Wall clock time and date at job start Mon Mar 30 2020 06:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50694 * 109.47079 * 2 1 4 4 N 1.31782 * 122.75089 * 89.97654 * 3 2 1 5 5 C 1.29026 * 117.12305 * 180.02562 * 4 3 2 6 6 C 1.50703 * 124.91417 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.46807 * 89.99916 * 6 5 4 8 8 N 1.46901 * 109.46916 * 179.97438 * 7 6 5 9 9 C 1.46905 * 110.99870 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.47224 * 325.00460 * 9 8 7 11 11 C 1.53002 * 109.47102 * 85.00132 * 9 8 7 12 12 C 1.50702 * 109.47206 * 205.00135 * 9 8 7 13 13 H 1.08003 * 119.99769 * 0.02562 * 12 9 8 14 14 C 1.37868 * 119.99983 * 180.02562 * 12 9 8 15 15 N 1.31517 * 120.00292 * 180.02562 * 14 12 9 16 16 Si 1.86800 * 120.00277 * 359.97438 * 14 12 9 17 17 H 1.48498 * 109.46965 * 90.00152 * 16 14 12 18 18 H 1.48503 * 109.47392 * 210.00172 * 16 14 12 19 19 H 1.48504 * 109.47211 * 330.00313 * 16 14 12 20 20 S 1.70979 * 110.17009 * 0.22979 * 5 4 3 21 21 C 1.33643 * 122.74975 * 270.00088 * 3 2 1 22 22 C 1.50706 * 126.03511 * 359.97438 * 21 3 2 23 23 H 1.09000 * 109.47112 * 299.99660 * 1 2 3 24 24 H 1.08999 * 109.47280 * 59.99595 * 1 2 3 25 25 H 1.09001 * 109.47381 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46702 * 240.00175 * 2 1 3 27 27 H 1.08999 * 109.47280 * 120.00405 * 2 1 3 28 28 H 1.08995 * 109.47327 * 330.00604 * 6 5 4 29 29 H 1.08996 * 109.47062 * 209.99461 * 6 5 4 30 30 H 1.09004 * 109.46889 * 60.00274 * 7 6 5 31 31 H 1.08995 * 109.47384 * 299.99914 * 7 6 5 32 32 H 1.00901 * 111.00067 * 303.95263 * 8 7 6 33 33 H 1.08999 * 109.47105 * 180.02562 * 11 9 8 34 34 H 1.08996 * 109.46950 * 299.99914 * 11 9 8 35 35 H 1.09003 * 109.46813 * 60.00077 * 11 9 8 36 36 H 0.96997 * 120.00409 * 180.02562 * 15 14 12 37 37 H 1.08999 * 109.46887 * 90.00450 * 22 21 3 38 38 H 1.09003 * 109.46367 * 210.00153 * 22 21 3 39 39 H 1.08997 * 109.46876 * 329.99518 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2695 2.0931 1.1083 5 6 2.6971 3.3038 0.9818 6 6 3.0226 4.2278 2.1270 7 6 4.4930 4.0601 2.5154 8 7 4.8104 4.9612 3.6314 9 6 6.2175 4.8277 4.0319 10 1 6.5311 3.7901 3.9173 11 6 7.0867 5.7237 3.1472 12 6 6.3714 5.2429 5.4724 13 1 5.5099 5.5725 6.0343 14 6 7.6117 5.2019 6.0728 15 7 7.7460 5.5638 7.3301 16 14 9.1015 4.6312 5.1011 17 1 9.7364 5.7982 4.4376 18 1 10.0776 3.9931 6.0207 19 1 8.6750 3.6486 4.0726 20 16 2.8342 3.7107 -0.6732 21 6 2.2733 2.1024 -1.1240 22 6 2.0920 1.5880 -2.5289 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.3911 3.9839 2.9813 29 1 2.8421 5.2592 1.8243 30 1 5.1245 4.3039 1.6611 31 1 4.6735 3.0287 2.8181 32 1 4.5905 5.9178 3.3976 33 1 8.1308 5.6244 3.4441 34 1 6.9754 5.4234 2.1054 35 1 6.7731 6.7614 3.2618 36 1 8.6187 5.5353 7.7525 37 1 1.0793 1.8063 -2.8678 38 1 2.8092 2.0753 -3.1895 39 1 2.2566 0.5107 -2.5454 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068615431.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:39 Heat of formation + Delta-G solvation = 29.566603 kcal Electronic energy + Delta-G solvation = -17803.180911 eV Core-core repulsion = 15065.086295 eV Total energy + Delta-G solvation = -2738.094616 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.10757 -36.73401 -34.68197 -32.86297 -31.82051 -31.18442 -28.51867 -26.11408 -25.07362 -24.27958 -23.15368 -21.26602 -20.23101 -18.85992 -17.96396 -16.68613 -15.50367 -15.30768 -14.89621 -14.76250 -14.23449 -14.02424 -13.87242 -13.36384 -13.16138 -12.99831 -12.81360 -12.65845 -12.31943 -12.18720 -12.08272 -11.69106 -11.64292 -11.24888 -11.05659 -10.97090 -10.75930 -10.45353 -10.11382 -9.61690 -9.47836 -9.26911 -9.15165 -8.62592 -8.54725 -7.46484 -6.02795 -4.00165 0.64236 1.27694 1.69199 2.73303 3.26428 3.37075 3.39531 3.98874 4.41936 4.65549 4.77753 4.81840 4.99576 5.09699 5.15654 5.23324 5.25978 5.27722 5.35943 5.50391 5.56048 5.60272 5.66791 5.75993 5.93917 5.96828 6.17172 6.19941 6.22900 6.23912 6.37313 6.50581 6.75057 7.10989 7.71239 7.76875 7.88693 8.30220 8.70312 9.08624 9.59754 11.10782 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.031305 B = 0.003659 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.211385 B = 7650.242052 C = 7840.333833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.049 4.049 3 C 0.068 3.932 4 N -0.466 5.466 5 C 0.070 3.930 6 C -0.044 4.044 7 C 0.067 3.933 8 N -0.670 5.670 9 C 0.183 3.817 10 H 0.034 0.966 11 C -0.183 4.183 12 C -0.498 4.498 13 H 0.083 0.917 14 C 0.067 3.933 15 N -0.901 5.901 16 Si 0.885 3.115 17 H -0.280 1.280 18 H -0.296 1.296 19 H -0.270 1.270 20 S 0.104 5.896 21 C -0.236 4.236 22 C -0.071 4.071 23 H 0.058 0.942 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.020 0.980 31 H 0.073 0.927 32 H 0.331 0.669 33 H 0.045 0.955 34 H 0.026 0.974 35 H 0.055 0.945 36 H 0.263 0.737 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.448 -7.429 -20.911 25.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.089 4.089 3 C -0.064 4.064 4 N -0.180 5.180 5 C -0.209 4.209 6 C -0.085 4.085 7 C -0.065 4.065 8 N -0.299 5.299 9 C 0.074 3.926 10 H 0.052 0.948 11 C -0.242 4.242 12 C -0.537 4.537 13 H 0.101 0.899 14 C -0.134 4.134 15 N -0.540 5.540 16 Si 0.716 3.284 17 H -0.208 1.208 18 H -0.224 1.224 19 H -0.195 1.195 20 S 0.360 5.640 21 C -0.357 4.357 22 C -0.130 4.130 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.123 0.877 29 H 0.101 0.899 30 H 0.038 0.962 31 H 0.091 0.909 32 H 0.148 0.852 33 H 0.064 0.936 34 H 0.045 0.955 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.312 -7.139 -20.273 24.770 hybrid contribution 1.223 -0.548 -1.182 1.787 sum -11.089 -7.687 -21.454 25.345 Atomic orbital electron populations 1.21695 0.94360 1.01821 1.02258 1.20117 0.96150 0.89367 1.03274 1.20154 1.01563 0.98409 0.86299 1.66142 1.14866 1.05722 1.31257 1.27018 1.01084 0.95025 0.97763 1.20336 0.99167 0.95509 0.93507 1.21890 0.91980 0.99397 0.93189 1.60596 1.24217 1.09583 1.35553 1.19647 0.82520 0.95131 0.95279 0.94828 1.22860 1.01425 1.01882 0.98004 1.20983 0.95585 1.43505 0.93581 0.89935 1.24935 0.98554 0.95086 0.94837 1.69882 1.24039 1.48587 1.11476 0.86902 0.83165 0.78919 0.79388 1.20771 1.22383 1.19534 1.83950 1.62476 1.13640 1.03887 1.25618 1.11924 0.97332 1.00825 1.20199 1.02284 1.01305 0.89206 0.92245 0.92800 0.92060 0.90440 0.90060 0.87698 0.89931 0.96183 0.90892 0.85183 0.93602 0.95535 0.92614 0.92691 0.90833 0.91328 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.89 37.16 0.37 -0.83 16 2 C -0.05 -0.48 6.11 -27.88 -0.17 -0.65 16 3 C 0.07 0.85 5.99 -84.23 -0.50 0.35 16 4 N -0.47 -7.01 10.53 -8.06 -0.08 -7.10 16 5 C 0.07 0.99 6.64 -13.46 -0.09 0.90 16 6 C -0.04 -0.62 6.06 -27.88 -0.17 -0.79 16 7 C 0.07 1.14 5.47 -3.82 -0.02 1.12 16 8 N -0.67 -13.51 6.23 -107.94 -0.67 -14.19 16 9 C 0.18 4.35 2.17 -68.86 -0.15 4.20 16 10 H 0.03 0.84 6.86 -51.93 -0.36 0.49 16 11 C -0.18 -3.94 8.64 37.16 0.32 -3.62 16 12 C -0.50 -14.18 9.42 -34.44 -0.32 -14.51 16 13 H 0.08 2.57 8.06 -52.48 -0.42 2.15 16 14 C 0.07 1.95 5.45 -17.82 -0.10 1.86 16 15 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 16 Si 0.89 22.19 24.37 -169.99 -4.14 18.04 16 17 H -0.28 -6.82 6.87 56.52 0.39 -6.43 16 18 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 19 H -0.27 -6.53 6.53 56.52 0.37 -6.17 16 20 S 0.10 1.22 23.18 -107.50 -2.49 -1.27 16 21 C -0.24 -2.62 6.59 -35.92 -0.24 -2.86 16 22 C -0.07 -0.53 10.10 36.01 0.36 -0.16 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.59 6.72 -51.93 -0.35 0.24 16 27 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.02 0.33 7.43 -51.93 -0.39 -0.05 16 31 H 0.07 1.36 8.06 -51.93 -0.42 0.95 16 32 H 0.33 6.09 8.47 -39.29 -0.33 5.76 16 33 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 34 H 0.03 0.49 7.45 -51.93 -0.39 0.10 16 35 H 0.05 1.15 8.13 -51.93 -0.42 0.73 16 36 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.49 6.76 -51.93 -0.35 0.14 16 LS Contribution 325.96 15.07 4.91 4.91 Total: -1.00 -31.73 325.96 -8.57 -40.31 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.16 Total: 1.39 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -0.71 Total: -15.00 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.02 Total: -48.38 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.14 Total: 18.04 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.49 Total: -1.27 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.73 -8.57 -40.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068615431.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.874 kcal (2) G-P(sol) polarization free energy of solvation -31.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds