22 S 0.16 3.17 22.53 -56.49 -1.27 1.90 16 23 H 0.07 0.82 7.93 -2.39 -0.02 0.80 16 24 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 26 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 0.71 7.93 -2.39 -0.02 0.69 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.02 0.60 8.06 -2.39 -0.02 0.58 16 33 H 0.04 1.89 7.44 -2.39 -0.02 1.87 16 34 H 0.34 14.09 8.22 -89.70 -0.74 13.36 16 35 H 0.01 0.72 7.45 -2.39 -0.02 0.70 16 36 H 0.03 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.06 3.40 6.07 -2.38 -0.01 3.38 16 38 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 39 H 0.19 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -65.67 333.29 1.16 -64.51 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.29 Total: 17.87 kcal Atomic # 6 Polarization: -30.02 SS G_CDS: 4.89 Total: -25.13 kcal Atomic # 7 Polarization: -100.27 SS G_CDS: -4.77 Total: -105.04 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -1.27 Total: 1.90 kcal Total: -65.67 1.16 -64.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068614981.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.186 kcal (2) G-P(sol) polarization free energy of solvation -65.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds