Wall clock time and date at job start Mon Mar 30 2020 06:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46704 * 2 1 4 4 C 1.50690 * 109.47216 * 119.99842 * 2 1 3 5 5 N 1.29034 * 124.91647 * 120.00274 * 4 2 1 6 6 C 1.31785 * 117.12375 * 180.02562 * 5 4 2 7 7 C 1.50700 * 122.74733 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.46779 * 264.99801 * 7 6 5 9 9 N 1.46894 * 109.47093 * 180.02562 * 8 7 6 10 10 C 1.46904 * 111.00006 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47038 * 34.99283 * 10 9 8 12 12 C 1.53005 * 109.46661 * 274.99752 * 10 9 8 13 13 C 1.50701 * 109.47195 * 155.00140 * 10 9 8 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 10 9 15 15 C 1.37871 * 119.99694 * 180.27796 * 13 10 9 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 10 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 10 18 18 H 1.48504 * 109.47266 * 60.00049 * 17 15 13 19 19 H 1.48504 * 109.46970 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47383 * 299.99456 * 17 15 13 21 21 C 1.33640 * 114.50297 * 0.22934 * 6 5 4 22 22 S 1.70980 * 124.91909 * 300.00241 * 4 2 1 23 23 H 1.08993 * 109.47579 * 299.99829 * 1 2 3 24 24 H 1.09003 * 109.47117 * 60.00670 * 1 2 3 25 25 H 1.09008 * 109.46801 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47270 * 240.00492 * 2 1 3 27 27 H 1.09006 * 109.47232 * 299.99755 * 3 2 1 28 28 H 1.08999 * 109.47361 * 59.99660 * 3 2 1 29 29 H 1.08998 * 109.46667 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.47219 * 145.00022 * 7 6 5 31 31 H 1.08995 * 109.47179 * 24.99080 * 7 6 5 32 32 H 1.08997 * 109.47379 * 59.99708 * 8 7 6 33 33 H 1.09003 * 109.46894 * 299.99827 * 8 7 6 34 34 H 1.00902 * 110.99830 * 303.94975 * 9 8 7 35 35 H 1.08995 * 109.47438 * 299.99503 * 12 10 9 36 36 H 1.08996 * 109.47069 * 60.00362 * 12 10 9 37 37 H 1.09004 * 109.46658 * 179.97438 * 12 10 9 38 38 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 39 39 H 1.07992 * 126.03900 * 179.76881 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2304 5 7 2.7774 -1.7638 1.2226 6 6 3.1279 -2.2605 2.3918 7 6 3.9939 -3.4860 2.5304 8 6 3.1065 -4.7206 2.7022 9 7 3.9505 -5.9152 2.8379 10 6 3.1308 -7.1227 3.0057 11 1 2.2189 -7.0275 2.4162 12 6 2.7681 -7.2916 4.4825 13 6 3.9079 -8.3263 2.5385 14 1 4.9103 -8.2063 2.1548 15 6 3.3368 -9.5799 2.5949 16 7 2.1160 -9.7261 3.0618 17 14 4.2972 -11.0710 2.0085 18 1 5.5397 -11.2063 2.8105 19 1 3.4667 -12.2910 2.1737 20 1 4.6488 -10.9013 0.5757 21 6 2.6482 -1.5914 3.4445 22 16 1.6977 -0.2370 2.8389 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8934 -0.5137 -0.8900 27 1 1.6766 1.9564 -0.8900 28 1 1.6765 1.9564 0.8899 29 1 3.1299 1.4426 -0.0005 30 1 4.6392 -3.3783 3.4022 31 1 4.6068 -3.6008 1.6365 32 1 2.4611 -4.8284 1.8305 33 1 2.4935 -4.6058 3.5962 34 1 4.5748 -6.0081 2.0507 35 1 3.6799 -7.3867 5.0720 36 1 2.2060 -6.4210 4.8204 37 1 2.1594 -8.1873 4.6069 38 1 1.7142 -10.6080 3.1011 39 1 2.8155 -1.8363 4.4829 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068614985.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:07 Heat of formation + Delta-G solvation = 2.465371 kcal Electronic energy + Delta-G solvation = -17729.206700 eV Core-core repulsion = 14989.936887 eV Total energy + Delta-G solvation = -2739.269813 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.01570 -38.01739 -36.66038 -34.92226 -32.84233 -30.53325 -28.48980 -28.09782 -27.31971 -26.01856 -23.73270 -21.76789 -21.67035 -20.67421 -18.66648 -18.37329 -16.91365 -16.77706 -16.23561 -15.91518 -15.55497 -15.24791 -14.98445 -14.66697 -14.19450 -14.00011 -13.88954 -13.58392 -13.13244 -12.97373 -12.92019 -12.69904 -12.61621 -12.43537 -12.33854 -12.21456 -12.15271 -12.00087 -11.81722 -11.78133 -10.93218 -10.61367 -10.59166 -10.37012 -9.63713 -9.14645 -8.15152 -6.30258 -0.25572 0.42579 0.75748 1.41844 1.44287 1.51915 1.76043 2.40615 2.98801 3.13271 3.56290 3.86168 4.00282 4.12327 4.19249 4.27969 4.34143 4.50012 4.51261 4.60326 4.73189 4.80303 4.86524 4.90217 4.96549 5.04530 5.06789 5.09949 5.17519 5.26053 5.28080 5.30382 5.44778 5.64232 5.82990 6.19018 6.41483 6.71630 6.81479 6.95676 7.40325 8.90750 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.033888 B = 0.003304 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.054012 B = 8472.450616 C = 8703.365432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.024 4.024 3 C -0.141 4.141 4 C 0.044 3.956 5 N -0.506 5.506 6 C 0.057 3.943 7 C -0.031 4.031 8 C 0.079 3.921 9 N -0.682 5.682 10 C 0.215 3.785 11 H -0.037 1.037 12 C -0.112 4.112 13 C -0.542 4.542 14 H 0.062 0.938 15 C 0.012 3.988 16 N -0.919 5.919 17 Si 0.966 3.034 18 H -0.269 1.269 19 H -0.283 1.283 20 H -0.271 1.271 21 C -0.266 4.266 22 S 0.160 5.840 23 H 0.067 0.933 24 H 0.092 0.908 25 H 0.045 0.955 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.099 0.901 31 H 0.073 0.927 32 H -0.001 1.001 33 H 0.060 0.940 34 H 0.334 0.666 35 H 0.032 0.968 36 H 0.021 0.979 37 H 0.057 0.943 38 H 0.263 0.737 39 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.221 23.554 -2.960 23.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.047 4.047 3 C -0.199 4.199 4 C -0.234 4.234 5 N -0.221 5.221 6 C -0.075 4.075 7 C -0.071 4.071 8 C -0.051 4.051 9 N -0.313 5.313 10 C 0.106 3.894 11 H -0.019 1.019 12 C -0.171 4.171 13 C -0.580 4.580 14 H 0.080 0.920 15 C -0.187 4.187 16 N -0.559 5.559 17 Si 0.791 3.209 18 H -0.194 1.194 19 H -0.208 1.208 20 H -0.196 1.196 21 C -0.405 4.405 22 S 0.415 5.585 23 H 0.086 0.914 24 H 0.110 0.890 25 H 0.064 0.936 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.091 0.909 32 H 0.017 0.983 33 H 0.079 0.921 34 H 0.151 0.849 35 H 0.051 0.949 36 H 0.040 0.960 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -2.681 24.095 -2.272 24.350 hybrid contribution 0.441 -2.133 -0.974 2.386 sum -2.240 21.962 -3.246 22.313 Atomic orbital electron populations 1.21930 0.91978 1.02246 1.04093 1.19999 0.97010 0.96219 0.91433 1.21906 1.01259 0.92706 1.04031 1.27660 0.99019 0.96008 1.00717 1.66139 1.14861 1.11616 1.29507 1.20265 1.01187 0.99167 0.86869 1.20032 0.95615 0.87829 1.03646 1.21756 0.94713 0.90249 0.98418 1.60673 1.21041 1.02556 1.47042 1.18927 0.90282 0.87007 0.93168 1.01937 1.21534 0.99099 0.99259 0.97178 1.21581 1.01269 0.92675 1.42490 0.92007 1.25785 0.95889 1.01941 0.95133 1.70025 1.15168 1.24053 1.46612 0.85491 0.78520 0.77970 0.78922 1.19377 1.20827 1.19578 1.27148 1.06863 1.01253 1.05187 1.83442 1.47858 1.27013 1.00186 0.91436 0.88953 0.93573 0.89049 0.89082 0.91483 0.92829 0.88255 0.90880 0.98319 0.92135 0.84910 0.94908 0.96036 0.92435 0.92753 0.78919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.09 71.98 0.65 -1.38 16 2 C -0.02 -0.43 3.35 -11.54 -0.04 -0.46 16 3 C -0.14 -1.72 9.09 71.98 0.65 -1.07 16 4 C 0.04 1.05 6.03 88.52 0.53 1.59 16 5 N -0.51 -15.57 10.53 -179.40 -1.89 -17.46 16 6 C 0.06 1.69 5.99 41.52 0.25 1.94 16 7 C -0.03 -0.97 5.89 29.85 0.18 -0.80 16 8 C 0.08 3.07 5.47 86.31 0.47 3.54 16 9 N -0.68 -30.45 6.30 -495.43 -3.12 -33.57 16 10 C 0.21 11.49 2.60 44.17 0.11 11.61 16 11 H -0.04 -2.21 7.80 -2.39 -0.02 -2.23 16 12 C -0.11 -5.81 9.19 71.98 0.66 -5.15 16 13 C -0.54 -30.75 8.59 25.60 0.22 -30.53 16 14 H 0.06 3.40 7.62 -2.91 -0.02 3.38 16 15 C 0.01 0.66 5.31 84.65 0.45 1.11 16 16 N -0.92 -54.31 11.33 21.45 0.24 -54.07 16 17 Si 0.97 44.20 29.54 68.60 2.03 46.23 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 21 C -0.27 -6.56 11.14 66.78 0.74 -5.81 16 22 S 0.16 3.19 22.53 -56.49 -1.27 1.92 16 23 H 0.07 0.83 7.93 -2.39 -0.02 0.81 16 24 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.07 0.72 7.93 -2.39 -0.02 0.70 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 31 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.00 -0.06 8.06 -2.39 -0.02 -0.08 16 33 H 0.06 2.36 7.43 -2.39 -0.02 2.35 16 34 H 0.33 14.52 8.22 -89.69 -0.74 13.78 16 35 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.02 0.98 7.45 -2.39 -0.02 0.96 16 37 H 0.06 3.24 6.08 -2.38 -0.01 3.22 16 38 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 39 H 0.19 3.95 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -65.64 333.32 1.16 -64.48 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.29 Total: 17.88 kcal Atomic # 6 Polarization: -30.29 SS G_CDS: 4.89 Total: -25.40 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -4.77 Total: -105.10 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: 3.19 SS G_CDS: -1.27 Total: 1.92 kcal Total: -65.64 1.16 -64.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068614985.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.944 kcal (2) G-P(sol) polarization free energy of solvation -65.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds